You are here

Home

CAN33_30445-T1, CAN33_30445-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_30445-T1
Unique NameCAN33_30445-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000003.1:455681..456818+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_30445-T1 ID=CAN33_30445-T1|Name=CAN33_30445-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1138bp|location=Sequence derived from alignment at NKJJ01000003.1:455681..456818+ (Aspergillus niger FDAARGOS_311)
ATGTCGTCCGACGAGATTGTTTGGCAGGTTATCAACCAGCAATTCTGCGC
CTATAAGCTCAAGTAAGTTTCTATCTCGATCTCTATCCGCGCATAAAAAA
AATTTCCGCCTACCACATACATACAGCACAACAAGAACCGACAAAGAAGA
GAGAGAATATAATCCACAAGTATATAAATAAAAAGCTAACCATAATTTGT
TTTTGAAAAGAACCACTAAGAACCAAAACTTCTGCCGAAATGAATACAAC
GTTAGCGGACTCTGCAACCGGCAATCGTGCCCGCTCGCCAACTCGCGGTA
TGCCACGATCCGGTCGGACCCCGAAACAGGCGCGATGTACCTGTACATGA
AGACGGTGGAACGGGCGCACATGCCCAGCAAATGGTGGGAGCGGATACGA
CTGTCGTCGAACTACGCGAAGGCGCTGGAGCAGTTGGACGAGCGGCTGAT
CTACTGGCCGAAGTTCCTGGTGCACAAGTGCAAGCAGCGTCTGACGCGGC
TGACGCAGGTTGCGATTCGGATGAAGAAGTTGGCTAAGGAAGATGAGAGG
CTGGGTGAGAAGGTGGTGACGAAGTTGGCGCCGAAGATTCGGCGGAGAGA
GGAGGCCAGGGAACGCAAGGCAGAGAGTGCGGCGAAGATTGAGAGGGCAA
TTGAGAGGGAGCTGATTGAGCGGTTGAGGAGTGGTGCTTACGGAGATCGG
CCGTTGAATGTTGAGGAGGGCATTTGGAAGAAGGTGTTGCGTGGGTTGGA
GAGGAGCGGAGAGGGTGAGAGGGATGAGGATCTGGATGATGGGGAGGAGA
TTGAGTTTGAGGATGAGGAGGAGGAAGAGGAGGGTGTTGGTCAGGTTGAG
TATGTTAGTGATATTGATGAGGATGAAGAGGATTTGGAGGATATCGAGGA
TTGGATTGGTGAGGGGTCTGGCGACTCGAGTGACGATTATGATGATGAGA
GTGATGAGGATGAGGACAGTGATGAGGATGAGGATGACAGCAACCACTCT
GATGAGGAGGCGAAGAAGCCTGCGCCTGGCTTCAAGCGGAAGCGTCCTGC
TCCCCAGATTAAGCCGAGGAAGAAGGGCCCCCGTGTTGAGATCGAGTATG
AGACTGAGGGTGCTGGCAAGGAGAGCATCCTGGCTTGA
back to top

Coding sequence (CDS) from alignment at NKJJ01000003.1:455681..456818+

>CAN33_30445-T1 ID=CAN33_30445-T1|Name=CAN33_30445-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2205bp|location=Sequence derived from alignment at NKJJ01000003.1:455681..456818+ (Aspergillus niger FDAARGOS_311)
ATGTCGTCCGACGAGATTGTTTGGCAGGTTATCAACCAGCAATTCTGCGC
CTATAAGCTCAAAACCACTAAGAACCAAAACTTCTGCCGAAATGAATACA
ACGTTAGCGGACTCTGCAACCGGCAATCGTGCCCGCTCGCCAACTCGCGG
TATGCCACGATCCGGTCGGACCCCGAAACAGGCGCGATGTACCTGTACAT
GAAGACGGTGGAACGGGCGCACATGCCCAGCAAATGGTGGGAGCGGATAC
GACTGTCGTCGAACTACGCGAAGGCGCTGGAGCAGTTGGACGAGCGGCTG
ATCTACTGGCCGAAGTTCCTGGTGCACAAGTGCAAGCAGCGTCTGACGCG
GCTGACGCAGGTTGCGATTCGGATGAAGAAGTTGGCTAAGGAAGATGAGA
GGCTGGGTGAGAAGGTGGTGACGAAGTTGGCGCCGAAGATTCGGCGGAGA
GAGGAGGCCAGGGAACGCAAGGCAGAGAGTGCGGCGAAGATTGAGAGGGC
AATTGAGAGGGAGCTGATTGAGCGGTTGAGGAGTGGTGCTTACGGAGATC
GGCCGTTGAATGTTGAGGAGGGCATTTGGAAGAAGGTCAACCACTCTGAT
GAGGAGGCGAAGAAGCCTGCGCCTGGCTTCAAGCGGAAGCGTCCTGCTCC
CCAGATTAAGCCGAGGAAGAAGGGCCCCCGTGTTGAGATCGAGTATGAGA
CTGAGGGTGCTGGCAAGGAGAGCATCCTGGCTTGAATGTCGTCCGACGAG
ATTGTTTGGCAGGTTATCAACCAGCAATTCTGCGCCTATAAGCTCAAAAC
CACTAAGAACCAAAACTTCTGCCGAAATGAATACAACGTTAGCGGACTCT
GCAACCGGCAATCGTGCCCGCTCGCCAACTCGCGGTATGCCACGATCCGG
TCGGACCCCGAAACAGGCGCGATGTACCTGTACATGAAGACGGTGGAACG
GGCGCACATGCCCAGCAAATGGTGGGAGCGGATACGACTGTCGTCGAACT
ACGCGAAGGCGCTGGAGCAGTTGGACGAGCGGCTGATCTACTGGCCGAAG
TTCCTGGTGCACAAGTGCAAGCAGCGTCTGACGCGGCTGACGCAGGTTGC
GATTCGGATGAAGAAGTTGGCTAAGGAAGATGAGAGGCTGGGTGAGAAGG
TGGTGACGAAGTTGGCGCCGAAGATTCGGCGGAGAGAGGAGGCCAGGGAA
CGCAAGGCAGAGAGTGCGGCGAAGATTGAGAGGGCAATTGAGAGGGAGCT
GATTGAGCGGTTGAGGAGTGGTGCTTACGGAGATCGGCCGTTGAATGTTG
AGGAGGGCATTTGGAAGAAGGTCAACCACTCTGATGAGGAGGCGAAGAAG
CCTGCGCCTGGCTTCAAGCGGAAGCGTCCTGCTCCCCAGATTAAGCCGAG
GAAGAAGGGCCCCCGTGTTGAGATCGAGTATGAGACTGAGGGTGCTGGCA
AGGAGAGCATCCTGGCTTGAATGTCGTCCGACGAGATTGTTTGGCAGGTT
ATCAACCAGCAATTCTGCGCCTATAAGCTCAAAACCACTAAGAACCAAAA
CTTCTGCCGAAATGAATACAACGTTAGCGGACTCTGCAACCGGCAATCGT
GCCCGCTCGCCAACTCGCGGTATGCCACGATCCGGTCGGACCCCGAAACA
GGCGCGATGTACCTGTACATGAAGACGGTGGAACGGGCGCACATGCCCAG
CAAATGGTGGGAGCGGATACGACTGTCGTCGAACTACGCGAAGGCGCTGG
AGCAGTTGGACGAGCGGCTGATCTACTGGCCGAAGTTCCTGGTGCACAAG
TGCAAGCAGCGTCTGACGCGGCTGACGCAGGTTGCGATTCGGATGAAGAA
GTTGGCTAAGGAAGATGAGAGGCTGGGTGAGAAGGTGGTGACGAAGTTGG
CGCCGAAGATTCGGCGGAGAGAGGAGGCCAGGGAACGCAAGGCAGAGAGT
GCGGCGAAGATTGAGAGGGCAATTGAGAGGGAGCTGATTGAGCGGTTGAG
GAGTGGTGCTTACGGAGATCGGCCGTTGAATGTTGAGGAGGGCATTTGGA
AGAAGGTCAACCACTCTGATGAGGAGGCGAAGAAGCCTGCGCCTGGCTTC
AAGCGGAAGCGTCCTGCTCCCCAGATTAAGCCGAGGAAGAAGGGCCCCCG
TGTTGAGATCGAGTATGAGACTGAGGGTGCTGGCAAGGAGAGCATCCTGG
CTTGA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_30445CAN33_30445Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_30445-T1.exon1CAN33_30445-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_30445-T1.exon2CAN33_30445-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_30445-T1.exon3CAN33_30445-T1.exon3Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_30445-T1.cdsCAN33_30445-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_30445-T1CAN33_30445-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09264L3W
DBxrefInterPro:IPR029004
DBxrefInterPro:IPR006958
DBxrefPFAM:PF01778
DBxrefPFAM:PF04874
ProductRibosomal L28e family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000003.1supercontigNKJJ01000003.1:455681..456818 +
Powered by Drupal