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CAN33_32100-T1, CAN33_32100-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_32100-T1
Unique NameCAN33_32100-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000003.1:1470709..1471728+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_32100-T1 ID=CAN33_32100-T1|Name=CAN33_32100-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1020bp|location=Sequence derived from alignment at NKJJ01000003.1:1470709..1471728+ (Aspergillus niger FDAARGOS_311)
ATGGCTGCTAATTACTGGGCATCAACTCAACGCCGACACTGGCTCTTCAC
GAGAGAGAAGTTGGCAGAGATTCGGGAGAACTTTAGAGAGCGGGACATGG
TCGCTCATAGTCAGTTTCCTCTGCCGGATCAGAGGTTGCTGAACATCTAC
TTCAGTCAACGTAAGATAACATAGTATATATCCTAAATCGGTGAGCATCC
GAGCTCACCAGACCAACAGAACTCATCAAATTGGGGAAACGGATGTCTAC
TCGACAACAAGCACTTGCGACAGCGCAAGTCTATGTCAAGAGGTTCTACA
CCAAGAACGAGATTAGACATACAAACCCGTATCTTGTCGTCACAACTGCC
TTCTATCTGGCCTGTAAAATGGAAGAATGCCCTCAACATATTCGTTTTGT
CGTCGGAGAGGCTAGAGGTCTCTGGCCAGGTACGGAACACTCGCGTTAAT
GCACTTCGTGCGCTTCCCGCTGACGTGGCTACAGAGTTTATTGCCCCAGA
TGTTTCAAAACTAGGAGAATGCGAATTCTCTTTGATATCGGAAATGAACT
CTCAGCTTATTGTGCACCACCCATATCGAACTTTATCAGAACTCCAACCC
GAGCTGTCACTTACGTCAGATGAAGTTGCTCTTGCATGGTCTGTAATCAA
CGACCACTATCTCACCGACTTGCCGCTCTTATATCCGCCTCACGTCATCG
CTGTCATGGCGATTATCGTCGCCGTGGTCTTCAAGCCCAGCCAAACGAGC
TTTCACGGGTCAGCAGCGCCACTGGCCAGCGCGATGCGCGATGGGGGGAT
GAACATCCTTGGAGCATTGGGAGATAAGGGCGGCAACGGCCCTCCTCCCC
GCATTCAACGACTTATAGGATGGCTTGCCGAGAGCGAGGTGGACATCAAG
GCAGTCATAGAGTGTACTCAAGAGCTGGTGTCGCTTTACGAGGTCTGGGA
GCAATACAGCGAAAAGCATTGCAAGGAGCTTCTTGGACGGATGGTGAAGA
GCAAGAACCTGGACAAATGA
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Coding sequence (CDS) from alignment at NKJJ01000003.1:1470709..1471728+

>CAN33_32100-T1 ID=CAN33_32100-T1|Name=CAN33_32100-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2718bp|location=Sequence derived from alignment at NKJJ01000003.1:1470709..1471728+ (Aspergillus niger FDAARGOS_311)
ATGGCTGCTAATTACTGGGCATCAACTCAACGCCGACACTGGCTCTTCAC
GAGAGAGAAGTTGGCAGAGATTCGGGAGAACTTTAGAGAGCGGGACATGG
TCGCTCATAGTCAGTTTCCTCTGCCGGATCAGAGGTTGCTGAACATCTAC
TTCAGTCAACAACTCATCAAATTGGGGAAACGGATGTCTACTCGACAACA
AGCACTTGCGACAGCGCAAGTCTATGTCAAGAGGTTCTACACCAAGAACG
AGATTAGACATACAAACCCGTATCTTGTCGTCACAACTGCCTTCTATCTG
GCCTGTAAAATGGAAGAATGCCCTCAACATATTCGTTTTGTCGTCGGAGA
GGCTAGAGGTCTCTGGCCAGAGTTTATTGCCCCAGATGTTTCAAAACTAG
GAGAATGCGAATTCTCTTTGATATCGGAAATGAACTCTCAGCTTATTGTG
CACCACCCATATCGAACTTTATCAGAACTCCAACCCGAGCTGTCACTTAC
GTCAGATGAAGTTGCTCTTGCATGGTCTGTAATCAACGACCACTATCTCA
CCGACTTGCCGCTCTTATATCCGCCTCACGTCATCGCTGTCATGGCGATT
ATCGTCGCCGTGGTCTTCAAGCCCAGCCAAACGAGCTTTCACGGGTCAGC
AGCGCCACTGGCCAGCGCGATGCGCGATGGGGGGATGAACATCCTTGGAG
CATTGGGAGATAAGGGCGGCAACGGCCCTCCTCCCCGCATTCAACGACTT
ATAGGATGGCTTGCCGAGAGCGAGGTGGACATCAAGGCAGTCATAGAGTG
TACTCAAGAGCTGGTGTCGCTTTACGAGGTCTGGGAGCAATACAGCGAAA
AGCATTGCAAGGAGCTTCTTGGACGGATGGTGAAGAGCAAGAACCTGGAC
AAATGAATGGCTGCTAATTACTGGGCATCAACTCAACGCCGACACTGGCT
CTTCACGAGAGAGAAGTTGGCAGAGATTCGGGAGAACTTTAGAGAGCGGG
ACATGGTCGCTCATAGTCAGTTTCCTCTGCCGGATCAGAGGTTGCTGAAC
ATCTACTTCAGTCAACAACTCATCAAATTGGGGAAACGGATGTCTACTCG
ACAACAAGCACTTGCGACAGCGCAAGTCTATGTCAAGAGGTTCTACACCA
AGAACGAGATTAGACATACAAACCCGTATCTTGTCGTCACAACTGCCTTC
TATCTGGCCTGTAAAATGGAAGAATGCCCTCAACATATTCGTTTTGTCGT
CGGAGAGGCTAGAGGTCTCTGGCCAGAGTTTATTGCCCCAGATGTTTCAA
AACTAGGAGAATGCGAATTCTCTTTGATATCGGAAATGAACTCTCAGCTT
ATTGTGCACCACCCATATCGAACTTTATCAGAACTCCAACCCGAGCTGTC
ACTTACGTCAGATGAAGTTGCTCTTGCATGGTCTGTAATCAACGACCACT
ATCTCACCGACTTGCCGCTCTTATATCCGCCTCACGTCATCGCTGTCATG
GCGATTATCGTCGCCGTGGTCTTCAAGCCCAGCCAAACGAGCTTTCACGG
GTCAGCAGCGCCACTGGCCAGCGCGATGCGCGATGGGGGGATGAACATCC
TTGGAGCATTGGGAGATAAGGGCGGCAACGGCCCTCCTCCCCGCATTCAA
CGACTTATAGGATGGCTTGCCGAGAGCGAGGTGGACATCAAGGCAGTCAT
AGAGTGTACTCAAGAGCTGGTGTCGCTTTACGAGGTCTGGGAGCAATACA
GCGAAAAGCATTGCAAGGAGCTTCTTGGACGGATGGTGAAGAGCAAGAAC
CTGGACAAATGAATGGCTGCTAATTACTGGGCATCAACTCAACGCCGACA
CTGGCTCTTCACGAGAGAGAAGTTGGCAGAGATTCGGGAGAACTTTAGAG
AGCGGGACATGGTCGCTCATAGTCAGTTTCCTCTGCCGGATCAGAGGTTG
CTGAACATCTACTTCAGTCAACAACTCATCAAATTGGGGAAACGGATGTC
TACTCGACAACAAGCACTTGCGACAGCGCAAGTCTATGTCAAGAGGTTCT
ACACCAAGAACGAGATTAGACATACAAACCCGTATCTTGTCGTCACAACT
GCCTTCTATCTGGCCTGTAAAATGGAAGAATGCCCTCAACATATTCGTTT
TGTCGTCGGAGAGGCTAGAGGTCTCTGGCCAGAGTTTATTGCCCCAGATG
TTTCAAAACTAGGAGAATGCGAATTCTCTTTGATATCGGAAATGAACTCT
CAGCTTATTGTGCACCACCCATATCGAACTTTATCAGAACTCCAACCCGA
GCTGTCACTTACGTCAGATGAAGTTGCTCTTGCATGGTCTGTAATCAACG
ACCACTATCTCACCGACTTGCCGCTCTTATATCCGCCTCACGTCATCGCT
GTCATGGCGATTATCGTCGCCGTGGTCTTCAAGCCCAGCCAAACGAGCTT
TCACGGGTCAGCAGCGCCACTGGCCAGCGCGATGCGCGATGGGGGGATGA
ACATCCTTGGAGCATTGGGAGATAAGGGCGGCAACGGCCCTCCTCCCCGC
ATTCAACGACTTATAGGATGGCTTGCCGAGAGCGAGGTGGACATCAAGGC
AGTCATAGAGTGTACTCAAGAGCTGGTGTCGCTTTACGAGGTCTGGGAGC
AATACAGCGAAAAGCATTGCAAGGAGCTTCTTGGACGGATGGTGAAGAGC
AAGAACCTGGACAAATGA
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Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SSN8CAN33_32100Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_32100-T1.exon1CAN33_32100-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_32100-T1.exon2CAN33_32100-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_32100-T1.exon3CAN33_32100-T1.exon3Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_32100-T1.cdsCAN33_32100-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_32100-T1CAN33_32100-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09262K8C
DBxrefInterPro:IPR036915
DBxrefInterPro:IPR006671
DBxrefInterPro:IPR013763
DBxrefPFAM:PF00134
ProductRNA polymerase II holoenzyme cyclin-like subunit
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000003.1supercontigNKJJ01000003.1:1470709..1471728 +
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