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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000007.1:356035..358101+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_33355-T1 ID=CAN33_33355-T1|Name=CAN33_33355-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=2067bp|location=Sequence derived from alignment at NKJJ01000007.1:356035..358101+ (Aspergillus niger FDAARGOS_311)
ATGCCGCTCCACATTTTCCTGCGACGCTCTTTGGCCCCCCATCTGTCAGT
TTCTGGCGCGCGCACTTCTCTGCGTACCCCCCAAGCGCGGTTCTATTCTC
CCGAGTACCTACGCTCGCTAAAGGCCCGTCGCATCCCATGGACAATAACG
AAGGAAGACCTCCGCAAGCCGGAGGCGGAGCTGATCGAGGTCGTAAGAAG
CGGAATATGGGACGATCCGAGTGGAGGTATGTTGTGCATGCCCCCGATCC
GGGATGTTTGGGTTGAGCAATTGATTGTCTGACTTCCAGCTAACCCAGAA
AGTCGGAATATGGTAGATAAGAGAGCCCGGCACGATGCTCAGCAGGAAGC
GAAACGTCGCAAGATCGAGAACGGAGAGGAGGTTAGGGCTCCTGTATATG
CGACGCAATTCTCCAAGGAGGACATCGAGAGTGAGCAGCGCCGCCCCAAG
AAGAAGGTCGCCGTGCTGCTGGGATATTCGGGAACTGGATACAAGGGCAT
GCAATTGTATGATTACGGTCCTTTGCGGTTTATTTTAAAAAATATCGGAG
CTGTTACTAATTGTAGGTAGGAGCGAGACGGAAAAGACCATCGAAGGAGA
GCTCTTTGCGGCTTTCGTGGCGGCTGGCGCCATCTCCAAGGCCAACGCAA
CCGACCCGAAGAAGTCATCGCTGGTGCGGTGCGCGCGTACCGACAAGGGT
GTCCACGCTGCGGGAAACATTGTCTCCCTGAAGCTGATTGTCGAAGATGA
CGATATCATTCAGAAGATCAACGAGAAACTCAGCTCGCAGATTCGCGTAT
GGGACATCCTCGTCACGAACAAGTCGTTCAGCAGTTATCAGCTGTGCGAC
TCTCGCATTTACGAATACCTCATTCCAACTCACTGTTTCCTGCCGCCTCA
CCCCAGCACTTACCTGGGCAAGAAGCTCTTCGAGTACGCCGAGAAGGAGG
GTGACCTGGAGGGTTACAAGGCGCGACAGGAAGAGGTGGCGAGCTACTGG
GAGGAGACCGACGAGAAGTACGTCCGTCCGATCCTCGACAACACGCCCGA
GGATATCCGCAAGCTCGTCGAGAAGGTCCTCCACCTGAACGATGAGGACC
AGTCCGCGCAAGACGACATGTTCCAGACACAAGACAAGCCTGCATCAGAG
GAAACCACCGAACAGCCATCCTCCGAAGGAAAGCCCGCAGATGCTGAAAA
AGACGAGGCCGAAGAAGCGCGCCGACGTAAGATCTTCGAGACCGTCAAAG
CCATCAAAGCCGCCTATCTCCAGGCTAAGAGGGCCTACCGTATTCCGGCC
CAACGCCTGGCCCGCGTGCAGGAAGCCCTCGACAAGTACGTCGGAACGAA
TAACTTCTTCAACTACACAATCCAAAAGACACATGCCGACCCATCCTCAA
AACGTCACATCAAGTCCTTCAAGATGGCCGAACAACCCATCATCATCAAC
GGCACCGAGTGGCTCAGCCTCAAGGTCCATGGCCAAAGTTTCATGATGCA
CCAGATCCGCAAGATGGTCGCCATGGCTGCCATGGTCGTGCGCTGCGGCT
GTGATCCCCAGCGGATTGTCGAGACTTACGGCGCCAATAAGATCGCCATT
CCCAAGGCTCCCGGTCTGGGTCTGCTTCTTGAACGGCCCGTCTTCGACTC
GTATAACCGGAAGACCCATGAGACGGGCAAAGACCCCATCGACTTCGACA
AGCATGCCGATACCATTAATGAGTTCAAGCAGCGTGAGATTTACGATCGT
ATCTTCCGTGAGGAAGAAGAAACTCATGCGTATGTTTATCACTCCCCTGT
TTTCGTTCGTCCTTGGAGTTATTGATTCAGAACTAATGATAATATCTTTC
GTTTAGTTTCTCTGCTTTCTTTGGCCACCTCGATCACTACTCGCAAGAGG
AATTCCTCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGACTAGTCTCG
GTGCCTGCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGAGGCGTTGGC
AGAGGTGGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTCCGAATGGGG
GAGAAGAGGGAGGTTAG back to topCoding sequence (CDS) from alignment at NKJJ01000007.1:356035..358101+ >CAN33_33355-T1 ID=CAN33_33355-T1|Name=CAN33_33355-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=7452bp|location=Sequence derived from alignment at NKJJ01000007.1:356035..358101+ (Aspergillus niger FDAARGOS_311)
ATGCCGCTCCACATTTTCCTGCGACGCTCTTTGGCCCCCCATCTGTCAGT
TTCTGGCGCGCGCACTTCTCTGCGTACCCCCCAAGCGCGGTTCTATTCTC
CCGAGTACCTACGCTCGCTAAAGGCCCGTCGCATCCCATGGACAATAACG
AAGGAAGACCTCCGCAAGCCGGAGGCGGAGCTGATCGAGGTCGTAAGAAG
CGGAATATGGGACGATCCGAGTGGAGCTAACCCAGAAAGTCGGAATATGG
TAGATAAGAGAGCCCGGCACGATGCTCAGCAGGAAGCGAAACGTCGCAAG
ATCGAGAACGGAGAGGAGGTTAGGGCTCCTGTATATGCGACGCAATTCTC
CAAGGAGGACATCGAGAGTGAGCAGCGCCGCCCCAAGAAGAAGGTCGCCG
TGCTGCTGGGATATTCGGGAACTGGATACAAGGGCATGCAATTGAGCGAG
ACGGAAAAGACCATCGAAGGAGAGCTCTTTGCGGCTTTCGTGGCGGCTGG
CGCCATCTCCAAGGCCAACGCAACCGACCCGAAGAAGTCATCGCTGGTGC
GGTGCGCGCGTACCGACAAGGGTGTCCACGCTGCGGGAAACATTGTCTCC
CTGAAGCTGATTGTCGAAGATGACGATATCATTCAGAAGATCAACGAGAA
ACTCAGCTCGCAGATTCGCGTATGGGACATCCTCGTCACGAACAAGTCGT
TCAGCAGTTATCAGCTGTGCGACTCTCGCATTTACGAATACCTCATTCCA
ACTCACTGTTTCCTGCCGCCTCACCCCAGCACTTACCTGGGCAAGAAGCT
CTTCGAGTACGCCGAGAAGGAGGGTGACCTGGAGGGTTACAAGGCGCGAC
AGGAAGAGGTGGCGAGCTACTGGGAGGAGACCGACGAGAAGTACGTCCGT
CCGATCCTCGACAACACGCCCGAGGATATCCGCAAGCTCGTCGAGAAGGT
CCTCCACCTGAACGATGAGGACCAGTCCGCGCAAGACGACATGTTCCAGA
CACAAGACAAGCCTGCATCAGAGGAAACCACCGAACAGCCATCCTCCGAA
GGAAAGCCCGCAGATGCTGAAAAAGACGAGGCCGAAGAAGCGCGCCGACG
TAAGATCTTCGAGACCGTCAAAGCCATCAAAGCCGCCTATCTCCAGGCTA
AGAGGGCCTACCGTATTCCGGCCCAACGCCTGGCCCGCGTGCAGGAAGCC
CTCGACAAGTACGTCGGAACGAATAACTTCTTCAACTACACAATCCAAAA
GACACATGCCGACCCATCCTCAAAACGTCACATCAAGTCCTTCAAGATGG
CCGAACAACCCATCATCATCAACGGCACCGAGTGGCTCAGCCTCAAGGTC
CATGGCCAAAGTTTCATGATGCACCAGATCCGCAAGATGGTCGCCATGGC
TGCCATGGTCGTGCGCTGCGGCTGTGATCCCCAGCGGATTGTCGAGACTT
ACGGCGCCAATAAGATCGCCATTCCCAAGGCTCCCGGTCTGGGTCTGCTT
CTTGAACGGCCCGTCTTCGACTCGTATAACCGGAAGACCCATGAGACGGG
CAAAGACCCCATCGACTTCGACAAGCATGCCGATACCATTAATGAGTTCA
AGCAGCGTGAGATTTACGATCGTATCTTCCGTGAGGAAGAAGAAACTCAT
GCTTTCTCTGCTTTCTTTGGCCACCTCGATCACTACTCGCAAGAGGAATT
CCTCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGACTAGTCTCGGTGC
CTGCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGAGGCGTTGGCAGAG
GTGGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTCCGAATGGGGGAGA
AGAGGGAGGTTAGATGCCGCTCCACATTTTCCTGCGACGCTCTTTGGCCC
CCCATCTGTCAGTTTCTGGCGCGCGCACTTCTCTGCGTACCCCCCAAGCG
CGGTTCTATTCTCCCGAGTACCTACGCTCGCTAAAGGCCCGTCGCATCCC
ATGGACAATAACGAAGGAAGACCTCCGCAAGCCGGAGGCGGAGCTGATCG
AGGTCGTAAGAAGCGGAATATGGGACGATCCGAGTGGAGCTAACCCAGAA
AGTCGGAATATGGTAGATAAGAGAGCCCGGCACGATGCTCAGCAGGAAGC
GAAACGTCGCAAGATCGAGAACGGAGAGGAGGTTAGGGCTCCTGTATATG
CGACGCAATTCTCCAAGGAGGACATCGAGAGTGAGCAGCGCCGCCCCAAG
AAGAAGGTCGCCGTGCTGCTGGGATATTCGGGAACTGGATACAAGGGCAT
GCAATTGAGCGAGACGGAAAAGACCATCGAAGGAGAGCTCTTTGCGGCTT
TCGTGGCGGCTGGCGCCATCTCCAAGGCCAACGCAACCGACCCGAAGAAG
TCATCGCTGGTGCGGTGCGCGCGTACCGACAAGGGTGTCCACGCTGCGGG
AAACATTGTCTCCCTGAAGCTGATTGTCGAAGATGACGATATCATTCAGA
AGATCAACGAGAAACTCAGCTCGCAGATTCGCGTATGGGACATCCTCGTC
ACGAACAAGTCGTTCAGCAGTTATCAGCTGTGCGACTCTCGCATTTACGA
ATACCTCATTCCAACTCACTGTTTCCTGCCGCCTCACCCCAGCACTTACC
TGGGCAAGAAGCTCTTCGAGTACGCCGAGAAGGAGGGTGACCTGGAGGGT
TACAAGGCGCGACAGGAAGAGGTGGCGAGCTACTGGGAGGAGACCGACGA
GAAGTACGTCCGTCCGATCCTCGACAACACGCCCGAGGATATCCGCAAGC
TCGTCGAGAAGGTCCTCCACCTGAACGATGAGGACCAGTCCGCGCAAGAC
GACATGTTCCAGACACAAGACAAGCCTGCATCAGAGGAAACCACCGAACA
GCCATCCTCCGAAGGAAAGCCCGCAGATGCTGAAAAAGACGAGGCCGAAG
AAGCGCGCCGACGTAAGATCTTCGAGACCGTCAAAGCCATCAAAGCCGCC
TATCTCCAGGCTAAGAGGGCCTACCGTATTCCGGCCCAACGCCTGGCCCG
CGTGCAGGAAGCCCTCGACAAGTACGTCGGAACGAATAACTTCTTCAACT
ACACAATCCAAAAGACACATGCCGACCCATCCTCAAAACGTCACATCAAG
TCCTTCAAGATGGCCGAACAACCCATCATCATCAACGGCACCGAGTGGCT
CAGCCTCAAGGTCCATGGCCAAAGTTTCATGATGCACCAGATCCGCAAGA
TGGTCGCCATGGCTGCCATGGTCGTGCGCTGCGGCTGTGATCCCCAGCGG
ATTGTCGAGACTTACGGCGCCAATAAGATCGCCATTCCCAAGGCTCCCGG
TCTGGGTCTGCTTCTTGAACGGCCCGTCTTCGACTCGTATAACCGGAAGA
CCCATGAGACGGGCAAAGACCCCATCGACTTCGACAAGCATGCCGATACC
ATTAATGAGTTCAAGCAGCGTGAGATTTACGATCGTATCTTCCGTGAGGA
AGAAGAAACTCATGCTTTCTCTGCTTTCTTTGGCCACCTCGATCACTACT
CGCAAGAGGAATTCCTCTACGTCACGTCGGGCGGTATCCCTGCTGCCAGA
CTAGTCTCGGTGCCTGCTAACGGCACGGAGGAGAAGAAGTCGCAGCGCGA
GGCGTTGGCAGAGGTGGAGGGTGCTGCGTCGGAGGATGAGGGTGCTCCTC
CGAATGGGGGAGAAGAGGGAGGTTAGATGCCGCTCCACATTTTCCTGCGA
CGCTCTTTGGCCCCCCATCTGTCAGTTTCTGGCGCGCGCACTTCTCTGCG
TACCCCCCAAGCGCGGTTCTATTCTCCCGAGTACCTACGCTCGCTAAAGG
CCCGTCGCATCCCATGGACAATAACGAAGGAAGACCTCCGCAAGCCGGAG
GCGGAGCTGATCGAGGTCGTAAGAAGCGGAATATGGGACGATCCGAGTGG
AGCTAACCCAGAAAGTCGGAATATGGTAGATAAGAGAGCCCGGCACGATG
CTCAGCAGGAAGCGAAACGTCGCAAGATCGAGAACGGAGAGGAGGTTAGG
GCTCCTGTATATGCGACGCAATTCTCCAAGGAGGACATCGAGAGTGAGCA
GCGCCGCCCCAAGAAGAAGGTCGCCGTGCTGCTGGGATATTCGGGAACTG
GATACAAGGGCATGCAATTGAGCGAGACGGAAAAGACCATCGAAGGAGAG
CTCTTTGCGGCTTTCGTGGCGGCTGGCGCCATCTCCAAGGCCAACGCAAC
CGACCCGAAGAAGTCATCGCTGGTGCGGTGCGCGCGTACCGACAAGGGTG
TCCACGCTGCGGGAAACATTGTCTCCCTGAAGCTGATTGTCGAAGATGAC
GATATCATTCAGAAGATCAACGAGAAACTCAGCTCGCAGATTCGCGTATG
GGACATCCTCGTCACGAACAAGTCGTTCAGCAGTTATCAGCTGTGCGACT
CTCGCATTTACGAATACCTCATTCCAACTCACTGTTTCCTGCCGCCTCAC
CCCAGCACTTACCTGGGCAAGAAGCTCTTCGAGTACGCCGAGAAGGAGGG
TGACCTGGAGGGTTACAAGGCGCGACAGGAAGAGGTGGCGAGCTACTGGG
AGGAGACCGACGAGAAGTACGTCCGTCCGATCCTCGACAACACGCCCGAG
GATATCCGCAAGCTCGTCGAGAAGGTCCTCCACCTGAACGATGAGGACCA
GTCCGCGCAAGACGACATGTTCCAGACACAAGACAAGCCTGCATCAGAGG
AAACCACCGAACAGCCATCCTCCGAAGGAAAGCCCGCAGATGCTGAAAAA
GACGAGGCCGAAGAAGCGCGCCGACGTAAGATCTTCGAGACCGTCAAAGC
CATCAAAGCCGCCTATCTCCAGGCTAAGAGGGCCTACCGTATTCCGGCCC
AACGCCTGGCCCGCGTGCAGGAAGCCCTCGACAAGTACGTCGGAACGAAT
AACTTCTTCAACTACACAATCCAAAAGACACATGCCGACCCATCCTCAAA
ACGTCACATCAAGTCCTTCAAGATGGCCGAACAACCCATCATCATCAACG
GCACCGAGTGGCTCAGCCTCAAGGTCCATGGCCAAAGTTTCATGATGCAC
CAGATCCGCAAGATGGTCGCCATGGCTGCCATGGTCGTGCGCTGCGGCTG
TGATCCCCAGCGGATTGTCGAGACTTACGGCGCCAATAAGATCGCCATTC
CCAAGGCTCCCGGTCTGGGTCTGCTTCTTGAACGGCCCGTCTTCGACTCG
TATAACCGGAAGACCCATGAGACGGGCAAAGACCCCATCGACTTCGACAA
GCATGCCGATACCATTAATGAGTTCAAGCAGCGTGAGATTTACGATCGTA
TCTTCCGTGAGGAAGAAGAAACTCATGCTTTCTCTGCTTTCTTTGGCCAC
CTCGATCACTACTCGCAAGAGGAATTCCTCTACGTCACGTCGGGCGGTAT
CCCTGCTGCCAGACTAGTCTCGGTGCCTGCTAACGGCACGGAGGAGAAGA
AGTCGCAGCGCGAGGCGTTGGCAGAGGTGGAGGGTGCTGCGTCGGAGGAT
GAGGGTGCTCCTCCGAATGGGGGAGAAGAGGGAGGTTAGATGCCGCTCCA
CATTTTCCTGCGACGCTCTTTGGCCCCCCATCTGTCAGTTTCTGGCGCGC
GCACTTCTCTGCGTACCCCCCAAGCGCGGTTCTATTCTCCCGAGTACCTA
CGCTCGCTAAAGGCCCGTCGCATCCCATGGACAATAACGAAGGAAGACCT
CCGCAAGCCGGAGGCGGAGCTGATCGAGGTCGTAAGAAGCGGAATATGGG
ACGATCCGAGTGGAGCTAACCCAGAAAGTCGGAATATGGTAGATAAGAGA
GCCCGGCACGATGCTCAGCAGGAAGCGAAACGTCGCAAGATCGAGAACGG
AGAGGAGGTTAGGGCTCCTGTATATGCGACGCAATTCTCCAAGGAGGACA
TCGAGAGTGAGCAGCGCCGCCCCAAGAAGAAGGTCGCCGTGCTGCTGGGA
TATTCGGGAACTGGATACAAGGGCATGCAATTGAGCGAGACGGAAAAGAC
CATCGAAGGAGAGCTCTTTGCGGCTTTCGTGGCGGCTGGCGCCATCTCCA
AGGCCAACGCAACCGACCCGAAGAAGTCATCGCTGGTGCGGTGCGCGCGT
ACCGACAAGGGTGTCCACGCTGCGGGAAACATTGTCTCCCTGAAGCTGAT
TGTCGAAGATGACGATATCATTCAGAAGATCAACGAGAAACTCAGCTCGC
AGATTCGCGTATGGGACATCCTCGTCACGAACAAGTCGTTCAGCAGTTAT
CAGCTGTGCGACTCTCGCATTTACGAATACCTCATTCCAACTCACTGTTT
CCTGCCGCCTCACCCCAGCACTTACCTGGGCAAGAAGCTCTTCGAGTACG
CCGAGAAGGAGGGTGACCTGGAGGGTTACAAGGCGCGACAGGAAGAGGTG
GCGAGCTACTGGGAGGAGACCGACGAGAAGTACGTCCGTCCGATCCTCGA
CAACACGCCCGAGGATATCCGCAAGCTCGTCGAGAAGGTCCTCCACCTGA
ACGATGAGGACCAGTCCGCGCAAGACGACATGTTCCAGACACAAGACAAG
CCTGCATCAGAGGAAACCACCGAACAGCCATCCTCCGAAGGAAAGCCCGC
AGATGCTGAAAAAGACGAGGCCGAAGAAGCGCGCCGACGTAAGATCTTCG
AGACCGTCAAAGCCATCAAAGCCGCCTATCTCCAGGCTAAGAGGGCCTAC
CGTATTCCGGCCCAACGCCTGGCCCGCGTGCAGGAAGCCCTCGACAAGTA
CGTCGGAACGAATAACTTCTTCAACTACACAATCCAAAAGACACATGCCG
ACCCATCCTCAAAACGTCACATCAAGTCCTTCAAGATGGCCGAACAACCC
ATCATCATCAACGGCACCGAGTGGCTCAGCCTCAAGGTCCATGGCCAAAG
TTTCATGATGCACCAGATCCGCAAGATGGTCGCCATGGCTGCCATGGTCG
TGCGCTGCGGCTGTGATCCCCAGCGGATTGTCGAGACTTACGGCGCCAAT
AAGATCGCCATTCCCAAGGCTCCCGGTCTGGGTCTGCTTCTTGAACGGCC
CGTCTTCGACTCGTATAACCGGAAGACCCATGAGACGGGCAAAGACCCCA
TCGACTTCGACAAGCATGCCGATACCATTAATGAGTTCAAGCAGCGTGAG
ATTTACGATCGTATCTTCCGTGAGGAAGAAGAAACTCATGCTTTCTCTGC
TTTCTTTGGCCACCTCGATCACTACTCGCAAGAGGAATTCCTCTACGTCA
CGTCGGGCGGTATCCCTGCTGCCAGACTAGTCTCGGTGCCTGCTAACGGC
ACGGAGGAGAAGAAGTCGCAGCGCGAGGCGTTGGCAGAGGTGGAGGGTGC
TGCGTCGGAGGATGAGGGTGCTCCTCCGAATGGGGGAGAAGAGGGAGGTT
AG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0031119 | tRNA pseudouridine synthesis |
| GO:0009451 | RNA modification |
| GO:0001522 | pseudouridine synthesis |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003723 | RNA binding |
| GO:0009982 | pseudouridine synthase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR020103 |
| DBxref | InterPro:IPR041708 |
| DBxref | InterPro:IPR001406 |
| DBxref | InterPro:IPR020095 |
| DBxref | InterPro:IPR020097 |
| DBxref | PFAM:PF01416 |
| Product | tRNA pseudouridine(38-40) synthase |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000007.1 | supercontig | NKJJ01000007.1:356035..358101 + |
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