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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000007.1:354087..355588- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_33350-T1 ID=CAN33_33350-T1|Name=CAN33_33350-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1502bp|location=Sequence derived from alignment at NKJJ01000007.1:354087..355588- (Aspergillus niger FDAARGOS_311)
ATGGATCTCGCAAACACCCTTATTCGCAGCGTCGTGCGCGCCTTCTACGA
GACCCGCCACATCCTCGTAGTAGATGCGCTCTTCATCCACTCCGTGTACG
TCCCGCACCAATATCATCGCATCGCAACAGACACTCCATACTAACCAGAT
GATTCTATAGTCTGCACGCAGAAGATCTCGCATTTCTTCTAGGCATGCAA
CAAAAAGACTTACGGAAACTCTGCGCCAAGTTGCGCGAAGATCGGCTCAT
CTCCGTGTAAGCTACATCTACACCTACACCAGTGTCACCACGAAGGAACC
ACCCTCACTAACATCCAACCCAAAAAAAACAGGAGCACGCGCGCTGAAAT
TCGCGATGGCTCAACACGTCCCGTTAACCGCGAATACTACTACATCCCAC
TGCACCCCGTCGTCGACGCGATCAAATACAAAGTCTCGAAACTCACCTCC
ACAATAAAAGCACAATACACACCAAGCCAAGAGCGCAAAGAATACATCTG
CCTCCGCTGCGGCTCCGAATGGACCGAACTCGACGTCCTCAGTCTCTACA
GCGAAGAAGGCTTCGAATGCCAAAACTGCGGGGCGATCCTCGAACGCACC
GAGGACGTCAAAGGCGCCGAAGGCATAGACAGAACCGGACATGAGAAAAA
CAGCAAACTAATGAACCAACTGGACACGATGCTCAAACTCCTCAAACAAA
TCGACTCCGTCGAAATCCCCCCAACGACTTCGACACGGCCTGGGACCATA
AAATCGACGTCGTCCGGAACCAGCAAACCCACCCCACACGAGCGGCAGTC
ATCGTGCCCTCGAAGCAACAACAAGAAGCCGTGCGCGGCAACACCAAGAC
CGACGCCACCGCTCTCGAAATTTCCCTCACCTCTAGCGAAGAGAAATCCG
CCGCCGAACAAGCCGCCGAAGCGGCGCGCAAAGCGGCAGTCGAGAAACAG
AATGCCCTGCCAGTCTGGCACACCCACTCCACGGTGTCCACGTCCGCGGG
CAACGGGCCGCATGTTAAATCTGAGACAGACATCGACATCAAACCGGAGA
TCAAGCCCGAAGACGAAGACCGGAAACCGGAAATCAACGGTCTGGATGAC
AAGGTCGCGGCTTACTATGCTGAAATGGAGCGTGAGAAGGCCCTCCAGGC
GCAAGAAGATGCAAGCAGTGCAGAGGAAGATTCGGATGAGTTTGATGAGT
TCGAGGATGTGGGTGTGTCAGCTAGTGATGCGGCTGCTTCTCCTGCTGTC
AATGCTACGCCTACGCCTGGCGGGGGCCCTACTAGTGCGCCGATGCAGCA
GACTTCGACTACGTCTTCGGTTGGTATCAAGCGGGAGTTAGATACGGATT
ACTCGAGCGTCAGTACATCTCAGACGGCAGCGGCGACGCCAGCTACGGGC
GGAGAGGAAGGGCCGACGGCGAAGAAGATCAAGACTGAACCGGAGGTTAA
GAAAGAAGAAGAGTCCGACGAGGACGATGATGAGGAGTTTGAAGATGTGT
AG back to topCoding sequence (CDS) from alignment at NKJJ01000007.1:354087..355588- >CAN33_33350-T1 ID=CAN33_33350-T1|Name=CAN33_33350-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=6120bp|location=Sequence derived from alignment at NKJJ01000007.1:354087..355588- (Aspergillus niger FDAARGOS_311)
GTCGCGGCTTACTATGCTGAAATGGAGCGTGAGAAGGCCCTCCAGGCGCA
AGAAGATGCAAGCAGTGCAGAGGAAGATTCGGATGAGTTTGATGAGTTCG
AGGATGTGGGTGTGTCAGCTAGTGATGCGGCTGCTTCTCCTGCTGTCAAT
GCTACGCCTACGCCTGGCGGGGGCCCTACTAGTGCGCCGATGCAGCAGAC
TTCGACTACGTCTTCGGTTGGTATCAAGCGGGAGTTAGATACGGATTACT
CGAGCGTCAGTACATCTCAGACGGCAGCGGCGACGCCAGCTACGGGCGGA
GAGGAAGGGCCGACGGCGAAGAAGATCAAGACTGAACCGGAGGTTAAGAA
AGAAGAAGAGTCCGACGAGGACGATGATGAGGAGTTTGAAGATGTGTAGC
AAACTAATGAACCAACTGGACACGATGCTCAAACTCCTCAAACAAATCGA
CTCCGTCGAAATCCCCCCAACGACTTCGACACGGCCTGGGACCATAAAAT
CGACGTCGTCCGGAACCAGCAAACCCACCCCACACGAGCGGCAGTCATCG
TGCCCTCGAAGCAACAACAAGAAGCCGTGCGCGGCAACACCAAGACCGAC
GCCACCGCTCTCGAAATTTCCCTCACCTCTAGCGAAGAGAAATCCGCCGC
CGAACAAGCCGCCGAAGCGGCGCGCAAAGCGGCAGTCGAGAAACAGAATG
CCCTGCCAGTCTGGCACACCCACTCCACGGTGTCCACGTCCGCGGGCAAC
GGGCCGCATGAGCACGCGCGCTGAAATTCGCGATGGCTCAACACGTCCCG
TTAACCGCGAATACTACTACATCCCACTGCACCCCGTCGTCGACGCGATC
AAATACAAAGTCTCGAAACTCACCTCCACAATAAAAGCACAATACACACC
AAGCCAAGAGCGCAAAGAATACATCTGCCTCCGCTGCGGCTCCGAATGGA
CCGAACTCGACGTCCTCAGTCTCTACAGCGAAGAAGGCTTCGAATGCCAA
AACTGCGGGGCGATCCTCGAACGCACCGAGGACTCTGCACGCAGAAGATC
TCGCATTTCTTCTAGGCATGCAACAAAAAGACTTACGGAAACTCTGCGCC
AAGTTGCGCGAAGATCGGCTCATCTCCGTATGGATCTCGCAAACACCCTT
ATTCGCAGCGTCGTGCGCGCCTTCTACGAGACCCGCCACATCCTCGTAGT
AGATGCGCTCTTCATCCACTCCGTGTCGCGGCTTACTATGCTGAAATGGA
GCGTGAGAAGGCCCTCCAGGCGCAAGAAGATGCAAGCAGTGCAGAGGAAG
ATTCGGATGAGTTTGATGAGTTCGAGGATGTGGGTGTGTCAGCTAGTGAT
GCGGCTGCTTCTCCTGCTGTCAATGCTACGCCTACGCCTGGCGGGGGCCC
TACTAGTGCGCCGATGCAGCAGACTTCGACTACGTCTTCGGTTGGTATCA
AGCGGGAGTTAGATACGGATTACTCGAGCGTCAGTACATCTCAGACGGCA
GCGGCGACGCCAGCTACGGGCGGAGAGGAAGGGCCGACGGCGAAGAAGAT
CAAGACTGAACCGGAGGTTAAGAAAGAAGAAGAGTCCGACGAGGACGATG
ATGAGGAGTTTGAAGATGTGTAGCAAACTAATGAACCAACTGGACACGAT
GCTCAAACTCCTCAAACAAATCGACTCCGTCGAAATCCCCCCAACGACTT
CGACACGGCCTGGGACCATAAAATCGACGTCGTCCGGAACCAGCAAACCC
ACCCCACACGAGCGGCAGTCATCGTGCCCTCGAAGCAACAACAAGAAGCC
GTGCGCGGCAACACCAAGACCGACGCCACCGCTCTCGAAATTTCCCTCAC
CTCTAGCGAAGAGAAATCCGCCGCCGAACAAGCCGCCGAAGCGGCGCGCA
AAGCGGCAGTCGAGAAACAGAATGCCCTGCCAGTCTGGCACACCCACTCC
ACGGTGTCCACGTCCGCGGGCAACGGGCCGCATGAGCACGCGCGCTGAAA
TTCGCGATGGCTCAACACGTCCCGTTAACCGCGAATACTACTACATCCCA
CTGCACCCCGTCGTCGACGCGATCAAATACAAAGTCTCGAAACTCACCTC
CACAATAAAAGCACAATACACACCAAGCCAAGAGCGCAAAGAATACATCT
GCCTCCGCTGCGGCTCCGAATGGACCGAACTCGACGTCCTCAGTCTCTAC
AGCGAAGAAGGCTTCGAATGCCAAAACTGCGGGGCGATCCTCGAACGCAC
CGAGGACTCTGCACGCAGAAGATCTCGCATTTCTTCTAGGCATGCAACAA
AAAGACTTACGGAAACTCTGCGCCAAGTTGCGCGAAGATCGGCTCATCTC
CGTATGGATCTCGCAAACACCCTTATTCGCAGCGTCGTGCGCGCCTTCTA
CGAGACCCGCCACATCCTCGTAGTAGATGCGCTCTTCATCCACTCCGTGT
CGCGGCTTACTATGCTGAAATGGAGCGTGAGAAGGCCCTCCAGGCGCAAG
AAGATGCAAGCAGTGCAGAGGAAGATTCGGATGAGTTTGATGAGTTCGAG
GATGTGGGTGTGTCAGCTAGTGATGCGGCTGCTTCTCCTGCTGTCAATGC
TACGCCTACGCCTGGCGGGGGCCCTACTAGTGCGCCGATGCAGCAGACTT
CGACTACGTCTTCGGTTGGTATCAAGCGGGAGTTAGATACGGATTACTCG
AGCGTCAGTACATCTCAGACGGCAGCGGCGACGCCAGCTACGGGCGGAGA
GGAAGGGCCGACGGCGAAGAAGATCAAGACTGAACCGGAGGTTAAGAAAG
AAGAAGAGTCCGACGAGGACGATGATGAGGAGTTTGAAGATGTGTAGCAA
ACTAATGAACCAACTGGACACGATGCTCAAACTCCTCAAACAAATCGACT
CCGTCGAAATCCCCCCAACGACTTCGACACGGCCTGGGACCATAAAATCG
ACGTCGTCCGGAACCAGCAAACCCACCCCACACGAGCGGCAGTCATCGTG
CCCTCGAAGCAACAACAAGAAGCCGTGCGCGGCAACACCAAGACCGACGC
CACCGCTCTCGAAATTTCCCTCACCTCTAGCGAAGAGAAATCCGCCGCCG
AACAAGCCGCCGAAGCGGCGCGCAAAGCGGCAGTCGAGAAACAGAATGCC
CTGCCAGTCTGGCACACCCACTCCACGGTGTCCACGTCCGCGGGCAACGG
GCCGCATGAGCACGCGCGCTGAAATTCGCGATGGCTCAACACGTCCCGTT
AACCGCGAATACTACTACATCCCACTGCACCCCGTCGTCGACGCGATCAA
ATACAAAGTCTCGAAACTCACCTCCACAATAAAAGCACAATACACACCAA
GCCAAGAGCGCAAAGAATACATCTGCCTCCGCTGCGGCTCCGAATGGACC
GAACTCGACGTCCTCAGTCTCTACAGCGAAGAAGGCTTCGAATGCCAAAA
CTGCGGGGCGATCCTCGAACGCACCGAGGACTCTGCACGCAGAAGATCTC
GCATTTCTTCTAGGCATGCAACAAAAAGACTTACGGAAACTCTGCGCCAA
GTTGCGCGAAGATCGGCTCATCTCCGTATGGATCTCGCAAACACCCTTAT
TCGCAGCGTCGTGCGCGCCTTCTACGAGACCCGCCACATCCTCGTAGTAG
ATGCGCTCTTCATCCACTCCGTGTCGCGGCTTACTATGCTGAAATGGAGC
GTGAGAAGGCCCTCCAGGCGCAAGAAGATGCAAGCAGTGCAGAGGAAGAT
TCGGATGAGTTTGATGAGTTCGAGGATGTGGGTGTGTCAGCTAGTGATGC
GGCTGCTTCTCCTGCTGTCAATGCTACGCCTACGCCTGGCGGGGGCCCTA
CTAGTGCGCCGATGCAGCAGACTTCGACTACGTCTTCGGTTGGTATCAAG
CGGGAGTTAGATACGGATTACTCGAGCGTCAGTACATCTCAGACGGCAGC
GGCGACGCCAGCTACGGGCGGAGAGGAAGGGCCGACGGCGAAGAAGATCA
AGACTGAACCGGAGGTTAAGAAAGAAGAAGAGTCCGACGAGGACGATGAT
GAGGAGTTTGAAGATGTGTAGCAAACTAATGAACCAACTGGACACGATGC
TCAAACTCCTCAAACAAATCGACTCCGTCGAAATCCCCCCAACGACTTCG
ACACGGCCTGGGACCATAAAATCGACGTCGTCCGGAACCAGCAAACCCAC
CCCACACGAGCGGCAGTCATCGTGCCCTCGAAGCAACAACAAGAAGCCGT
GCGCGGCAACACCAAGACCGACGCCACCGCTCTCGAAATTTCCCTCACCT
CTAGCGAAGAGAAATCCGCCGCCGAACAAGCCGCCGAAGCGGCGCGCAAA
GCGGCAGTCGAGAAACAGAATGCCCTGCCAGTCTGGCACACCCACTCCAC
GGTGTCCACGTCCGCGGGCAACGGGCCGCATGAGCACGCGCGCTGAAATT
CGCGATGGCTCAACACGTCCCGTTAACCGCGAATACTACTACATCCCACT
GCACCCCGTCGTCGACGCGATCAAATACAAAGTCTCGAAACTCACCTCCA
CAATAAAAGCACAATACACACCAAGCCAAGAGCGCAAAGAATACATCTGC
CTCCGCTGCGGCTCCGAATGGACCGAACTCGACGTCCTCAGTCTCTACAG
CGAAGAAGGCTTCGAATGCCAAAACTGCGGGGCGATCCTCGAACGCACCG
AGGACTCTGCACGCAGAAGATCTCGCATTTCTTCTAGGCATGCAACAAAA
AGACTTACGGAAACTCTGCGCCAAGTTGCGCGAAGATCGGCTCATCTCCG
TATGGATCTCGCAAACACCCTTATTCGCAGCGTCGTGCGCGCCTTCTACG
AGACCCGCCACATCCTCGTAGTAGATGCGCTCTTCATCCACTCCGTGTCG
CGGCTTACTATGCTGAAATGGAGCGTGAGAAGGCCCTCCAGGCGCAAGAA
GATGCAAGCAGTGCAGAGGAAGATTCGGATGAGTTTGATGAGTTCGAGGA
TGTGGGTGTGTCAGCTAGTGATGCGGCTGCTTCTCCTGCTGTCAATGCTA
CGCCTACGCCTGGCGGGGGCCCTACTAGTGCGCCGATGCAGCAGACTTCG
ACTACGTCTTCGGTTGGTATCAAGCGGGAGTTAGATACGGATTACTCGAG
CGTCAGTACATCTCAGACGGCAGCGGCGACGCCAGCTACGGGCGGAGAGG
AAGGGCCGACGGCGAAGAAGATCAAGACTGAACCGGAGGTTAAGAAAGAA
GAAGAGTCCGACGAGGACGATGATGAGGAGTTTGAAGATGTGTAGCAAAC
TAATGAACCAACTGGACACGATGCTCAAACTCCTCAAACAAATCGACTCC
GTCGAAATCCCCCCAACGACTTCGACACGGCCTGGGACCATAAAATCGAC
GTCGTCCGGAACCAGCAAACCCACCCCACACGAGCGGCAGTCATCGTGCC
CTCGAAGCAACAACAAGAAGCCGTGCGCGGCAACACCAAGACCGACGCCA
CCGCTCTCGAAATTTCCCTCACCTCTAGCGAAGAGAAATCCGCCGCCGAA
CAAGCCGCCGAAGCGGCGCGCAAAGCGGCAGTCGAGAAACAGAATGCCCT
GCCAGTCTGGCACACCCACTCCACGGTGTCCACGTCCGCGGGCAACGGGC
CGCATGAGCACGCGCGCTGAAATTCGCGATGGCTCAACACGTCCCGTTAA
CCGCGAATACTACTACATCCCACTGCACCCCGTCGTCGACGCGATCAAAT
ACAAAGTCTCGAAACTCACCTCCACAATAAAAGCACAATACACACCAAGC
CAAGAGCGCAAAGAATACATCTGCCTCCGCTGCGGCTCCGAATGGACCGA
ACTCGACGTCCTCAGTCTCTACAGCGAAGAAGGCTTCGAATGCCAAAACT
GCGGGGCGATCCTCGAACGCACCGAGGACTCTGCACGCAGAAGATCTCGC
ATTTCTTCTAGGCATGCAACAAAAAGACTTACGGAAACTCTGCGCCAAGT
TGCGCGAAGATCGGCTCATCTCCGTATGGATCTCGCAAACACCCTTATTC
GCAGCGTCGTGCGCGCCTTCTACGAGACCCGCCACATCCTCGTAGTAGAT
GCGCTCTTCATCCACTCCGT back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006367 | transcription initiation from RNA polymerase II promoter |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
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| DBxref | InterPro:IPR017919 |
| DBxref | InterPro:IPR024550 |
| DBxref | InterPro:IPR002853 |
| DBxref | PFAM:PF02002 |
| Product | TFIIE alpha subunit family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
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| NKJJ01000007.1 | supercontig | NKJJ01000007.1:354087..355588 - |
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