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CAN33_31830-T1, CAN33_31830-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_31830-T1
Unique NameCAN33_31830-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000003.1:1319404..1320559-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_31830-T1 ID=CAN33_31830-T1|Name=CAN33_31830-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1156bp|location=Sequence derived from alignment at NKJJ01000003.1:1319404..1320559- (Aspergillus niger FDAARGOS_311)
ATGCACTCGTTTGCTTCTCTTCTCGCCTACGGCCTGGTCGCCGGCGCCAC
CTTCGCTTCTGCCTCTCCTATCGAAGCTCGAGACAGCTGCACGTTCACCA
CCGCTGCCGCTGCTAAAGCGGGCAAGGCGAAATGCTCTACTATCACCCTT
AACAACATCGAAGTTCCAGCTGGAACCACCCTCGACCTGACCGGTCTCAC
CAGCGGTACCAAGGTCATCTTCGAGGGCACCACGACCTTCCAGTACGAAG
AATGGGCAGGCCCCTTGATCTCCATGAGTGGCGAACATATCACCGTCACT
GGTGCCTCCGGCCACCTCATCAATTGCGATGGTGCGCGCTGGTGGGATGG
CAAGGGAACCAGCGGAAAGAAGAAGCCCAAGTTCTTTTACGCCCATGGCC
TTGACTCCTCGTCTATTACTGGATTAAACATCAAAAACACCCCCCTTATG
GCGTTTAGTGTCCAGGCGAATGACATTACGTTTACCGATGTTACCATCAA
TAATGCGGATGGCGACACCCAGGGTGGACACAACACTGATGCGTTCGATG
TTGGCAACTCGGTCGGGGTGAATATCATTAAGCCTTGGGTCCATAACCAG
GATGACTGTCTTGCGGTTAACTCTGGCGAGGTAAGCAGCTCTGCATATAT
GCTTGATTCGTAATTATATTGATATTCTATAGAACATCTGGTTCACCGGC
GGCACCTGCATTGGCGGCCACGGTCTCTCCATCGGCTCTGTCGGCGACCG
CTCCAACAACGTCGTCAAGAACGTCACCATCGAACACTCCACCGTGAGCA
ATTCCGAAAACGCCGTCCGAATTAAGACCATCTCTGGCGCCACTGGCTCC
GTGTCCGAGATTACGTACTCCAACATCGTCATGTCTGGCATCTCCGATTA
CGGCGTGGTCATTCAGCAGGATTACGAAGACGGCAAGCCTACGGGTAAGC
CGACGAACGGTGTCACTATTCAGGATGTTAAGCTGGAGAGCGTGACTGGT
AGCGTGGATAGTGGGGCTACTGAGATCTATCTTCTTTGCGGGTCTGGTAG
CTGCTCGGACTGGACCTGGGACGATGTGAAAGTTACCGGGGGAAGAAGTC
CACCGCTTGCAAGAACTTCCCTTCGGTGGCCTCTTGTTAGGCTGCTAGGT
TGGTGA
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Coding sequence (CDS) from alignment at NKJJ01000003.1:1319404..1320559-

>CAN33_31830-T1 ID=CAN33_31830-T1|Name=CAN33_31830-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2208bp|location=Sequence derived from alignment at NKJJ01000003.1:1319404..1320559- (Aspergillus niger FDAARGOS_311)
AACATCTGGTTCACCGGCGGCACCTGCATTGGCGGCCACGGTCTCTCCAT
CGGCTCTGTCGGCGACCGCTCCAACAACGTCGTCAAGAACGTCACCATCG
AACACTCCACCGTGAGCAATTCCGAAAACGCCGTCCGAATTAAGACCATC
TCTGGCGCCACTGGCTCCGTGTCCGAGATTACGTACTCCAACATCGTCAT
GTCTGGCATCTCCGATTACGGCGTGGTCATTCAGCAGGATTACGAAGACG
GCAAGCCTACGGGTAAGCCGACGAACGGTGTCACTATTCAGGATGTTAAG
CTGGAGAGCGTGACTGGTAGCGTGGATAGTGGGGCTACTGAGATCTATCT
TCTTTGCGGGTCTGGTAGCTGCTCGGACTGGACCTGGGACGATGTGAAAG
TTACCGGGGGAAGAAGTCCACCGCTTGCAAGAACTTCCCTTCGGTGGCCT
CTTGTTAGGCTGCTAGGTTGGTGAATGCACTCGTTTGCTTCTCTTCTCGC
CTACGGCCTGGTCGCCGGCGCCACCTTCGCTTCTGCCTCTCCTATCGAAG
CTCGAGACAGCTGCACGTTCACCACCGCTGCCGCTGCTAAAGCGGGCAAG
GCGAAATGCTCTACTATCACCCTTAACAACATCGAAGTTCCAGCTGGAAC
CACCCTCGACCTGACCGGTCTCACCAGCGGTACCAAGGTCATCTTCGAGG
GCACCACGACCTTCCAGTACGAAGAATGGGCAGGCCCCTTGATCTCCATG
AGTGGCGAACATATCACCGTCACTGGTGCCTCCGGCCACCTCATCAATTG
CGATGGTGCGCGCTGGTGGGATGGCAAGGGAACCAGCGGAAAGAAGAAGC
CCAAGTTCTTTTACGCCCATGGCCTTGACTCCTCGTCTATTACTGGATTA
AACATCAAAAACACCCCCCTTATGGCGTTTAGTGTCCAGGCGAATGACAT
TACGTTTACCGATGTTACCATCAATAATGCGGATGGCGACACCCAGGGTG
GACACAACACTGATGCGTTCGATGTTGGCAACTCGGTCGGGGTGAATATC
ATTAAGCCTTGGGTCCATAACCAGGATGACTGTCTTGCGGTTAACTCTGG
CGAGAACATCTGGTTCACCGGCGGCACCTGCATTGGCGGCCACGGTCTCT
CCATCGGCTCTGTCGGCGACCGCTCCAACAACGTCGTCAAGAACGTCACC
ATCGAACACTCCACCGTGAGCAATTCCGAAAACGCCGTCCGAATTAAGAC
CATCTCTGGCGCCACTGGCTCCGTGTCCGAGATTACGTACTCCAACATCG
TCATGTCTGGCATCTCCGATTACGGCGTGGTCATTCAGCAGGATTACGAA
GACGGCAAGCCTACGGGTAAGCCGACGAACGGTGTCACTATTCAGGATGT
TAAGCTGGAGAGCGTGACTGGTAGCGTGGATAGTGGGGCTACTGAGATCT
ATCTTCTTTGCGGGTCTGGTAGCTGCTCGGACTGGACCTGGGACGATGTG
AAAGTTACCGGGGGAAGAAGTCCACCGCTTGCAAGAACTTCCCTTCGGTG
GCCTCTTGTTAGGCTGCTAGGTTGGTGAATGCACTCGTTTGCTTCTCTTC
TCGCCTACGGCCTGGTCGCCGGCGCCACCTTCGCTTCTGCCTCTCCTATC
GAAGCTCGAGACAGCTGCACGTTCACCACCGCTGCCGCTGCTAAAGCGGG
CAAGGCGAAATGCTCTACTATCACCCTTAACAACATCGAAGTTCCAGCTG
GAACCACCCTCGACCTGACCGGTCTCACCAGCGGTACCAAGGTCATCTTC
GAGGGCACCACGACCTTCCAGTACGAAGAATGGGCAGGCCCCTTGATCTC
CATGAGTGGCGAACATATCACCGTCACTGGTGCCTCCGGCCACCTCATCA
ATTGCGATGGTGCGCGCTGGTGGGATGGCAAGGGAACCAGCGGAAAGAAG
AAGCCCAAGTTCTTTTACGCCCATGGCCTTGACTCCTCGTCTATTACTGG
ATTAAACATCAAAAACACCCCCCTTATGGCGTTTAGTGTCCAGGCGAATG
ACATTACGTTTACCGATGTTACCATCAATAATGCGGATGGCGACACCCAG
GGTGGACACAACACTGATGCGTTCGATGTTGGCAACTCGGTCGGGGTGAA
TATCATTAAGCCTTGGGTCCATAACCAGGATGACTGTCTTGCGGTTAACT
CTGGCGAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_31830CAN33_31830Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_31830-T1CAN33_31830-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_31830-T1.cdsCAN33_31830-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_31830-T1.exon2CAN33_31830-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_31830-T1.exon1CAN33_31830-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteSECRETED:SignalP(1-21)
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR012334
DBxrefInterPro:IPR006626
DBxrefPFAM:PF00295
ProductGlycosyl hydrolases family 28 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000003.1supercontigNKJJ01000003.1:1319404..1320559 -
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