You are here

Home

CAN33_3545-T1, CAN33_3545-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_3545-T1
Unique NameCAN33_3545-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000004.1:2269915..2271833+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_3545-T1 ID=CAN33_3545-T1|Name=CAN33_3545-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1919bp|location=Sequence derived from alignment at NKJJ01000004.1:2269915..2271833+ (Aspergillus niger FDAARGOS_311)
ATGAGATCCACGACCAGTCGCAAGGGACAGACGTCCATCACTCATCTGAT
GAACTTCTCCCTTCCCCCTCGTCCTCAGTACCATCCTCCACCCCGTAATA
CTCGCCGCTATACGTCCTGGGGTCCAGGTTCCGGCTACCATGCCATGGAC
AAATCCCGCTACGTTCATGCCAACTATCGCTTTATTGTGACGCCAAATCG
CAACTACCATGCACAAGCGGCCAATGCTGATGTCCATCTTGACTGGGATT
CAGTGATGCAGGTCTTGGTATCAGAGCAGACACAGTCAGCTAGCTGCCCC
ATCTGTTTGTCCACACCGGTAGCGCCACGCATGGCTCGTTGTGGTCATAT
ATTCTGCCTTCCTTGTTTGATTCGCTACATGCATTCGACTGACGAGGAAA
AACCGGTTCCTGAGAAGAAGCCACGATGGAAAAAGTGCCCCATCTGTTGG
GACTCTGTGTACATTTCGGAAACTCGGCCTGTGCGATGGTTTCGTGGCCA
AGAAGGGGACCTCCCATTCGAGGGGGGTGATATCGTGCTAAGGCTAGTGA
AAAGAGAGCCCGGAAGCACGTTAGCACTCCCACGGGATGGAGCTGAGGGA
ATAGCACCAGATGAGGATGTTCCGTGGTATCATGCTGCAGAAGTGGCTGA
TTACGCGCGCATAATGAAAGGAGGTGAAGATTATATGAAAGAACAATACG
ACATTGAGATTGATGAGCTCCGCAGGCAGGAGCTTGAGGATGAGCTTTTA
TTTGGAGATGATACTACTTGGACACGGAAGGCGGTTGCAGCAATTGCAGA
TGCCAAATCCAAGGTAGAGGGTATAGGGAACCCACCCGAGATTGTGCGAC
TGCCCGTCCCAAGCCAAGAGCCAAAGGAACCTGTCGCCGCACACTCACCA
CCAGAGGAAATTGCTGCCATGTATGCATCGCAGCATGCAATCAAGTCAGG
CCAAAGTTCGTCTGCGGAGTCTATCCCCGCGTCAGATACTGGGCCTGGTT
CGGCCTCCACTCCGGAGACGTCCAATGATGTGGATCGTACAGCCGAAGCT
TTGGGCCAGGTTGACCTGAATACAACCTCTGCCCCGAAAAAGAAAAAGAG
AGATCCTGGACACGGCCGAAATAATATGCCCTCAAAGCGAGGTCCTACTA
CATCTGACCATGCGTTCTTCTTCTACCAAGCTCTACCCCAATTCTACCTT
TCGCCCTTGGACATCCGCATCTTGAAAGCTGCATTTGGCGATTACTCTTC
ATTCCCGGCCACCATTCTCCCTAGGGTTGAGCGTATTTCGAGCGGTCATA
TTGTGGACGACGAGCTACGCAAACGAGTCAAGTATCTCAGCCACCTGCCG
CAAGGTTGTGAGGTGAACTTTCTCGAGTGTGACTGGAGAGACGTAGTTGT
GCCGGAGGTGCTAGAAAATTTCAAGTCGGAAACTGAAAAGAGACGGAAGC
GCAATAAGGAGAAAGAGGTGCGAGAAGAGAAGGATCGCATCCGAGCGGAG
AAAGAAGAGGATGAAAAGCGCTGGGCAGCGGCGCGCCGGAAGAGGCCTAG
CATTGGCCCCGTCGATGAACCTCCCTTCTCCGACCGCGATTTTCAGCCGT
TATCGGGCTCTGCTGGCGAGCCTTCTGGCTTCGATATAGGCTCTTCCTCT
GCATCCCCTCCGCCCTCCTCGAGTCCCCCGGATCTCGTACGGTGTGGGGA
ACAGTTGCCGCTCCGACACTTTCGGCTCCGTCGAGCTCACAAGCCCCTGC
CGATGGTTGGCTGCAGGGCTGGGAGGAGGAGCTGTGGGCCCAGCAAGAAA
GGGAGCTCTTGGCTCAATCTGCTGCTGAGGCGAACACTCCAGCTTCTTCC
TCTGGCGGGAAAAAGAAGAAGAATAAGAAAATTACACTCATGTCGACCAA
TATCCAAAGAGGGGCATAG
back to top

Coding sequence (CDS) from alignment at NKJJ01000004.1:2269915..2271833+

>CAN33_3545-T1 ID=CAN33_3545-T1|Name=CAN33_3545-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3678bp|location=Sequence derived from alignment at NKJJ01000004.1:2269915..2271833+ (Aspergillus niger FDAARGOS_311)
ATGAGATCCACGACCAGTCGCAAGGGACAGACGTCCATCACTCATCTGAT
GAACTTCTCCCTTCCCCCTCGTCCTCAGTACCATCCTCCACCCCGTAATA
CTCGCCGCTATACGTCCTGGGGTCCAGGTTCCGGCTACCATGCCATGGAC
AAATCCCGCTACGTTCATGCCAACTATCGCTTTATTGTGACGCCAAATCG
CAACTACCATGCACAAGCGGCCAATGCTGATGTCCATCTTGACTGGGATT
CAGTGATGCAGGTCTTGGTATCAGAGCAGACACAGTCAGCTAGCTGCCCC
ATCTGTTTGTCCACACCGGTAGCGCCACGCATGGCTCGTTGTGGTCATAT
ATTCTGCCTTCCTTGTTTGATTCGCTACATGCATTCGACTGACGAGGAAA
AACCGGTTCCTGAGAAGAAGCCACGATGGAAAAAGTGCCCCATCTGTTGG
GACTCTGTGTACATTTCGGAAACTCGGCCTGTGCGATGGTTTCGTGGCCA
AGAAGGGGACCTCCCATTCGAGGGGGGTGATATCGTGCTAAGGCTAGTGA
AAAGAGAGCCCGGAAGCACGTTAGCACTCCCACGGGATGGAGCTGAGGGA
ATAGCACCAGATGAGGATGTTCCGTGGTATCATGCTGCAGAAGTGGCTGA
TTACGCGCGCATAATGAAAGGAGGTGAAGATTATATGAAAGAACAATACG
ACATTGAGATTGATGAGCTCCGCAGGCAGGAGCTTGAGGATGAGCTTTTA
TTTGGAGATGATACTACTTGGACACGGAAGGCGGTTGCAGCAATTGCAGA
TGCCAAATCCAAGGTAGAGGGTATAGGGAACCCACCCGAGATTGTGCGAC
TGCCCGTCCCAAGCCAAGAGCCAAAGGAACCTGTCGCCGCACACTCACCA
CCAGAGGAAATTGCTGCCATGTATGCATCGCAGCATGCAATCAAGTCAGG
CCAAAGTTCGTCTGCGGAGTCTATCCCCGCGTCAGATACTGGGCCTGGTT
CGGCCTCCACTCCGGAGACGTCCAATGATGTGGATCGTACAGCCGAAGCT
TTGGGCCAGGTTGACCTGAATACAACCTCTGCCCCGAAAAAGAAAAAGAG
AGATCCTGGACACGGCCGAAATAATATGCCCTCAAAGCGAGGTCCTACTA
CATCTGACCATGCGTTCTTCTTCTACCAAGCTCTACCCCAATTCTACCTT
TCGCCCTTGGACATCCGCATCTTGAAAGCTGCATTTGGCGATTACTCTTC
ATTCCCGGCCACCATTCTCCCTAGGGTTGAGCGTATTTCGAGCGGTCATA
TTGTGGACGACGAGCTACGCAAACGAGTCAAGTATCTCAGCCACCTGCCG
CAAGGTTGTGAGGTGAACTTTCTCGAGTGTGACTGGAGAGACGTAGTTGT
GCCGGAGGTGCTAGAAAATTTCAAGTCGGAAACTGAAAAGAGACGGAAGC
GCAATAAGGAGAAAGAGGTGCGAGAAGAGAAGGATCGCATCCGAGCGGAG
AAAGAAGAGGATGAAAAGCGCTGGGCAGCGGCGCGCCGGAAGAGGCCTAG
CATTGGCCCCGTCGATGAACCTCCCTTCTCCGACCGCGATTTTCAGCCGT
TATCGGGCTCTGCTGGCGAGCCTTCTGGCTTCGATATAGGCTCTTCCTCT
GCATCCCCTCCGCCCTCCTCGAGTCCCCCGGATCTCGGCTGGGAGGAGGA
GCTGTGGGCCCAGCAAGAAAGGGAGCTCTTGGCTCAATCTGCTGCTGAGG
CGAACACTCCAGCTTCTTCCTCTGGCGGGAAAAAGAAGAAGAATAAGAAA
ATTACACTCATGTCGACCAATATCCAAAGAGGGGCATAGATGAGATCCAC
GACCAGTCGCAAGGGACAGACGTCCATCACTCATCTGATGAACTTCTCCC
TTCCCCCTCGTCCTCAGTACCATCCTCCACCCCGTAATACTCGCCGCTAT
ACGTCCTGGGGTCCAGGTTCCGGCTACCATGCCATGGACAAATCCCGCTA
CGTTCATGCCAACTATCGCTTTATTGTGACGCCAAATCGCAACTACCATG
CACAAGCGGCCAATGCTGATGTCCATCTTGACTGGGATTCAGTGATGCAG
GTCTTGGTATCAGAGCAGACACAGTCAGCTAGCTGCCCCATCTGTTTGTC
CACACCGGTAGCGCCACGCATGGCTCGTTGTGGTCATATATTCTGCCTTC
CTTGTTTGATTCGCTACATGCATTCGACTGACGAGGAAAAACCGGTTCCT
GAGAAGAAGCCACGATGGAAAAAGTGCCCCATCTGTTGGGACTCTGTGTA
CATTTCGGAAACTCGGCCTGTGCGATGGTTTCGTGGCCAAGAAGGGGACC
TCCCATTCGAGGGGGGTGATATCGTGCTAAGGCTAGTGAAAAGAGAGCCC
GGAAGCACGTTAGCACTCCCACGGGATGGAGCTGAGGGAATAGCACCAGA
TGAGGATGTTCCGTGGTATCATGCTGCAGAAGTGGCTGATTACGCGCGCA
TAATGAAAGGAGGTGAAGATTATATGAAAGAACAATACGACATTGAGATT
GATGAGCTCCGCAGGCAGGAGCTTGAGGATGAGCTTTTATTTGGAGATGA
TACTACTTGGACACGGAAGGCGGTTGCAGCAATTGCAGATGCCAAATCCA
AGGTAGAGGGTATAGGGAACCCACCCGAGATTGTGCGACTGCCCGTCCCA
AGCCAAGAGCCAAAGGAACCTGTCGCCGCACACTCACCACCAGAGGAAAT
TGCTGCCATGTATGCATCGCAGCATGCAATCAAGTCAGGCCAAAGTTCGT
CTGCGGAGTCTATCCCCGCGTCAGATACTGGGCCTGGTTCGGCCTCCACT
CCGGAGACGTCCAATGATGTGGATCGTACAGCCGAAGCTTTGGGCCAGGT
TGACCTGAATACAACCTCTGCCCCGAAAAAGAAAAAGAGAGATCCTGGAC
ACGGCCGAAATAATATGCCCTCAAAGCGAGGTCCTACTACATCTGACCAT
GCGTTCTTCTTCTACCAAGCTCTACCCCAATTCTACCTTTCGCCCTTGGA
CATCCGCATCTTGAAAGCTGCATTTGGCGATTACTCTTCATTCCCGGCCA
CCATTCTCCCTAGGGTTGAGCGTATTTCGAGCGGTCATATTGTGGACGAC
GAGCTACGCAAACGAGTCAAGTATCTCAGCCACCTGCCGCAAGGTTGTGA
GGTGAACTTTCTCGAGTGTGACTGGAGAGACGTAGTTGTGCCGGAGGTGC
TAGAAAATTTCAAGTCGGAAACTGAAAAGAGACGGAAGCGCAATAAGGAG
AAAGAGGTGCGAGAAGAGAAGGATCGCATCCGAGCGGAGAAAGAAGAGGA
TGAAAAGCGCTGGGCAGCGGCGCGCCGGAAGAGGCCTAGCATTGGCCCCG
TCGATGAACCTCCCTTCTCCGACCGCGATTTTCAGCCGTTATCGGGCTCT
GCTGGCGAGCCTTCTGGCTTCGATATAGGCTCTTCCTCTGCATCCCCTCC
GCCCTCCTCGAGTCCCCCGGATCTCGGCTGGGAGGAGGAGCTGTGGGCCC
AGCAAGAAAGGGAGCTCTTGGCTCAATCTGCTGCTGAGGCGAACACTCCA
GCTTCTTCCTCTGGCGGGAAAAAGAAGAAGAATAAGAAAATTACACTCAT
GTCGACCAATATCCAAAGAGGGGCATAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0046872metal ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_3545CAN33_3545Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_3545-T1.exon1CAN33_3545-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_3545-T1.exon2CAN33_3545-T1.exon2Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_3545-T1.cdsCAN33_3545-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_3545-T1CAN33_3545-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR017907
DBxrefInterPro:IPR018957
DBxrefInterPro:IPR013083
DBxrefInterPro:IPR001841
DBxrefPFAM:PF13445
DBxrefPFAM:PF00097
ProductZinc finger C3HC4 type (RING finger) family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000004.1supercontigNKJJ01000004.1:2269915..2271833 +
Powered by Drupal