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CAN33_29910-T1, CAN33_29910-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_29910-T1
Unique NameCAN33_29910-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000003.1:122825..124130+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_29910-T1 ID=CAN33_29910-T1|Name=CAN33_29910-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1306bp|location=Sequence derived from alignment at NKJJ01000003.1:122825..124130+ (Aspergillus niger FDAARGOS_311)
ATGGTTCAAGCCGAATCCTCAGCCAGTGCCTCTCGTAATGGCCTCAAGGC
GCATACGGCCGGCGCCCCTCCTGACTATGAACTGCCCTGGTACGTACAGC
AGGTCCCAGCACTAAAGCCAGCTTAGGATGTCGAGTCTGATTGCCAAATT
TAAACAATAGGGTAGAGAAATATCGCCCGGTATATCTCGATGATATTGTT
GGAAACACAGAAACAGTTGAGCGCTTGAAGATCATCGCTAAGGATGGAAA
CATGCCGCACGTTATCATCTCGGGCATGCCCGGTATTGGAAAGACTACTT
CGATCTTGTGCTTGGCGAGACAGCTACTGGGAGACGCATATAAGGAGGCG
GTTCTGGAGCTCAATGCTAGTGATGAAAGAGGTACATCTACCCCACTTGG
AGAGGGAGACGAGAGACGGCTTTAATCTAATATGCTCCAGGTATCGACGT
GGTACGGAACCGGATCAAAGGCTTTGCGCAGAAGAAGGTCACTTTGCCGC
CTGGTCGTCATAAGCTTGTCATCCTTGATGAGGCAGATAGGTACGTACTA
GACAGTGAGCTACATTACCTTTCCTGGATGCTCACGGTGGTATAGTATGA
CATCAGGTGCCCAGCAAGCTTTGCGGCGTACAATGGAGATTTACTCGTCG
ACTACACGGTTCGCGTTCGCCTGTAATCAGTCAAATAAAATCATCGAGCC
GATTCAGTCGCGATGCGCTATCCTACGTTATGCTCGGTTGACCGATGCGC
AAATTGTCAAGCGTCTGAAACAAGTATGCGATGCTGAGAAAGTGGAACAT
AACGAAGAGGGCATTGCCGCCCTGGTATTCAGTGCTGAGGGAGATATGCG
TCAGGCTATCAACAACTTGCAGAGTACATGGTCGGGTTTCGGTTTCGTCA
GTGGGGACAACGTCTTCAGGGTGGTCGACAGCCCGCACCCGATCAAGGTC
CAGGCAATGATCAAGGCCTGCTGGGAAGGCAAGGTTGATGCGGCGTTGGA
GACACTGAATGAATTGTGGTATGTACACAGTGCAGTCTGCCAATTTTATG
TTTGTGGACTCGTCCTGACCGTATTTCTAGGGAATTGGGGTATTCCTCCC
ATGATATCATCAGTACCATGTTCCGTGTCACCAAGACAATTCCCACTCTG
TCAGAACATTCGAAGTTGGAATTCATCCGGGAGATTGGTTTTACGCACAT
GCGCATTCTAGACGGCGTGCAGTCACTGCTGCAGCTTAGCGGCTGCGTTG
CGAAGCTTTGCAGGATCAACATGAAGCCGCAGCTCTTTGAGCCGCCGAAG
AATTGA
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Coding sequence (CDS) from alignment at NKJJ01000003.1:122825..124130+

>CAN33_29910-T1 ID=CAN33_29910-T1|Name=CAN33_29910-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=5295bp|location=Sequence derived from alignment at NKJJ01000003.1:122825..124130+ (Aspergillus niger FDAARGOS_311)
ATGGTTCAAGCCGAATCCTCAGCCAGTGCCTCTCGTAATGGCCTCAAGGC
GCATACGGCCGGCGCCCCTCCTGACTATGAACTGCCCTGGGTAGAGAAAT
ATCGCCCGGTATATCTCGATGATATTGTTGGAAACACAGAAACAGTTGAG
CGCTTGAAGATCATCGCTAAGGATGGAAACATGCCGCACGTTATCATCTC
GGGCATGCCCGGTATTGGAAAGACTACTTCGATCTTGTGCTTGGCGAGAC
AGCTACTGGGAGACGCATATAAGGAGGCGGTTCTGGAGCTCAATGCTAGT
GATGAAAGAGGTATCGACGTGGTACGGAACCGGATCAAAGGCTTTGCGCA
GAAGAAGGTCACTTTGCCGCCTGGTCGTCATAAGCTTGTCATCCTTGATG
AGGCAGATAGTATGACATCAGGTGCCCAGCAAGCTTTGCGGCGTACAATG
GAGATTTACTCGTCGACTACACGGTTCGCGTTCGCCTGTAATCAGTCAAA
TAAAATCATCGAGCCGATTCAGTCGCGATGCGCTATCCTACGTTATGCTC
GGTTGACCGATGCGCAAATTGTCAAGCGTCTGAAACAAGTATGCGATGCT
GAGAAAGTGGAACATAACGAAGAGGGCATTGCCGCCCTGGTATTCAGTGC
TGAGGGAGATATGCGTCAGGCTATCAACAACTTGCAGAGTACATGGTCGG
GTTTCGGTTTCGTCAGTGGGGACAACGTCTTCAGGGTGGTCGACAGCCCG
CACCCGATCAAGGTCCAGGCAATGATCAAGGCCTGCTGGGAAGGCAAGGT
TGATGCGGCGTTGGAGACACTGAATGAATTGTGGGAATTGGGGTATTCCT
CCCATGATATCATCAGTACCATGTTCCGTGTCACCAAGACAATTCCCACT
CTGTCAGAACATTCGAAGTTGGAATTCATCCGGGAGATTGGTTTTACGCA
CATGCGCATTCTAGACGGCGTGCAGTCACTGCTGCAGCTTAGCGGCTGCG
TTGCGAAGCTTTGCAGGATCAACATGAAGCCGCAGCTCTTTGAGCCGCCG
AAGAATTGAATGGTTCAAGCCGAATCCTCAGCCAGTGCCTCTCGTAATGG
CCTCAAGGCGCATACGGCCGGCGCCCCTCCTGACTATGAACTGCCCTGGG
TAGAGAAATATCGCCCGGTATATCTCGATGATATTGTTGGAAACACAGAA
ACAGTTGAGCGCTTGAAGATCATCGCTAAGGATGGAAACATGCCGCACGT
TATCATCTCGGGCATGCCCGGTATTGGAAAGACTACTTCGATCTTGTGCT
TGGCGAGACAGCTACTGGGAGACGCATATAAGGAGGCGGTTCTGGAGCTC
AATGCTAGTGATGAAAGAGGTATCGACGTGGTACGGAACCGGATCAAAGG
CTTTGCGCAGAAGAAGGTCACTTTGCCGCCTGGTCGTCATAAGCTTGTCA
TCCTTGATGAGGCAGATAGTATGACATCAGGTGCCCAGCAAGCTTTGCGG
CGTACAATGGAGATTTACTCGTCGACTACACGGTTCGCGTTCGCCTGTAA
TCAGTCAAATAAAATCATCGAGCCGATTCAGTCGCGATGCGCTATCCTAC
GTTATGCTCGGTTGACCGATGCGCAAATTGTCAAGCGTCTGAAACAAGTA
TGCGATGCTGAGAAAGTGGAACATAACGAAGAGGGCATTGCCGCCCTGGT
ATTCAGTGCTGAGGGAGATATGCGTCAGGCTATCAACAACTTGCAGAGTA
CATGGTCGGGTTTCGGTTTCGTCAGTGGGGACAACGTCTTCAGGGTGGTC
GACAGCCCGCACCCGATCAAGGTCCAGGCAATGATCAAGGCCTGCTGGGA
AGGCAAGGTTGATGCGGCGTTGGAGACACTGAATGAATTGTGGGAATTGG
GGTATTCCTCCCATGATATCATCAGTACCATGTTCCGTGTCACCAAGACA
ATTCCCACTCTGTCAGAACATTCGAAGTTGGAATTCATCCGGGAGATTGG
TTTTACGCACATGCGCATTCTAGACGGCGTGCAGTCACTGCTGCAGCTTA
GCGGCTGCGTTGCGAAGCTTTGCAGGATCAACATGAAGCCGCAGCTCTTT
GAGCCGCCGAAGAATTGAATGGTTCAAGCCGAATCCTCAGCCAGTGCCTC
TCGTAATGGCCTCAAGGCGCATACGGCCGGCGCCCCTCCTGACTATGAAC
TGCCCTGGGTAGAGAAATATCGCCCGGTATATCTCGATGATATTGTTGGA
AACACAGAAACAGTTGAGCGCTTGAAGATCATCGCTAAGGATGGAAACAT
GCCGCACGTTATCATCTCGGGCATGCCCGGTATTGGAAAGACTACTTCGA
TCTTGTGCTTGGCGAGACAGCTACTGGGAGACGCATATAAGGAGGCGGTT
CTGGAGCTCAATGCTAGTGATGAAAGAGGTATCGACGTGGTACGGAACCG
GATCAAAGGCTTTGCGCAGAAGAAGGTCACTTTGCCGCCTGGTCGTCATA
AGCTTGTCATCCTTGATGAGGCAGATAGTATGACATCAGGTGCCCAGCAA
GCTTTGCGGCGTACAATGGAGATTTACTCGTCGACTACACGGTTCGCGTT
CGCCTGTAATCAGTCAAATAAAATCATCGAGCCGATTCAGTCGCGATGCG
CTATCCTACGTTATGCTCGGTTGACCGATGCGCAAATTGTCAAGCGTCTG
AAACAAGTATGCGATGCTGAGAAAGTGGAACATAACGAAGAGGGCATTGC
CGCCCTGGTATTCAGTGCTGAGGGAGATATGCGTCAGGCTATCAACAACT
TGCAGAGTACATGGTCGGGTTTCGGTTTCGTCAGTGGGGACAACGTCTTC
AGGGTGGTCGACAGCCCGCACCCGATCAAGGTCCAGGCAATGATCAAGGC
CTGCTGGGAAGGCAAGGTTGATGCGGCGTTGGAGACACTGAATGAATTGT
GGGAATTGGGGTATTCCTCCCATGATATCATCAGTACCATGTTCCGTGTC
ACCAAGACAATTCCCACTCTGTCAGAACATTCGAAGTTGGAATTCATCCG
GGAGATTGGTTTTACGCACATGCGCATTCTAGACGGCGTGCAGTCACTGC
TGCAGCTTAGCGGCTGCGTTGCGAAGCTTTGCAGGATCAACATGAAGCCG
CAGCTCTTTGAGCCGCCGAAGAATTGAATGGTTCAAGCCGAATCCTCAGC
CAGTGCCTCTCGTAATGGCCTCAAGGCGCATACGGCCGGCGCCCCTCCTG
ACTATGAACTGCCCTGGGTAGAGAAATATCGCCCGGTATATCTCGATGAT
ATTGTTGGAAACACAGAAACAGTTGAGCGCTTGAAGATCATCGCTAAGGA
TGGAAACATGCCGCACGTTATCATCTCGGGCATGCCCGGTATTGGAAAGA
CTACTTCGATCTTGTGCTTGGCGAGACAGCTACTGGGAGACGCATATAAG
GAGGCGGTTCTGGAGCTCAATGCTAGTGATGAAAGAGGTATCGACGTGGT
ACGGAACCGGATCAAAGGCTTTGCGCAGAAGAAGGTCACTTTGCCGCCTG
GTCGTCATAAGCTTGTCATCCTTGATGAGGCAGATAGTATGACATCAGGT
GCCCAGCAAGCTTTGCGGCGTACAATGGAGATTTACTCGTCGACTACACG
GTTCGCGTTCGCCTGTAATCAGTCAAATAAAATCATCGAGCCGATTCAGT
CGCGATGCGCTATCCTACGTTATGCTCGGTTGACCGATGCGCAAATTGTC
AAGCGTCTGAAACAAGTATGCGATGCTGAGAAAGTGGAACATAACGAAGA
GGGCATTGCCGCCCTGGTATTCAGTGCTGAGGGAGATATGCGTCAGGCTA
TCAACAACTTGCAGAGTACATGGTCGGGTTTCGGTTTCGTCAGTGGGGAC
AACGTCTTCAGGGTGGTCGACAGCCCGCACCCGATCAAGGTCCAGGCAAT
GATCAAGGCCTGCTGGGAAGGCAAGGTTGATGCGGCGTTGGAGACACTGA
ATGAATTGTGGGAATTGGGGTATTCCTCCCATGATATCATCAGTACCATG
TTCCGTGTCACCAAGACAATTCCCACTCTGTCAGAACATTCGAAGTTGGA
ATTCATCCGGGAGATTGGTTTTACGCACATGCGCATTCTAGACGGCGTGC
AGTCACTGCTGCAGCTTAGCGGCTGCGTTGCGAAGCTTTGCAGGATCAAC
ATGAAGCCGCAGCTCTTTGAGCCGCCGAAGAATTGAATGGTTCAAGCCGA
ATCCTCAGCCAGTGCCTCTCGTAATGGCCTCAAGGCGCATACGGCCGGCG
CCCCTCCTGACTATGAACTGCCCTGGGTAGAGAAATATCGCCCGGTATAT
CTCGATGATATTGTTGGAAACACAGAAACAGTTGAGCGCTTGAAGATCAT
CGCTAAGGATGGAAACATGCCGCACGTTATCATCTCGGGCATGCCCGGTA
TTGGAAAGACTACTTCGATCTTGTGCTTGGCGAGACAGCTACTGGGAGAC
GCATATAAGGAGGCGGTTCTGGAGCTCAATGCTAGTGATGAAAGAGGTAT
CGACGTGGTACGGAACCGGATCAAAGGCTTTGCGCAGAAGAAGGTCACTT
TGCCGCCTGGTCGTCATAAGCTTGTCATCCTTGATGAGGCAGATAGTATG
ACATCAGGTGCCCAGCAAGCTTTGCGGCGTACAATGGAGATTTACTCGTC
GACTACACGGTTCGCGTTCGCCTGTAATCAGTCAAATAAAATCATCGAGC
CGATTCAGTCGCGATGCGCTATCCTACGTTATGCTCGGTTGACCGATGCG
CAAATTGTCAAGCGTCTGAAACAAGTATGCGATGCTGAGAAAGTGGAACA
TAACGAAGAGGGCATTGCCGCCCTGGTATTCAGTGCTGAGGGAGATATGC
GTCAGGCTATCAACAACTTGCAGAGTACATGGTCGGGTTTCGGTTTCGTC
AGTGGGGACAACGTCTTCAGGGTGGTCGACAGCCCGCACCCGATCAAGGT
CCAGGCAATGATCAAGGCCTGCTGGGAAGGCAAGGTTGATGCGGCGTTGG
AGACACTGAATGAATTGTGGGAATTGGGGTATTCCTCCCATGATATCATC
AGTACCATGTTCCGTGTCACCAAGACAATTCCCACTCTGTCAGAACATTC
GAAGTTGGAATTCATCCGGGAGATTGGTTTTACGCACATGCGCATTCTAG
ACGGCGTGCAGTCACTGCTGCAGCTTAGCGGCTGCGTTGCGAAGCTTTGC
AGGATCAACATGAAGCCGCAGCTCTTTGAGCCGCCGAAGAATTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006260DNA replication
Vocabulary: Molecular Function
TermDefinition
GO:0003677DNA binding
GO:0005524ATP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RFC4CAN33_29910Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_29910-T1CAN33_29910-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_29910-T1.exon1CAN33_29910-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_29910-T1.exon2CAN33_29910-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_29910-T1.exon3CAN33_29910-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_29910-T1.exon4CAN33_29910-T1.exon4Aspergillus niger FDAARGOS_311exon
CAN33_29910-T1.exon5CAN33_29910-T1.exon5Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_29910-T1.cdsCAN33_29910-T1.cdsAspergillus niger FDAARGOS_311CDS


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR008921
DBxrefInterPro:IPR003959
DBxrefInterPro:IPR013748
DBxrefInterPro:IPR003593
DBxrefPFAM:PF08542
DBxrefPFAM:PF13173
DBxrefPFAM:PF00004
Productreplication factor C subunit 4
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000003.1supercontigNKJJ01000003.1:122825..124130 +
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