|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000003.1:256284..257421- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_30125-T1 ID=CAN33_30125-T1|Name=CAN33_30125-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1138bp|location=Sequence derived from alignment at NKJJ01000003.1:256284..257421- (Aspergillus niger FDAARGOS_311)
ATGGCTATCTCAGACCTACTGAATCGCCGTGTGCGAGCTGTCGCTCAGGA
CGACGAGGAGCTTTACTCTGACCAGTCTGGCTCGGATCAGGCGAGCGACG
ATCTCCGCTCTGACGAGTCAGGCTCAGAAAGTGGCAGTGATGGTTCCCTA
GACGAAGACGACGACGACGATGTGGTTAGTTTCCCCTCGTTTGGATAGAC
ATTGCAACATGCTGACTATCTCACAGTCTCAAGGCGACCCGGAAGATATG
GATGATGACGACGATGACGACGATGACGACGACGAAGATGACGAAGACGA
CAATGATGATGCCCAGGACGACGTTCAAGCCTCACTAAGCAGTATCTCGT
TCGGCGCATTGGCGAAAGCGCAAGCATCTATAGGACCCAAATCAAAGCGG
TCGTCCAAGGCCTCCCGGACAGAAGACGAGCCTGCCGCTCCTTCCCCCTT
AGACGACATTCGGGCGCGGATTCAAGAGGCACGCGAACAGAAACGCCAAG
CGCTGGCGAAAAATAAGGATTCGGAAAAGCTCTCTCGTTCCTCCAAGCAT
GCGCCGGCCGTACAATCCTCCAAACATGCCGTCTCCCGCAAACGGACCAT
CATTGAGCCGCCAAGTGTACCCAAGTCGCGAGACCCCCGTTTTGACCCGA
CTGTCCTGAGCCAGGGTGGTCGCGGAAACCCTCAAGGAACGAGCAACGCT
TACGCATTCTTGGACGAGTATCGCCGGGACGAACTGAAGCAGTTGAAGGA
ACAATACGCCAAGACGAAGAACCAAGAACAGAAAGAAGCTCTGAAGCGTA
CGATTCGGTCGACTCAAGACCGTCTTCGAGCGATGGAGAATAGGAAACGC
GAGAAGGAGATCTTAGCGGAGCATAAGAAGAAGGAGAAACAGCTCATCCG
CGAAGGAAAGAAGAGCAACCCGTACTTCTTGAAGAAGTCGGACCTGAAGA
AGCAGGTGCTGCTCAAGAAGTACGAGAATATGAACTCCAAGGACCGCACC
AAGGCACTCGAGAGGAAGCGCAAGAAGACTGCCGCCAAGGAAAGAAAGGA
GATGCCCATGGAGCGGAGAGCCTTGGCTGGCGACGATGCGCCGAGTGGCG
GTGGAGGTGGCGGCTGGAAACGCCGCAGAGTTGCATAG back to topCoding sequence (CDS) from alignment at NKJJ01000003.1:256284..257421- >CAN33_30125-T1 ID=CAN33_30125-T1|Name=CAN33_30125-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1824bp|location=Sequence derived from alignment at NKJJ01000003.1:256284..257421- (Aspergillus niger FDAARGOS_311)
TATCTCGTTCGGCGCATTGGCGAAAGCGCAAGCATCTATAGGACCCAAAT
CAAAGCGGTCGTCCAAGGCCTCCCGGACAGAAGACGAGCCTGCCGCTCCT
TCCCCCTTAGACGACATTCGGGCGCGGATTCAAGAGGCACGCGAACAGAA
ACGCCAAGCGCTGGCGAAAAATAAGGATTCGGAAAAGCTCTCTCGTTCCT
CCAAGCATGCGCCGGCCGTACAATCCTCCAAACATGCCGTCTCCCGCAAA
CGGACCATCATTGAGCCGCCAAGTGTACCCAAGTCGCGAGACCCCCGTTT
TGACCCGACTGTCCTGAGCCAGGGTGGTCGCGGAAACCCTCAAGGAACGA
GCAACGCTTACGCATTCTTGGACGAGTATCGCCGGGACGAACTGAAGCAG
TTGAAGGAACAATACGCCAAGACGAAGAACCAAGAACAGAAAGAAGCTCT
GAAGCGTACGATTCGGTCGACTCAAGACCGTCTTCGAGCGATGGAGAATA
GGAAACGCGAGAAGGAGATCTTAGCGGAGCATAAGAAGAAGGAGAAACAG
CTCATCCGCGAAGGAAAGAAGAGCAACCCGTACTTCTTGAAGAAGTCGGA
CCTGAAGAAGCAGGTGCTGCTCAAGAAGTACGAGAATATGAACTCCAAGG
ACCGCACCAAGGCACTCGAGAGGAAGCGCAAGAAGACTGCCGCCAAGGAA
AGAAAGGAGATGCCCATGGAGCGGAGAGCCTTGGCTGGCGACGATGCGCC
GAGTGGCGGTGGAGGTGGCGGCTGGAAACGCCGCAGAGTTGCATAGATGG
CTATCTCAGACCTACTGAATCGCCGTGTGCGAGCTGTCGCTCAGGACGAC
GAGGAGCTTTACTCTGACCAGTCTGGCTCGGATCAGGCGAGCGACGATCT
CCGCTCTGACGATATCTCGTTCGGCGCATTGGCGAAAGCGCAAGCATCTA
TAGGACCCAAATCAAAGCGGTCGTCCAAGGCCTCCCGGACAGAAGACGAG
CCTGCCGCTCCTTCCCCCTTAGACGACATTCGGGCGCGGATTCAAGAGGC
ACGCGAACAGAAACGCCAAGCGCTGGCGAAAAATAAGGATTCGGAAAAGC
TCTCTCGTTCCTCCAAGCATGCGCCGGCCGTACAATCCTCCAAACATGCC
GTCTCCCGCAAACGGACCATCATTGAGCCGCCAAGTGTACCCAAGTCGCG
AGACCCCCGTTTTGACCCGACTGTCCTGAGCCAGGGTGGTCGCGGAAACC
CTCAAGGAACGAGCAACGCTTACGCATTCTTGGACGAGTATCGCCGGGAC
GAACTGAAGCAGTTGAAGGAACAATACGCCAAGACGAAGAACCAAGAACA
GAAAGAAGCTCTGAAGCGTACGATTCGGTCGACTCAAGACCGTCTTCGAG
CGATGGAGAATAGGAAACGCGAGAAGGAGATCTTAGCGGAGCATAAGAAG
AAGGAGAAACAGCTCATCCGCGAAGGAAAGAAGAGCAACCCGTACTTCTT
GAAGAAGTCGGACCTGAAGAAGCAGGTGCTGCTCAAGAAGTACGAGAATA
TGAACTCCAAGGACCGCACCAAGGCACTCGAGAGGAAGCGCAAGAAGACT
GCCGCCAAGGAAAGAAAGGAGATGCCCATGGAGCGGAGAGCCTTGGCTGG
CGACGATGCGCCGAGTGGCGGTGGAGGTGGCGGCTGGAAACGCCGCAGAG
TTGCATAGATGGCTATCTCAGACCTACTGAATCGCCGTGTGCGAGCTGTC
GCTCAGGACGACGAGGAGCTTTACTCTGACCAGTCTGGCTCGGATCAGGC
GAGCGACGATCTCCGCTCTGACGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000469 | cleavage involved in rRNA processing |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09265M98 |
| DBxref | InterPro:IPR009292 |
| DBxref | PFAM:PF06102 |
| Product | rRNA bioproteinsis protein rrp36 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000003.1 | supercontig | NKJJ01000003.1:256284..257421 - |
|
