You are here

Home

CAN33_33225-T1, CAN33_33225-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_33225-T1
Unique NameCAN33_33225-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000007.1:278168..279389-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_33225-T1 ID=CAN33_33225-T1|Name=CAN33_33225-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1222bp|location=Sequence derived from alignment at NKJJ01000007.1:278168..279389- (Aspergillus niger FDAARGOS_311)
ATGCCGCCACCATCACTTCTGCAGCTCTGCACGGCGACTGCGATTAGGAA
CGTGAAACGTATGCAGAGCCCAATCCCACCTTGACAAGAGCCCATCGGTA
AACTGATACTAAGTGCTCGTGCAGAATTAAATGATATTGGCAACATTCCC
TATGTACTCGCTCGTCCATTTCTACTGAAAGTGGAGAGTCCTGAGAAACT
GGTGAGTCTGCAGCGGAACCCCCCCGTCCTTCGTCAGTAACCCTTTGGCT
AACAGTCAAACTCACCCCACAACACAGAGAACTCTGGAATTACAGTCCCC
ACATTTGATGCGAGATGACGAGGAACTCTGGCTGGAGTTCATCAAAAGAG
ATATCCCGCGATGGGACGAATACGATCTGCCTGAGAAACCCGATTGTTGG
TATGACGTATATTGTGACCTCCGGGAACAAGTCCAACGGGCAGTGGAAGA
GGATGCTGAAAAGCTGAAGATGGCTTTAGATGGCATCAGCTCGGAGCGCC
AGGAAAAAAGTGCCAAATTCGTTACCGATCGTCGAATCATCGGTCTCCCC
CGAGAGAGGCCGACCGCGAGGCAACGATATGCTTCGTACGATCGGAGACT
GGGCGGCTCGCCGACGTCGTCATCTTCCATGACCCCCTGGGCTTTTGGTA
GGCCAAGAGAAACAAAGAAAAAGAACAGCATATTTACAGCAACAAAGAGG
AATAATGTTCTTACTGTGCCAACAAAGCACCTTAATAACAGAGCTTCCCA
GGTCAGACAGGCTCCGCGGTCTCTGATCGAGGACCATATACGTCCTGCTG
AGCCCCCTGTCGCTCGACGAAAGGAGGCTCCAGCTCTGAGAGCGCCCGGT
CGGTCACGGCCCCAGATGAGTGCTCCCTCCACAAGCCAGAATAGTCTGGA
AGTTGGTCCCAGCTTGCGGGAAAGAGAGGCTCGTTTACGAGCAATAACCC
AATCGCATAGCCCTGCTGCAGCCAGTAAGCCTATGGCAGGGAGAAATGCA
CAGACATCGCTGCCAACAAGAGGTCCATCCGGATCTCTATCAGGGGTAGC
GGCCAAGAAACAGACATCCCATCCGCTCAGTAACAGTGCGACTGGCTCTC
ATCGGGGGTCTGCCGTAGAGGACATGCCAGCGTCTCCGCCACAACCACCC
CGTCCGGCAGTTGTCCGCAAACGTCCTGCCCCGAACCTCTTTATCCAACC
AAAGAAGAAGAAACTGAACTGA
back to top

Coding sequence (CDS) from alignment at NKJJ01000007.1:278168..279389-

>CAN33_33225-T1 ID=CAN33_33225-T1|Name=CAN33_33225-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3240bp|location=Sequence derived from alignment at NKJJ01000007.1:278168..279389- (Aspergillus niger FDAARGOS_311)
AGAACTCTGGAATTACAGTCCCCACATTTGATGCGAGATGACGAGGAACT
CTGGCTGGAGTTCATCAAAAGAGATATCCCGCGATGGGACGAATACGATC
TGCCTGAGAAACCCGATTGTTGGTATGACGTATATTGTGACCTCCGGGAA
CAAGTCCAACGGGCAGTGGAAGAGGATGCTGAAAAGCTGAAGATGGCTTT
AGATGGCATCAGCTCGGAGCGCCAGGAAAAAAGTGCCAAATTCGTTACCG
ATCGTCGAATCATCGGTCTCCCCCGAGAGAGGCCGACCGCGAGGCAACGA
TATGCTTCGTACGATCGGAGACTGGGCGGCTCGCCGACGTCGTCATCTTC
CATGACCCCCTGGGCTTTTGGTAGGCCAAGAGAAACAAAGAAAAAGAACA
GCATATTTACAGCAACAAAGAGGAATAATGTTCTTACTGTGCCAACAAAG
CACCTTAATAACAGAGCTTCCCAGGTCAGACAGGCTCCGCGGTCTCTGAT
CGAGGACCATATACGTCCTGCTGAGCCCCCTGTCGCTCGACGAAAGGAGG
CTCCAGCTCTGAGAGCGCCCGGTCGGTCACGGCCCCAGATGAGTGCTCCC
TCCACAAGCCAGAATAGTCTGGAAGTTGGTCCCAGCTTGCGGGAAAGAGA
GGCTCGTTTACGAGCAATAACCCAATCGCATAGCCCTGCTGCAGCCAGTA
AGCCTATGGCAGGGAGAAATGCACAGACATCGCTGCCAACAAGAGGTCCA
TCCGGATCTCTATCAGGGGTAGCGGCCAAGAAACAGACATCCCATCCGCT
CAGTAACAGTGCGACTGGCTCTCATCGGGGGTCTGCCGTAGAGGACATGC
CAGCGTCTCCGCCACAACCACCCCGTCCGGCAGTTGTCCGCAAACGTCCT
GCCCCGAACCTCTTTATCCAACCAAAGAAGAAGAAACTGAACTGAAATTA
AATGATATTGGCAACATTCCCTATGTACTCGCTCGTCCATTTCTACTGAA
AGTGGAGAGTCCTGAGAAACTGATGCCGCCACCATCACTTCTGCAGCTCT
GCACGGCGACTGCGATTAGGAACGTGAAACAGAACTCTGGAATTACAGTC
CCCACATTTGATGCGAGATGACGAGGAACTCTGGCTGGAGTTCATCAAAA
GAGATATCCCGCGATGGGACGAATACGATCTGCCTGAGAAACCCGATTGT
TGGTATGACGTATATTGTGACCTCCGGGAACAAGTCCAACGGGCAGTGGA
AGAGGATGCTGAAAAGCTGAAGATGGCTTTAGATGGCATCAGCTCGGAGC
GCCAGGAAAAAAGTGCCAAATTCGTTACCGATCGTCGAATCATCGGTCTC
CCCCGAGAGAGGCCGACCGCGAGGCAACGATATGCTTCGTACGATCGGAG
ACTGGGCGGCTCGCCGACGTCGTCATCTTCCATGACCCCCTGGGCTTTTG
GTAGGCCAAGAGAAACAAAGAAAAAGAACAGCATATTTACAGCAACAAAG
AGGAATAATGTTCTTACTGTGCCAACAAAGCACCTTAATAACAGAGCTTC
CCAGGTCAGACAGGCTCCGCGGTCTCTGATCGAGGACCATATACGTCCTG
CTGAGCCCCCTGTCGCTCGACGAAAGGAGGCTCCAGCTCTGAGAGCGCCC
GGTCGGTCACGGCCCCAGATGAGTGCTCCCTCCACAAGCCAGAATAGTCT
GGAAGTTGGTCCCAGCTTGCGGGAAAGAGAGGCTCGTTTACGAGCAATAA
CCCAATCGCATAGCCCTGCTGCAGCCAGTAAGCCTATGGCAGGGAGAAAT
GCACAGACATCGCTGCCAACAAGAGGTCCATCCGGATCTCTATCAGGGGT
AGCGGCCAAGAAACAGACATCCCATCCGCTCAGTAACAGTGCGACTGGCT
CTCATCGGGGGTCTGCCGTAGAGGACATGCCAGCGTCTCCGCCACAACCA
CCCCGTCCGGCAGTTGTCCGCAAACGTCCTGCCCCGAACCTCTTTATCCA
ACCAAAGAAGAAGAAACTGAACTGAAATTAAATGATATTGGCAACATTCC
CTATGTACTCGCTCGTCCATTTCTACTGAAAGTGGAGAGTCCTGAGAAAC
TGATGCCGCCACCATCACTTCTGCAGCTCTGCACGGCGACTGCGATTAGG
AACGTGAAACAGAACTCTGGAATTACAGTCCCCACATTTGATGCGAGATG
ACGAGGAACTCTGGCTGGAGTTCATCAAAAGAGATATCCCGCGATGGGAC
GAATACGATCTGCCTGAGAAACCCGATTGTTGGTATGACGTATATTGTGA
CCTCCGGGAACAAGTCCAACGGGCAGTGGAAGAGGATGCTGAAAAGCTGA
AGATGGCTTTAGATGGCATCAGCTCGGAGCGCCAGGAAAAAAGTGCCAAA
TTCGTTACCGATCGTCGAATCATCGGTCTCCCCCGAGAGAGGCCGACCGC
GAGGCAACGATATGCTTCGTACGATCGGAGACTGGGCGGCTCGCCGACGT
CGTCATCTTCCATGACCCCCTGGGCTTTTGGTAGGCCAAGAGAAACAAAG
AAAAAGAACAGCATATTTACAGCAACAAAGAGGAATAATGTTCTTACTGT
GCCAACAAAGCACCTTAATAACAGAGCTTCCCAGGTCAGACAGGCTCCGC
GGTCTCTGATCGAGGACCATATACGTCCTGCTGAGCCCCCTGTCGCTCGA
CGAAAGGAGGCTCCAGCTCTGAGAGCGCCCGGTCGGTCACGGCCCCAGAT
GAGTGCTCCCTCCACAAGCCAGAATAGTCTGGAAGTTGGTCCCAGCTTGC
GGGAAAGAGAGGCTCGTTTACGAGCAATAACCCAATCGCATAGCCCTGCT
GCAGCCAGTAAGCCTATGGCAGGGAGAAATGCACAGACATCGCTGCCAAC
AAGAGGTCCATCCGGATCTCTATCAGGGGTAGCGGCCAAGAAACAGACAT
CCCATCCGCTCAGTAACAGTGCGACTGGCTCTCATCGGGGGTCTGCCGTA
GAGGACATGCCAGCGTCTCCGCCACAACCACCCCGTCCGGCAGTTGTCCG
CAAACGTCCTGCCCCGAACCTCTTTATCCAACCAAAGAAGAAGAAACTGA
ACTGAAATTAAATGATATTGGCAACATTCCCTATGTACTCGCTCGTCCAT
TTCTACTGAAAGTGGAGAGTCCTGAGAAACTGATGCCGCCACCATCACTT
CTGCAGCTCTGCACGGCGACTGCGATTAGGAACGTGAAAC
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0070449elongin complex
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006357regulation of transcription by RNA polymerase II
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_33225CAN33_33225Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_33225-T1CAN33_33225-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_33225-T1.cdsCAN33_33225-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_33225-T1.exon3CAN33_33225-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_33225-T1.exon2CAN33_33225-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_33225-T1.exon1CAN33_33225-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
DBxrefInterPro:IPR010684
DBxrefPFAM:PF06881
ProductRNA polymerase II transcription factor SIII (Elongin) subunit A family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000007.1supercontigNKJJ01000007.1:278168..279389 -
Powered by Drupal