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CAN33_32360-T1, CAN33_32360-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_32360-T1
Unique NameCAN33_32360-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000003.1:1648239..1649861+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_32360-T1 ID=CAN33_32360-T1|Name=CAN33_32360-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1623bp|location=Sequence derived from alignment at NKJJ01000003.1:1648239..1649861+ (Aspergillus niger FDAARGOS_311)
ATGTCTCTCGTGCCCGTCGACACCACTCTGCAAGTCCCACCTCCTGATCC
GGTTCAGAAGCCCCCTGAGGTGGCCATCACGCCCTGTGACCCATGGCCTG
CACCATACTATTTTGAAGGCGGCTTGCGCCGGGTGAAGCCCTACCACTAC
ACCTACAACACTTTTTGCAAGGAGCGCTGGCGGGGTCGTGAATTGGTGGA
CATTTTCCTGTCGGAGTTTCGCGACCGTCCCGCAGAGTACTACGTACGTT
CTCATCTCTTGGCTATTCTTTAAAGAATCATATACTGACATAGTTGTTCT
GGACCGCAGAGGAAAGCCCTACAAGATGGCCTTGTTGCCGTCAACGGCAC
GCCTGCTGGCCCCAATACCGTCGTCAAGAACGGCCAGATCATCTCGCATA
CCCTGCACCGTCACGAACCCCCCGTCACCGGGAAAGAGATTGGTATCATC
CACGAGGATGACGATCTGATTGTCATTGATAAGCCTGCCGGTGTGCCCGT
CCACTCCGCTGGTCGCTACCACTACAACTCCGTGCTCGAGATCATGCGCT
CTCAACGCCATCCGGAATGGGTCCCACGACCTTGCAACCGTTTGGACCGA
CTCACCTCCGGAGTCATGTTCCTCGGAAAGACCGCGAAAGCTGCAGAGAA
CATGACCGGAAAGCTCAAGGCCCGCACCCTCCAGAAGGAGTATGTGGCGC
GCGTCAAGGGAAAATTCCCTGACGGTGTCATCGTCTGCGATCAGCCCATC
ATGTCCGTGAGCCCAAAGGTAGGCTTGAACCGCGTTCGTGCCACTGGCAA
GGAGGCAAAGACCAAGTTCCGTCGCCTGGCGTATATCCCGCCTCAAGCTC
CGGAGCCTCAGAGCGCTTCCGACGCAGAGGGACGGGTGGCGACCCCACCC
CCGATCTACACCAACGAAGACGAAGGATACAGTATCGTCCACTGTCTGCC
ATTGACTGGCCGCACGCATCAGATCCGCGTGCATCTCCAGTTCCTCGGAC
ACCCGATCTCGAACGATCCCATCTACTCCAATCGCAAAGTCTTCGGACCC
GATCTCGGAAAGAACGAGACCAGCGACGAGCGCGACAACGAGCTCATTGA
TAAGCTATGTAATATTGGCAAGACTGAAGTCCCCGACACCGTAAGCTATC
GGACACACCTTACCACAGTGCCTCTGGTACCGCCAGGCACGGACAACTCT
GTTGTGGAGGAGATAATGTCGCGCGAGCACGAGGCCGCCGTGGAGAGATA
CCACAAGCGCAAAGGCGAGATGTTATCTGGCGAGAGATGCAAGATCTGCG
ACACAGAGCTCTACTCGGACCCTAGACCTGAGGATCTAGGCATCTTCCTC
CACGCCGCGGCGTACTCTGACAAAGAGGATGGCTGGAAATACACTAGCAA
GATGCCTACCTGGGCTCTGCCGCCTGATGGCGTGGAGGGACCGCGCGAGA
TGCCCGACTGGGTGTTTGTTCCCGAGGAAGAGGAGATTGTTATCGGACAT
GCTGTCTTGCCTGGCGCGGAGGACGGCTCGGAGTCGAATATCCCTGCTCT
TGTGCAGGGTGTCGGCCTAGTCGACATTTCGTCTGGTAGGAAGGCAGATG
CCGCTGCGCAGGCGACTGCTTGA
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Coding sequence (CDS) from alignment at NKJJ01000003.1:1648239..1649861+

>CAN33_32360-T1 ID=CAN33_32360-T1|Name=CAN33_32360-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3114bp|location=Sequence derived from alignment at NKJJ01000003.1:1648239..1649861+ (Aspergillus niger FDAARGOS_311)
ATGTCTCTCGTGCCCGTCGACACCACTCTGCAAGTCCCACCTCCTGATCC
GGTTCAGAAGCCCCCTGAGGTGGCCATCACGCCCTGTGACCCATGGCCTG
CACCATACTATTTTGAAGGCGGCTTGCGCCGGGTGAAGCCCTACCACTAC
ACCTACAACACTTTTTGCAAGGAGCGCTGGCGGGGTCGTGAATTGGTGGA
CATTTTCCTGTCGGAGTTTCGCGACCGTCCCGCAGAGTACTACAGGAAAG
CCCTACAAGATGGCCTTGTTGCCGTCAACGGCACGCCTGCTGGCCCCAAT
ACCGTCGTCAAGAACGGCCAGATCATCTCGCATACCCTGCACCGTCACGA
ACCCCCCGTCACCGGGAAAGAGATTGGTATCATCCACGAGGATGACGATC
TGATTGTCATTGATAAGCCTGCCGGTGTGCCCGTCCACTCCGCTGGTCGC
TACCACTACAACTCCGTGCTCGAGATCATGCGCTCTCAACGCCATCCGGA
ATGGGTCCCACGACCTTGCAACCGTTTGGACCGACTCACCTCCGGAGTCA
TGTTCCTCGGAAAGACCGCGAAAGCTGCAGAGAACATGACCGGAAAGCTC
AAGGCCCGCACCCTCCAGAAGGAGTATGTGGCGCGCGTCAAGGGAAAATT
CCCTGACGGTGTCATCGTCTGCGATCAGCCCATCATGTCCGTGAGCCCAA
AGGTAGGCTTGAACCGCGTTCGTGCCACTGGCAAGGAGGCAAAGACCAAG
TTCCGTCGCCTGGCGTATATCCCGCCTCAAGCTCCGGAGCCTCAGAGCGC
TTCCGACGCAGAGGGACGGGTGGCGACCCCACCCCCGATCTACACCAACG
AAGACGAAGGATACAGTATCGTCCACTGTCTGCCATTGACTGGCCGCACG
CATCAGATCCGCGTGCATCTCCAGTTCCTCGGACACCCGATCTCGAACGA
TCCCATCTACTCCAATCGCAAAGTCTTCGGACCCGATCTCGGAAAGAACG
AGACCAGCGACGAGCGCGACAACGAGCTCATTGATAAGCTATGTAATATT
GGCAAGACTGAAGTCCCCGACACCGTAAGCTATCGGACACACCTTACCAC
AGTGCCTCTGGTACCGCCAGGCACGGACAACTCTGTTGTGGAGGAGATAA
TGTCGCGCGAGCACGAGGCCGCCGTGGAGAGATACCACAAGCGCAAAGGC
GAGATGTTATCTGGCGAGAGATGCAAGATCTGCGACACAGAGCTCTACTC
GGACCCTAGACCTGAGGATCTAGGCATCTTCCTCCACGCCGCGGCGTACT
CTGACAAAGAGGATGGCTGGAAATACACTAGCAAGATGCCTACCTGGGCT
CTGCCGCCTGATGGCGTGGAGGGACCGCGCGAGATGCCCGACTGGGTGTT
TGTTCCCGAGGAAGAGGAGATTGTTATCGGACATGCTGTCTTGCCTGGCG
CGGAGGACGGCTCGGAGTCGAATATCCCTGCTCTTGTGCAGGGTGTCGGC
CTAGTCGACATTTCGTCTGGTAGGAAGGCAGATGCCGCTGCGCAGGCGAC
TGCTTGAATGTCTCTCGTGCCCGTCGACACCACTCTGCAAGTCCCACCTC
CTGATCCGGTTCAGAAGCCCCCTGAGGTGGCCATCACGCCCTGTGACCCA
TGGCCTGCACCATACTATTTTGAAGGCGGCTTGCGCCGGGTGAAGCCCTA
CCACTACACCTACAACACTTTTTGCAAGGAGCGCTGGCGGGGTCGTGAAT
TGGTGGACATTTTCCTGTCGGAGTTTCGCGACCGTCCCGCAGAGTACTAC
AGGAAAGCCCTACAAGATGGCCTTGTTGCCGTCAACGGCACGCCTGCTGG
CCCCAATACCGTCGTCAAGAACGGCCAGATCATCTCGCATACCCTGCACC
GTCACGAACCCCCCGTCACCGGGAAAGAGATTGGTATCATCCACGAGGAT
GACGATCTGATTGTCATTGATAAGCCTGCCGGTGTGCCCGTCCACTCCGC
TGGTCGCTACCACTACAACTCCGTGCTCGAGATCATGCGCTCTCAACGCC
ATCCGGAATGGGTCCCACGACCTTGCAACCGTTTGGACCGACTCACCTCC
GGAGTCATGTTCCTCGGAAAGACCGCGAAAGCTGCAGAGAACATGACCGG
AAAGCTCAAGGCCCGCACCCTCCAGAAGGAGTATGTGGCGCGCGTCAAGG
GAAAATTCCCTGACGGTGTCATCGTCTGCGATCAGCCCATCATGTCCGTG
AGCCCAAAGGTAGGCTTGAACCGCGTTCGTGCCACTGGCAAGGAGGCAAA
GACCAAGTTCCGTCGCCTGGCGTATATCCCGCCTCAAGCTCCGGAGCCTC
AGAGCGCTTCCGACGCAGAGGGACGGGTGGCGACCCCACCCCCGATCTAC
ACCAACGAAGACGAAGGATACAGTATCGTCCACTGTCTGCCATTGACTGG
CCGCACGCATCAGATCCGCGTGCATCTCCAGTTCCTCGGACACCCGATCT
CGAACGATCCCATCTACTCCAATCGCAAAGTCTTCGGACCCGATCTCGGA
AAGAACGAGACCAGCGACGAGCGCGACAACGAGCTCATTGATAAGCTATG
TAATATTGGCAAGACTGAAGTCCCCGACACCGTAAGCTATCGGACACACC
TTACCACAGTGCCTCTGGTACCGCCAGGCACGGACAACTCTGTTGTGGAG
GAGATAATGTCGCGCGAGCACGAGGCCGCCGTGGAGAGATACCACAAGCG
CAAAGGCGAGATGTTATCTGGCGAGAGATGCAAGATCTGCGACACAGAGC
TCTACTCGGACCCTAGACCTGAGGATCTAGGCATCTTCCTCCACGCCGCG
GCGTACTCTGACAAAGAGGATGGCTGGAAATACACTAGCAAGATGCCTAC
CTGGGCTCTGCCGCCTGATGGCGTGGAGGGACCGCGCGAGATGCCCGACT
GGGTGTTTGTTCCCGAGGAAGAGGAGATTGTTATCGGACATGCTGTCTTG
CCTGGCGCGGAGGACGGCTCGGAGTCGAATATCCCTGCTCTTGTGCAGGG
TGTCGGCCTAGTCGACATTTCGTCTGGTAGGAAGGCAGATGCCGCTGCGC
AGGCGACTGCTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0001522pseudouridine synthesis
GO:0009451RNA modification
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
GO:0009982pseudouridine synthase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_32360CAN33_32360Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_32360-T1.exon1CAN33_32360-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_32360-T1.exon2CAN33_32360-T1.exon2Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_32360-T1.cdsCAN33_32360-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_32360-T1CAN33_32360-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR020103
DBxrefInterPro:IPR002942
DBxrefInterPro:IPR006224
DBxrefInterPro:IPR006225
DBxrefInterPro:IPR006145
DBxrefPFAM:PF00849
Productpseudouridine synthase RluA family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000003.1supercontigNKJJ01000003.1:1648239..1649861 +
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