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CAN33_35270-T1, CAN33_35270-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_35270-T1
Unique NameCAN33_35270-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000007.1:1477741..1478664+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_35270-T1 ID=CAN33_35270-T1|Name=CAN33_35270-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=924bp|location=Sequence derived from alignment at NKJJ01000007.1:1477741..1478664+ (Aspergillus niger FDAARGOS_311)
ATGGCCGACATCACTGCCGTCGGTGAGGAGAACCCTTCTCCTACTCAGGA
CGACCTGCAGCAGGCCGCCGGTAACGGCGCCGCTGACAACCGCGGCACCA
AGCGCTCTCGCATGAGCGCCGACGACGACGACGATGATGATGACAAGCCC
GGTCGCGAGCGCAGAAAGATTGAGATCAAATTCATTCAGGATAAGTCGCG
TCGCCACATCACCTTCTCCAAGCGGAAGGCGGGTATCATGAAGAAGGTGC
GTGCTGTCGCGTCTCTGCAGCCTCATCTCTCCCCTTCGTTATCGCCGTCA
ATTCTGTCGCCAACTCTAGTCTTTTCATGATGCGTCTTTTCTCGTCGTTG
TCAAGCTTGTTTTGCACGTTGTCTGCCTGGAACTATTGCCGTTGGATCGG
TGCTGACGCCTCAATGCGGTCGCAAAACAGGCCTACGAACTCTCCGTTCT
CACAGGTACCCAAGTACTCCTCCTGGTGGTGTCCGAGACCGGTCTCGTCT
ATACTTTCACCACCCCGAAGCTTCAACCGCTGGTGACCAAGGCTGAGGGC
AAGAACCTCATTCAGGTGAGTGCTGTGCCACTGCTTCCTCTCGTCTACGC
GAGTCGAACTCAACGCGACTGACTCCCTCCGTTTCCCATGTACAGGCCTG
CCTGAATGCACCTGATCCCACTACCAATGAGAATGGCGTTGATGCGCCCG
AGGTGCCGGCTGAGACGCCAGAGGATGTCAGCCACAGCAATGTCAACCCT
CAACAGTCGAATATCCCCCGTCCCGCCGGTATGCACCCCGGCTACATGAC
GAACGAACAACAGCAGCAGATGGCCTACTACCAGGGCCTTCAGCAGCAAC
AGCAGGCAGGAGGACAGTATCCTGGCATGCCTGTGGGTAACCGGATGCCA
CCTCAGCACCAGCCCACGGCGTAA
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Coding sequence (CDS) from alignment at NKJJ01000007.1:1477741..1478664+

>CAN33_35270-T1 ID=CAN33_35270-T1|Name=CAN33_35270-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2124bp|location=Sequence derived from alignment at NKJJ01000007.1:1477741..1478664+ (Aspergillus niger FDAARGOS_311)
ATGGCCGACATCACTGCCCCCGGTCGCGAGCGCAGAAAGATTGAGATCAA
ATTCATTCAGGATAAGTCGCGTCGCCACATCACCTTCTCCAAGCGGAAGG
CGGGTATCATGAAGAAGGCCTACGAACTCTCCGTTCTCACAGGTACCCAA
GTACTCCTCCTGGTGGTGTCCGAGACCGGTCTCGTCTATACTTTCACCAC
CCCGAAGCTTCAACCGCTGGTGACCAAGGCTGAGGGCAAGAACCTCATTC
AGGCCTGCCTGAATGCACCTGATCCCACTACCAATGAGAATGGCGTTGAT
GCGCCCGAGGTGCCGGCTGAGACGCCAGAGGATGTCAGCCACAGCAATGT
CAACCCTCAACAGTCGAATATCCCCCGTCCCGCCGGTATGCACCCCGGCT
ACATGACGAACGAACAACAGCAGCAGATGGCCTACTACCAGGGCCTTCAG
CAGCAACAGCAGGCAGGAGGACAGTATCCTGGCATGCCTGTGGGTAACCG
GATGCCACCTCAGCACCAGCCCACGGCGTAAATGGCCGACATCACTGCCC
CCGGTCGCGAGCGCAGAAAGATTGAGATCAAATTCATTCAGGATAAGTCG
CGTCGCCACATCACCTTCTCCAAGCGGAAGGCGGGTATCATGAAGAAGGC
CTACGAACTCTCCGTTCTCACAGGTACCCAAGTACTCCTCCTGGTGGTGT
CCGAGACCGGTCTCGTCTATACTTTCACCACCCCGAAGCTTCAACCGCTG
GTGACCAAGGCTGAGGGCAAGAACCTCATTCAGGCCTGCCTGAATGCACC
TGATCCCACTACCAATGAGAATGGCGTTGATGCGCCCGAGGTGCCGGCTG
AGACGCCAGAGGATGTCAGCCACAGCAATGTCAACCCTCAACAGTCGAAT
ATCCCCCGTCCCGCCGGTATGCACCCCGGCTACATGACGAACGAACAACA
GCAGCAGATGGCCTACTACCAGGGCCTTCAGCAGCAACAGCAGGCAGGAG
GACAGTATCCTGGCATGCCTGTGGGTAACCGGATGCCACCTCAGCACCAG
CCCACGGCGTAAATGGCCGACATCACTGCCCCCGGTCGCGAGCGCAGAAA
GATTGAGATCAAATTCATTCAGGATAAGTCGCGTCGCCACATCACCTTCT
CCAAGCGGAAGGCGGGTATCATGAAGAAGGCCTACGAACTCTCCGTTCTC
ACAGGTACCCAAGTACTCCTCCTGGTGGTGTCCGAGACCGGTCTCGTCTA
TACTTTCACCACCCCGAAGCTTCAACCGCTGGTGACCAAGGCTGAGGGCA
AGAACCTCATTCAGGCCTGCCTGAATGCACCTGATCCCACTACCAATGAG
AATGGCGTTGATGCGCCCGAGGTGCCGGCTGAGACGCCAGAGGATGTCAG
CCACAGCAATGTCAACCCTCAACAGTCGAATATCCCCCGTCCCGCCGGTA
TGCACCCCGGCTACATGACGAACGAACAACAGCAGCAGATGGCCTACTAC
CAGGGCCTTCAGCAGCAACAGCAGGCAGGAGGACAGTATCCTGGCATGCC
TGTGGGTAACCGGATGCCACCTCAGCACCAGCCCACGGCGTAAATGGCCG
ACATCACTGCCCCCGGTCGCGAGCGCAGAAAGATTGAGATCAAATTCATT
CAGGATAAGTCGCGTCGCCACATCACCTTCTCCAAGCGGAAGGCGGGTAT
CATGAAGAAGGCCTACGAACTCTCCGTTCTCACAGGTACCCAAGTACTCC
TCCTGGTGGTGTCCGAGACCGGTCTCGTCTATACTTTCACCACCCCGAAG
CTTCAACCGCTGGTGACCAAGGCTGAGGGCAAGAACCTCATTCAGGCCTG
CCTGAATGCACCTGATCCCACTACCAATGAGAATGGCGTTGATGCGCCCG
AGGTGCCGGCTGAGACGCCAGAGGATGTCAGCCACAGCAATGTCAACCCT
CAACAGTCGAATATCCCCCGTCCCGCCGGTATGCACCCCGGCTACATGAC
GAACGAACAACAGCAGCAGATGGCCTACTACCAGGGCCTTCAGCAGCAAC
AGCAGGCAGGAGGACAGTATCCTGGCATGCCTGTGGGTAACCGGATGCCA
CCTCAGCACCAGCCCACGGCGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0045944positive regulation of transcription by RNA polymerase II
Vocabulary: Molecular Function
TermDefinition
GO:0000981DNA-binding transcription factor activity, RNA polymerase II-specific
GO:0000987cis-regulatory region sequence-specific DNA binding
GO:0003677DNA binding
GO:0046983protein dimerization activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MCM1CAN33_35270Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_35270-T1.exon1CAN33_35270-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_35270-T1.exon2CAN33_35270-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_35270-T1.exon3CAN33_35270-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_35270-T1.exon4CAN33_35270-T1.exon4Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_35270-T1.cdsCAN33_35270-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_35270-T1CAN33_35270-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR033897
DBxrefInterPro:IPR036879
DBxrefInterPro:IPR002100
DBxrefPFAM:PF00319
Producttranscription factor of the MADS box
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000007.1supercontigNKJJ01000007.1:1477741..1478664 +
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