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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000007.1:307706..308357+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_33280-T1 ID=CAN33_33280-T1|Name=CAN33_33280-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=652bp|location=Sequence derived from alignment at NKJJ01000007.1:307706..308357+ (Aspergillus niger FDAARGOS_311)
ATGCCCCGCGCCCTCAAGCATCACGAAAAGAAACTCCTCCGCAAAGTCGA
CTTCCACGTCTACAAATCCGACAACAACCACCGGGAATCTCAAATCCGCA
CGCGCTATCACCTGCAAGACCCCCTCGACTACCGCAAATACAACCAGCTA
TGCGGATCCCTGCGTCAACTCGCGCACAAGTTGTCTGAGCTCGACCCCGA
GAGTGATCCCGTGCGCAAGAAGCTGGAATCCGAGGTGCTGGATAAGTTGT
TCCGCATGGGGATTCTGAAGCAGAGTCGCGAACAGGGGGCGGGACTTTCG
AGAGTCGAGAGGGAGGTTACGGTTAGTGCGTTTTGTAGGAGGAGGTTGGC
GGTTTGGATGACTAGGAGTGGGATGGTGGAGAATGTTAAGACTGTAAGTC
CTTCTCTTTTTTTTATCAACCTTCTTGGCGATGGGGTATTGGGTTGGGAT
TTAGGCTAATGAGGCTGGGTGGTGTTAGGCTGTCACTTTCATCGAGCAGG
GCCATGTTCGCGTCGGGACAGAGGTCGTTACGGATCCGGCGTACTTGGTT
ACGAGAAATCTGGAGGATTTCGTGACGTGGGTGGATAGCTCCAAGATTAA
GAGGAGTATTATGCAGTATCGGGATAATTTGGATGATTTTGATATGTTGT
GA back to topCoding sequence (CDS) from alignment at NKJJ01000007.1:307706..308357+ >CAN33_33280-T1 ID=CAN33_33280-T1|Name=CAN33_33280-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1134bp|location=Sequence derived from alignment at NKJJ01000007.1:307706..308357+ (Aspergillus niger FDAARGOS_311)
ATGCCCCGCGCCCTCAAGCATCACGAAAAGAAACTCCTCCGCAAAGTCGA
CTTCCACGTCTACAAATCCGACAACAACCACCGGGAATCTCAAATCCGCA
CGCGCTATCACCTGCAAGACCCCCTCGACTACCGCAAATACAACCAGCTA
TGCGGATCCCTGCGTCAACTCGCGCACAAGTTGTCTGAGCTCGACCCCGA
GAGTGATCCCGTGCGCAAGAAGCTGGAATCCGAGGTGCTGGATAAGTTGT
TCCGCATGGGGATTCTGAAGCAGAGTCGCGAACAGGGGGCGGGACTTTCG
AGAGTCGAGAGGGAGGTTACGGTTAGTGCGTTTTGTAGGAGGAGGTTGGC
GGTTTGGATGACTAGGAGTGGGATGGTGGAGAATGTTAAGACTGCTGTCA
CTTTCATCGAGCAGGGCCATGTTCGCGTCGGGACAGAGGTCGTTACGGAT
CCGGCGTACTTGGTTACGAGAAATCTGGAGGATTTCGTGACGTGGGTGGA
TAGCTCCAAGATTAAGAGGAGTATTATGCAGTATCGGGATAATTTGGATG
ATTTTGATATGTTGTGAATGCCCCGCGCCCTCAAGCATCACGAAAAGAAA
CTCCTCCGCAAAGTCGACTTCCACGTCTACAAATCCGACAACAACCACCG
GGAATCTCAAATCCGCACGCGCTATCACCTGCAAGACCCCCTCGACTACC
GCAAATACAACCAGCTATGCGGATCCCTGCGTCAACTCGCGCACAAGTTG
TCTGAGCTCGACCCCGAGAGTGATCCCGTGCGCAAGAAGCTGGAATCCGA
GGTGCTGGATAAGTTGTTCCGCATGGGGATTCTGAAGCAGAGTCGCGAAC
AGGGGGCGGGACTTTCGAGAGTCGAGAGGGAGGTTACGGTTAGTGCGTTT
TGTAGGAGGAGGTTGGCGGTTTGGATGACTAGGAGTGGGATGGTGGAGAA
TGTTAAGACTGCTGTCACTTTCATCGAGCAGGGCCATGTTCGCGTCGGGA
CAGAGGTCGTTACGGATCCGGCGTACTTGGTTACGAGAAATCTGGAGGAT
TTCGTGACGTGGGTGGATAGCTCCAAGATTAAGAGGAGTATTATGCAGTA
TCGGGATAATTTGGATGATTTTGATATGTTGTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0019843 | rRNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264Y0W |
| DBxref | InterPro:IPR036986 |
| DBxref | InterPro:IPR002942 |
| DBxref | InterPro:IPR001912 |
| DBxref | PFAM:PF01479 |
| DBxref | PFAM:PF00163 |
| Product | S4 domain family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000007.1 | supercontig | NKJJ01000007.1:307706..308357 + |
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