|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000007.1:334142..336210+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_33325-T1 ID=CAN33_33325-T1|Name=CAN33_33325-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=2069bp|location=Sequence derived from alignment at NKJJ01000007.1:334142..336210+ (Aspergillus niger FDAARGOS_311)
ATGGCTTTTTACGACGACCCTGGGAACGATTCCCAGCCATTTGGGAGGCC
CCCTAAATCCTACGAAGGAGGGATTGCTGGGCCGCGACGACCGAGTACGT
GTGATCCGATCCTTTGTCCCGATGCGTTCACATTTGTTTACCCCTCTACC
TTCGTTTTTCTTTCGGCGAAGTTAACCGTCGCTTGTAGGACTCGTGACGG
ACTATGGATCATCAATGGTGCAATGGATACGCACACGGAAACCCCGCTAT
AAAGGAGGTCATCAGATTGAGGTGGAAAGGCCTAGTGCAAGCTATGTTGT
GGATGTAAGTGCGACAGATTTCCGCGCACATTCTGATACAACTCTTCGAT
TAACACGAGCGGAATTTTCTTTGTTAGATGCTCCCCCCTCTTGCACGAGT
CCATTCTCCGGCGGATACTATACCAGTGCGGCATTTACATCAGTCGATTG
GAAAATCGAAGAAACCGATCACTGTCGTACGATGGACACCGGAAGGAAGA
CGCCTGCTAACGGGAGGCCACACGGGCGAATTCATGCTATGGAATGGAAC
TGCCTTCAACTTCGAAACTGTCATGGATGTGGGTGTCGCTCGGATACATT
AATCCCCTAGCCGAAGATTTTTGTTGCTGATGGTTGAATAGGCACATTAT
GATCAGCTACAAGCTGGAGTAACCTCCTTAGCTTGGTCCCACAGTCATGA
CTGGTTAATATCCGGAGGACAGAAGGGTGACGTGAAGTATTGGCGACCTA
ACTTTAACAACGTCGAGACGATCGATGACGCACATCACGATGCTGTACGC
GATTTGGCATGGTCACCAAGTGATACTAAATTCCTCTCCGCATCCGACGA
CACAACGCTGAAGATATTCGATTTCACCGCGAGAACTTGCGATACCGTTC
TCACCGGTCACAACTGGGATGTCAAATCCTGCGACTGGCATCCCACCAAA
GGTCTCCTTGTCTCTGGGTCCAAAGACCATCAGGTCAAGTTCTGGGATCC
GCGCACAGCAAGATGCTTGACAACGCTCCATAGCCACAAGAATACCGTCA
CAGCGACGAGGTTTTCCCGCGTAAACAATAACCTTCTAGCTACATCCTCT
CGGGATCAAACGGCGAGAGTTTTCGACTTGCGCATGATGCGAGATATTTG
TATCCTCCGAGGCCATGAGAAGCCCGTCTCCTCTCTAACATGGCACCCGA
TTCACAGCTCTCTCATATCTACAGGTAGTGAGGACGGGTCTCTATATCAC
TATTTGCTTGATGAACCAAACCTGCCCTCCGGGCAGATCCCTACAATTGC
GCCATATGACAGCAACGACCCGGCTAACACGCCGGCGCAGGTGATCTACC
CTGCCCACAAGGTACAGTACGCGCACGGTGCCACCATCTGGTCCCTCGAC
TGGCATCCTCTGGGTCATATTCTTGCATCCGGATCTAAAGATAACTTCAC
ACGGTTCTGGTCCCGTGCCAGACCCGGAGAGACTAGTTACATGAAGGATA
GGTTCCACATCGGAGAAGAGGCGGCGGAGGCCCAGGGTACATGGAGCCGG
GGCTTCGGACGGCGGCAGATGCGTGAAGAGGAAGAACAAGAACTTCAGGA
TGAGGCAGAGAGCTTGGTCGATCAGAAGAAACCGGCCGGAATGTCATCTC
TTCCCGGAATTCAATTCGCACCACCCGGCGCCGCACCACAGCCAGACGGG
ATGGGTTCGATACTGCCAGGAATTGGGGCTCCCCAGCCCCCACCCCAGCC
GGGGTTTTCCACTTCAATGCCGCAAATGGATCCTGGGCGTCTAGCAGCTC
TTTTGTCCAATCAACCGCCCCCTCAGCCGAACAATTTCCCTCCCACAACG
GGACTGCCAGGGTTTCCCATGCACCCTGCTATGTCGGGGACACCTCCGGT
GAACGTTGACCTGGCAGAACTGCAGAAGCAGCTTCTTTCTCAAGGAATCT
CGCTGCCCCAGAACTTTCCGCCGCCAAATTTTCCTGGCATGCCCGGGGCC
TTCCCGGCCTGCAAGGGAGCAGTACGCCCGATCACGGATATGGAAGATGA
TTCCAGCTGTGGTCCATAG back to topCoding sequence (CDS) from alignment at NKJJ01000007.1:334142..336210+ >CAN33_33325-T1 ID=CAN33_33325-T1|Name=CAN33_33325-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=7356bp|location=Sequence derived from alignment at NKJJ01000007.1:334142..336210+ (Aspergillus niger FDAARGOS_311)
ATGGCTTTTTACGACGACCCTGGGAACGATTCCCAGCCATTTGGGAGGCC
CCCTAAATCCTACGAAGGAGGGATTGCTGGGCCGCGACGACCGAGACTCG
TGACGGACTATGGATCATCAATGGTGCAATGGATACGCACACGGAAACCC
CGCTATAAAGGAGGTCATCAGATTGAGGTGGAAAGGCCTAGTGCAAGCTA
TGTTGTGGATATGCTCCCCCCTCTTGCACGAGTCCATTCTCCGGCGGATA
CTATACCAGTGCGGCATTTACATCAGTCGATTGGAAAATCGAAGAAACCG
ATCACTGTCGTACGATGGACACCGGAAGGAAGACGCCTGCTAACGGGAGG
CCACACGGGCGAATTCATGCTATGGAATGGAACTGCCTTCAACTTCGAAA
CTGTCATGGATGCACATTATGATCAGCTACAAGCTGGAGTAACCTCCTTA
GCTTGGTCCCACAGTCATGACTGGTTAATATCCGGAGGACAGAAGGGTGA
CGTGAAGTATTGGCGACCTAACTTTAACAACGTCGAGACGATCGATGACG
CACATCACGATGCTGTACGCGATTTGGCATGGTCACCAAGTGATACTAAA
TTCCTCTCCGCATCCGACGACACAACGCTGAAGATATTCGATTTCACCGC
GAGAACTTGCGATACCGTTCTCACCGGTCACAACTGGGATGTCAAATCCT
GCGACTGGCATCCCACCAAAGGTCTCCTTGTCTCTGGGTCCAAAGACCAT
CAGGTCAAGTTCTGGGATCCGCGCACAGCAAGATGCTTGACAACGCTCCA
TAGCCACAAGAATACCGTCACAGCGACGAGGTTTTCCCGCGTAAACAATA
ACCTTCTAGCTACATCCTCTCGGGATCAAACGGCGAGAGTTTTCGACTTG
CGCATGATGCGAGATATTTGTATCCTCCGAGGCCATGAGAAGCCCGTCTC
CTCTCTAACATGGCACCCGATTCACAGCTCTCTCATATCTACAGGTAGTG
AGGACGGGTCTCTATATCACTATTTGCTTGATGAACCAAACCTGCCCTCC
GGGCAGATCCCTACAATTGCGCCATATGACAGCAACGACCCGGCTAACAC
GCCGGCGCAGGTGATCTACCCTGCCCACAAGGTACAGTACGCGCACGGTG
CCACCATCTGGTCCCTCGACTGGCATCCTCTGGGTCATATTCTTGCATCC
GGATCTAAAGATAACTTCACACGGTTCTGGTCCCGTGCCAGACCCGGAGA
GACTAGTTACATGAAGGATAGGTTCCACATCGGAGAAGAGGCGGCGGAGG
CCCAGGGTACATGGAGCCGGGGCTTCGGACGGCGGCAGATGCGTGAAGAG
GAAGAACAAGAACTTCAGGATGAGGCAGAGAGCTTGGTCGATCAGAAGAA
ACCGGCCGGAATGTCATCTCTTCCCGGAATTCAATTCGCACCACCCGGCG
CCGCACCACAGCCAGACGGGATGGGTTCGATACTGCCAGGAATTGGGGCT
CCCCAGCCCCCACCCCAGCCGGGGTTTTCCACTTCAATGCCGCAAATGGA
TCCTGGGCGTCTAGCAGCTCTTTTGTCCAATCAACCGCCCCCTCAGCCGA
ACAATTTCCCTCCCACAACGGGACTGCCAGGGTTTCCCATGCACCCTGCT
ATGTCGGGGACACCTCCGGTGAACGTTGACCTGGCAGAACTGCAGAAGCA
GCTTCTTTCTCAAGGAATCTCGCTGCCCCAGAACTTTCCGCCGCCAAATT
TTCCTGGCATGCCCGGGGCCTTCCCGGCCTGCAAGGGAGCAGTACGCCCG
ATCACGGATATGGAAGATGATTCCAGCTGTGGTCCATAGATGGCTTTTTA
CGACGACCCTGGGAACGATTCCCAGCCATTTGGGAGGCCCCCTAAATCCT
ACGAAGGAGGGATTGCTGGGCCGCGACGACCGAGACTCGTGACGGACTAT
GGATCATCAATGGTGCAATGGATACGCACACGGAAACCCCGCTATAAAGG
AGGTCATCAGATTGAGGTGGAAAGGCCTAGTGCAAGCTATGTTGTGGATA
TGCTCCCCCCTCTTGCACGAGTCCATTCTCCGGCGGATACTATACCAGTG
CGGCATTTACATCAGTCGATTGGAAAATCGAAGAAACCGATCACTGTCGT
ACGATGGACACCGGAAGGAAGACGCCTGCTAACGGGAGGCCACACGGGCG
AATTCATGCTATGGAATGGAACTGCCTTCAACTTCGAAACTGTCATGGAT
GCACATTATGATCAGCTACAAGCTGGAGTAACCTCCTTAGCTTGGTCCCA
CAGTCATGACTGGTTAATATCCGGAGGACAGAAGGGTGACGTGAAGTATT
GGCGACCTAACTTTAACAACGTCGAGACGATCGATGACGCACATCACGAT
GCTGTACGCGATTTGGCATGGTCACCAAGTGATACTAAATTCCTCTCCGC
ATCCGACGACACAACGCTGAAGATATTCGATTTCACCGCGAGAACTTGCG
ATACCGTTCTCACCGGTCACAACTGGGATGTCAAATCCTGCGACTGGCAT
CCCACCAAAGGTCTCCTTGTCTCTGGGTCCAAAGACCATCAGGTCAAGTT
CTGGGATCCGCGCACAGCAAGATGCTTGACAACGCTCCATAGCCACAAGA
ATACCGTCACAGCGACGAGGTTTTCCCGCGTAAACAATAACCTTCTAGCT
ACATCCTCTCGGGATCAAACGGCGAGAGTTTTCGACTTGCGCATGATGCG
AGATATTTGTATCCTCCGAGGCCATGAGAAGCCCGTCTCCTCTCTAACAT
GGCACCCGATTCACAGCTCTCTCATATCTACAGGTAGTGAGGACGGGTCT
CTATATCACTATTTGCTTGATGAACCAAACCTGCCCTCCGGGCAGATCCC
TACAATTGCGCCATATGACAGCAACGACCCGGCTAACACGCCGGCGCAGG
TGATCTACCCTGCCCACAAGGTACAGTACGCGCACGGTGCCACCATCTGG
TCCCTCGACTGGCATCCTCTGGGTCATATTCTTGCATCCGGATCTAAAGA
TAACTTCACACGGTTCTGGTCCCGTGCCAGACCCGGAGAGACTAGTTACA
TGAAGGATAGGTTCCACATCGGAGAAGAGGCGGCGGAGGCCCAGGGTACA
TGGAGCCGGGGCTTCGGACGGCGGCAGATGCGTGAAGAGGAAGAACAAGA
ACTTCAGGATGAGGCAGAGAGCTTGGTCGATCAGAAGAAACCGGCCGGAA
TGTCATCTCTTCCCGGAATTCAATTCGCACCACCCGGCGCCGCACCACAG
CCAGACGGGATGGGTTCGATACTGCCAGGAATTGGGGCTCCCCAGCCCCC
ACCCCAGCCGGGGTTTTCCACTTCAATGCCGCAAATGGATCCTGGGCGTC
TAGCAGCTCTTTTGTCCAATCAACCGCCCCCTCAGCCGAACAATTTCCCT
CCCACAACGGGACTGCCAGGGTTTCCCATGCACCCTGCTATGTCGGGGAC
ACCTCCGGTGAACGTTGACCTGGCAGAACTGCAGAAGCAGCTTCTTTCTC
AAGGAATCTCGCTGCCCCAGAACTTTCCGCCGCCAAATTTTCCTGGCATG
CCCGGGGCCTTCCCGGCCTGCAAGGGAGCAGTACGCCCGATCACGGATAT
GGAAGATGATTCCAGCTGTGGTCCATAGATGGCTTTTTACGACGACCCTG
GGAACGATTCCCAGCCATTTGGGAGGCCCCCTAAATCCTACGAAGGAGGG
ATTGCTGGGCCGCGACGACCGAGACTCGTGACGGACTATGGATCATCAAT
GGTGCAATGGATACGCACACGGAAACCCCGCTATAAAGGAGGTCATCAGA
TTGAGGTGGAAAGGCCTAGTGCAAGCTATGTTGTGGATATGCTCCCCCCT
CTTGCACGAGTCCATTCTCCGGCGGATACTATACCAGTGCGGCATTTACA
TCAGTCGATTGGAAAATCGAAGAAACCGATCACTGTCGTACGATGGACAC
CGGAAGGAAGACGCCTGCTAACGGGAGGCCACACGGGCGAATTCATGCTA
TGGAATGGAACTGCCTTCAACTTCGAAACTGTCATGGATGCACATTATGA
TCAGCTACAAGCTGGAGTAACCTCCTTAGCTTGGTCCCACAGTCATGACT
GGTTAATATCCGGAGGACAGAAGGGTGACGTGAAGTATTGGCGACCTAAC
TTTAACAACGTCGAGACGATCGATGACGCACATCACGATGCTGTACGCGA
TTTGGCATGGTCACCAAGTGATACTAAATTCCTCTCCGCATCCGACGACA
CAACGCTGAAGATATTCGATTTCACCGCGAGAACTTGCGATACCGTTCTC
ACCGGTCACAACTGGGATGTCAAATCCTGCGACTGGCATCCCACCAAAGG
TCTCCTTGTCTCTGGGTCCAAAGACCATCAGGTCAAGTTCTGGGATCCGC
GCACAGCAAGATGCTTGACAACGCTCCATAGCCACAAGAATACCGTCACA
GCGACGAGGTTTTCCCGCGTAAACAATAACCTTCTAGCTACATCCTCTCG
GGATCAAACGGCGAGAGTTTTCGACTTGCGCATGATGCGAGATATTTGTA
TCCTCCGAGGCCATGAGAAGCCCGTCTCCTCTCTAACATGGCACCCGATT
CACAGCTCTCTCATATCTACAGGTAGTGAGGACGGGTCTCTATATCACTA
TTTGCTTGATGAACCAAACCTGCCCTCCGGGCAGATCCCTACAATTGCGC
CATATGACAGCAACGACCCGGCTAACACGCCGGCGCAGGTGATCTACCCT
GCCCACAAGGTACAGTACGCGCACGGTGCCACCATCTGGTCCCTCGACTG
GCATCCTCTGGGTCATATTCTTGCATCCGGATCTAAAGATAACTTCACAC
GGTTCTGGTCCCGTGCCAGACCCGGAGAGACTAGTTACATGAAGGATAGG
TTCCACATCGGAGAAGAGGCGGCGGAGGCCCAGGGTACATGGAGCCGGGG
CTTCGGACGGCGGCAGATGCGTGAAGAGGAAGAACAAGAACTTCAGGATG
AGGCAGAGAGCTTGGTCGATCAGAAGAAACCGGCCGGAATGTCATCTCTT
CCCGGAATTCAATTCGCACCACCCGGCGCCGCACCACAGCCAGACGGGAT
GGGTTCGATACTGCCAGGAATTGGGGCTCCCCAGCCCCCACCCCAGCCGG
GGTTTTCCACTTCAATGCCGCAAATGGATCCTGGGCGTCTAGCAGCTCTT
TTGTCCAATCAACCGCCCCCTCAGCCGAACAATTTCCCTCCCACAACGGG
ACTGCCAGGGTTTCCCATGCACCCTGCTATGTCGGGGACACCTCCGGTGA
ACGTTGACCTGGCAGAACTGCAGAAGCAGCTTCTTTCTCAAGGAATCTCG
CTGCCCCAGAACTTTCCGCCGCCAAATTTTCCTGGCATGCCCGGGGCCTT
CCCGGCCTGCAAGGGAGCAGTACGCCCGATCACGGATATGGAAGATGATT
CCAGCTGTGGTCCATAGATGGCTTTTTACGACGACCCTGGGAACGATTCC
CAGCCATTTGGGAGGCCCCCTAAATCCTACGAAGGAGGGATTGCTGGGCC
GCGACGACCGAGACTCGTGACGGACTATGGATCATCAATGGTGCAATGGA
TACGCACACGGAAACCCCGCTATAAAGGAGGTCATCAGATTGAGGTGGAA
AGGCCTAGTGCAAGCTATGTTGTGGATATGCTCCCCCCTCTTGCACGAGT
CCATTCTCCGGCGGATACTATACCAGTGCGGCATTTACATCAGTCGATTG
GAAAATCGAAGAAACCGATCACTGTCGTACGATGGACACCGGAAGGAAGA
CGCCTGCTAACGGGAGGCCACACGGGCGAATTCATGCTATGGAATGGAAC
TGCCTTCAACTTCGAAACTGTCATGGATGCACATTATGATCAGCTACAAG
CTGGAGTAACCTCCTTAGCTTGGTCCCACAGTCATGACTGGTTAATATCC
GGAGGACAGAAGGGTGACGTGAAGTATTGGCGACCTAACTTTAACAACGT
CGAGACGATCGATGACGCACATCACGATGCTGTACGCGATTTGGCATGGT
CACCAAGTGATACTAAATTCCTCTCCGCATCCGACGACACAACGCTGAAG
ATATTCGATTTCACCGCGAGAACTTGCGATACCGTTCTCACCGGTCACAA
CTGGGATGTCAAATCCTGCGACTGGCATCCCACCAAAGGTCTCCTTGTCT
CTGGGTCCAAAGACCATCAGGTCAAGTTCTGGGATCCGCGCACAGCAAGA
TGCTTGACAACGCTCCATAGCCACAAGAATACCGTCACAGCGACGAGGTT
TTCCCGCGTAAACAATAACCTTCTAGCTACATCCTCTCGGGATCAAACGG
CGAGAGTTTTCGACTTGCGCATGATGCGAGATATTTGTATCCTCCGAGGC
CATGAGAAGCCCGTCTCCTCTCTAACATGGCACCCGATTCACAGCTCTCT
CATATCTACAGGTAGTGAGGACGGGTCTCTATATCACTATTTGCTTGATG
AACCAAACCTGCCCTCCGGGCAGATCCCTACAATTGCGCCATATGACAGC
AACGACCCGGCTAACACGCCGGCGCAGGTGATCTACCCTGCCCACAAGGT
ACAGTACGCGCACGGTGCCACCATCTGGTCCCTCGACTGGCATCCTCTGG
GTCATATTCTTGCATCCGGATCTAAAGATAACTTCACACGGTTCTGGTCC
CGTGCCAGACCCGGAGAGACTAGTTACATGAAGGATAGGTTCCACATCGG
AGAAGAGGCGGCGGAGGCCCAGGGTACATGGAGCCGGGGCTTCGGACGGC
GGCAGATGCGTGAAGAGGAAGAACAAGAACTTCAGGATGAGGCAGAGAGC
TTGGTCGATCAGAAGAAACCGGCCGGAATGTCATCTCTTCCCGGAATTCA
ATTCGCACCACCCGGCGCCGCACCACAGCCAGACGGGATGGGTTCGATAC
TGCCAGGAATTGGGGCTCCCCAGCCCCCACCCCAGCCGGGGTTTTCCACT
TCAATGCCGCAAATGGATCCTGGGCGTCTAGCAGCTCTTTTGTCCAATCA
ACCGCCCCCTCAGCCGAACAATTTCCCTCCCACAACGGGACTGCCAGGGT
TTCCCATGCACCCTGCTATGTCGGGGACACCTCCGGTGAACGTTGACCTG
GCAGAACTGCAGAAGCAGCTTCTTTCTCAAGGAATCTCGCTGCCCCAGAA
CTTTCCGCCGCCAAATTTTCCTGGCATGCCCGGGGCCTTCCCGGCCTGCA
AGGGAGCAGTACGCCCGATCACGGATATGGAAGATGATTCCAGCTGTGGT
CCATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09261LPY |
| DBxref | InterPro:IPR036322 |
| DBxref | InterPro:IPR017986 |
| DBxref | InterPro:IPR015943 |
| DBxref | InterPro:IPR001680 |
| DBxref | PFAM:PF00400 |
| DBxref | PFAM:PF12894 |
| Product | pre-mRNA cleavage and polyadenylation factor (CPF) complex subunit |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000007.1 | supercontig | NKJJ01000007.1:334142..336210 + |
|
