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CAN33_3730-T1, CAN33_3730-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_3730-T1
Unique NameCAN33_3730-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000004.1:2373804..2375021+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_3730-T1 ID=CAN33_3730-T1|Name=CAN33_3730-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1218bp|location=Sequence derived from alignment at NKJJ01000004.1:2373804..2375021+ (Aspergillus niger FDAARGOS_311)
ATGCCTGCCACCACGGCGGACGCCCTTTCCCTCGTTCAGCGCACCGTCAC
GGTCGCTCCGCTAGTTCTTCTCTCCGTCGCAGATCACTACGGCCGCTCGG
CCAAGGGTACCCGGAAACGTGTGGTTGGTGTGCTGCTGGGTGAGAACTCG
GGCCAGAATGTCCGGGTATCGAACAGCTTTGCGGGTGCGTCATTGACCTT
CTATTTACCTTCGGTATCTCTTTCAGTGTCCACGTGCTGACAGTTCCTTC
TCCTAGTACCCTTCGAGGAAGATGAGAAGGACCCCTCCGTTTGGTTCCTA
GATCACAACTTTGTCGAGTCGATGAGGGACATGTTCAAGAAGATCAATGC
TCGTGAGAAGCTGGTTGGATGGTATCACTCGGGCCCGAAGCTGCGGGCCT
CGGATTTGGAAATCAACGAACTCTTCAAGCGCTACACACCGAACCCTCTG
CTGGTGATTGTGGATGTCCAACCGAAGGAAGTCGGCGTTCCTACGGATGC
TTACTTTGCTGTGGATGAGATCAAGGATGTGAGTAACTATGCGCGCCGTC
GTACCGGACCTCGTTAAAGGACATATGGACTAATCATCACAATGCTGTAA
CAGGATGGCACCACAACATCAAAGACCTTCGTCCACACCCCGTCTATAAT
CGAAGCTGAGGAAGCTGAGGAAATTGGAGTGGAGCACCTTCTCCGGGATA
TCAGGGATGTCGCTGTCGGAACCCTCTCCACCCGCATAACGTCGCAGCTT
CAGTCGCTGCAGGGTCTGCACCTGCGTTTGCGCGACATCGGCCAATACCT
GCAGAAGGTTCTTGACCACGAACTCCCCGTCAACCACGCCATTTTGGGCA
ACCTCCAGGACGTCTTCAACCTCCTCCCCAACCTTTCCACACCAGCCGCC
ACGCCGCGCATCAGCGGCGCGCCCGAACAGCCGACGGAGAACAGCGAGCT
CGCACGGGCCATGAGCATCAAGACCAACGATCAATTAATGGCGATCTACT
TGAGCAGCTTGATCCGCGCCATCACCGCATTCCACGACTTGATCGAGAAC
AAGATCCAGAACCGGCAGCAACAAGAAGAGAACGAGCTGAAGAGGGAACA
GGAGGCCAACGCGGCCAAGACCGAGAAGGAGGCCGCGAAGAAGGCCAACA
GTGCCGCCAATGGAGAGCAGAAGGAGGGTCAAGACAAGGAGAAGGCCAAG
AAGAGCCAGAAGGAGTAG
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Coding sequence (CDS) from alignment at NKJJ01000004.1:2373804..2375021+

>CAN33_3730-T1 ID=CAN33_3730-T1|Name=CAN33_3730-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3213bp|location=Sequence derived from alignment at NKJJ01000004.1:2373804..2375021+ (Aspergillus niger FDAARGOS_311)
ATGCCTGCCACCACGGCGGACGCCCTTTCCCTCGTTCAGCGCACCGTCAC
GGTCGCTCCGCTAGTTCTTCTCTCCGTCGCAGATCACTACGGCCGCTCGG
CCAAGGGTACCCGGAAACGTGTGGTTGGTGTGCTGCTGGGTGAGAACTCG
GGCCAGAATGTCCGGGTATCGAACAGCTTTGCGGTACCCTTCGAGGAAGA
TGAGAAGGACCCCTCCGTTTGGTTCCTAGATCACAACTTTGTCGAGTCGA
TGAGGGACATGTTCAAGAAGATCAATGCTCGTGAGAAGCTGGTTGGATGG
TATCACTCGGGCCCGAAGCTGCGGGCCTCGGATTTGGAAATCAACGAACT
CTTCAAGCGCTACACACCGAACCCTCTGCTGGTGATTGTGGATGTCCAAC
CGAAGGAAGTCGGCGTTCCTACGGATGCTTACTTTGCTGTGGATGAGATC
AAGGATGATGGCACCACAACATCAAAGACCTTCGTCCACACCCCGTCTAT
AATCGAAGCTGAGGAAGCTGAGGAAATTGGAGTGGAGCACCTTCTCCGGG
ATATCAGGGATGTCGCTGTCGGAACCCTCTCCACCCGCATAACGTCGCAG
CTTCAGTCGCTGCAGGGTCTGCACCTGCGTTTGCGCGACATCGGCCAATA
CCTGCAGAAGGTTCTTGACCACGAACTCCCCGTCAACCACGCCATTTTGG
GCAACCTCCAGGACGTCTTCAACCTCCTCCCCAACCTTTCCACACCAGCC
GCCACGCCGCGCATCAGCGGCGCGCCCGAACAGCCGACGGAGAACAGCGA
GCTCGCACGGGCCATGAGCATCAAGACCAACGATCAATTAATGGCGATCT
ACTTGAGCAGCTTGATCCGCGCCATCACCGCATTCCACGACTTGATCGAG
AACAAGATCCAGAACCGGCAGCAACAAGAAGAGAACGAGCTGAAGAGGGA
ACAGGAGGCCAACGCGGCCAAGACCGAGAAGGAGGCCGCGAAGAAGGCCA
ACAGTGCCGCCAATGGAGAGCAGAAGGAGGGTCAAGACAAGGAGAAGGCC
AAGAAGAGCCAGAAGGAGTAGATGCCTGCCACCACGGCGGACGCCCTTTC
CCTCGTTCAGCGCACCGTCACGGTCGCTCCGCTAGTTCTTCTCTCCGTCG
CAGATCACTACGGCCGCTCGGCCAAGGGTACCCGGAAACGTGTGGTTGGT
GTGCTGCTGGGTGAGAACTCGGGCCAGAATGTCCGGGTATCGAACAGCTT
TGCGGTACCCTTCGAGGAAGATGAGAAGGACCCCTCCGTTTGGTTCCTAG
ATCACAACTTTGTCGAGTCGATGAGGGACATGTTCAAGAAGATCAATGCT
CGTGAGAAGCTGGTTGGATGGTATCACTCGGGCCCGAAGCTGCGGGCCTC
GGATTTGGAAATCAACGAACTCTTCAAGCGCTACACACCGAACCCTCTGC
TGGTGATTGTGGATGTCCAACCGAAGGAAGTCGGCGTTCCTACGGATGCT
TACTTTGCTGTGGATGAGATCAAGGATGATGGCACCACAACATCAAAGAC
CTTCGTCCACACCCCGTCTATAATCGAAGCTGAGGAAGCTGAGGAAATTG
GAGTGGAGCACCTTCTCCGGGATATCAGGGATGTCGCTGTCGGAACCCTC
TCCACCCGCATAACGTCGCAGCTTCAGTCGCTGCAGGGTCTGCACCTGCG
TTTGCGCGACATCGGCCAATACCTGCAGAAGGTTCTTGACCACGAACTCC
CCGTCAACCACGCCATTTTGGGCAACCTCCAGGACGTCTTCAACCTCCTC
CCCAACCTTTCCACACCAGCCGCCACGCCGCGCATCAGCGGCGCGCCCGA
ACAGCCGACGGAGAACAGCGAGCTCGCACGGGCCATGAGCATCAAGACCA
ACGATCAATTAATGGCGATCTACTTGAGCAGCTTGATCCGCGCCATCACC
GCATTCCACGACTTGATCGAGAACAAGATCCAGAACCGGCAGCAACAAGA
AGAGAACGAGCTGAAGAGGGAACAGGAGGCCAACGCGGCCAAGACCGAGA
AGGAGGCCGCGAAGAAGGCCAACAGTGCCGCCAATGGAGAGCAGAAGGAG
GGTCAAGACAAGGAGAAGGCCAAGAAGAGCCAGAAGGAGTAGATGCCTGC
CACCACGGCGGACGCCCTTTCCCTCGTTCAGCGCACCGTCACGGTCGCTC
CGCTAGTTCTTCTCTCCGTCGCAGATCACTACGGCCGCTCGGCCAAGGGT
ACCCGGAAACGTGTGGTTGGTGTGCTGCTGGGTGAGAACTCGGGCCAGAA
TGTCCGGGTATCGAACAGCTTTGCGGTACCCTTCGAGGAAGATGAGAAGG
ACCCCTCCGTTTGGTTCCTAGATCACAACTTTGTCGAGTCGATGAGGGAC
ATGTTCAAGAAGATCAATGCTCGTGAGAAGCTGGTTGGATGGTATCACTC
GGGCCCGAAGCTGCGGGCCTCGGATTTGGAAATCAACGAACTCTTCAAGC
GCTACACACCGAACCCTCTGCTGGTGATTGTGGATGTCCAACCGAAGGAA
GTCGGCGTTCCTACGGATGCTTACTTTGCTGTGGATGAGATCAAGGATGA
TGGCACCACAACATCAAAGACCTTCGTCCACACCCCGTCTATAATCGAAG
CTGAGGAAGCTGAGGAAATTGGAGTGGAGCACCTTCTCCGGGATATCAGG
GATGTCGCTGTCGGAACCCTCTCCACCCGCATAACGTCGCAGCTTCAGTC
GCTGCAGGGTCTGCACCTGCGTTTGCGCGACATCGGCCAATACCTGCAGA
AGGTTCTTGACCACGAACTCCCCGTCAACCACGCCATTTTGGGCAACCTC
CAGGACGTCTTCAACCTCCTCCCCAACCTTTCCACACCAGCCGCCACGCC
GCGCATCAGCGGCGCGCCCGAACAGCCGACGGAGAACAGCGAGCTCGCAC
GGGCCATGAGCATCAAGACCAACGATCAATTAATGGCGATCTACTTGAGC
AGCTTGATCCGCGCCATCACCGCATTCCACGACTTGATCGAGAACAAGAT
CCAGAACCGGCAGCAACAAGAAGAGAACGAGCTGAAGAGGGAACAGGAGG
CCAACGCGGCCAAGACCGAGAAGGAGGCCGCGAAGAAGGCCAACAGTGCC
GCCAATGGAGAGCAGAAGGAGGGTCAAGACAAGGAGAAGGCCAAGAAGAG
CCAGAAGGAGTAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005838proteasome regulatory particle
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPN8CAN33_3730Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_3730-T1.exon1CAN33_3730-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_3730-T1.exon2CAN33_3730-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_3730-T1.exon3CAN33_3730-T1.exon3Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_3730-T1.cdsCAN33_3730-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_3730-T1CAN33_3730-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09263KRO
NoteMEROPS:MER0030134
DBxrefInterPro:IPR033858
DBxrefInterPro:IPR037518
DBxrefInterPro:IPR024969
DBxrefInterPro:IPR000555
DBxrefPFAM:PF13012
DBxrefPFAM:PF01398
Productproteasome regulatory particle subunit
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000004.1supercontigNKJJ01000004.1:2373804..2375021 +
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