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CAN33_37555-T1, CAN33_37555-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_37555-T1
Unique NameCAN33_37555-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000017.1:924348..925568-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_37555-T1 ID=CAN33_37555-T1|Name=CAN33_37555-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1221bp|location=Sequence derived from alignment at NKJJ01000017.1:924348..925568- (Aspergillus niger FDAARGOS_311)
ATGCACTCTTACCAGCTTCTTGGCCTGGCCGCTGTCGGCTCCCTCGTCTC
TGCCGCCCCCGCTCCTTCTCGCGTCTCCGAGTTCGCTAAGAAGGCCTCTA
CCTGCACCTTCACCTCTGCCTCTGAGGCCAGCGAGAGCATCTCCAGCTGC
TCCGATGTTGTCCTGAGCAGCATCGAGGTCCCCGCTGGCGAGACCCTCGA
CCTGTCCGATGCTGCTGATGGCTCCACCGTATGTGCTCTCAGCCGTCTTC
CATCCTGGCTATCACGCTAACACCATCTAGATCACCTTCGAGGGCACCAC
TTCCTTCGGATACAAGGAATGGAAGGGCCCCCTGATCCGCTTCGGTGGTA
AGGATCTGACTGTCACCATGGCCGACGGCGCTGTCATCGACGGTGACGGT
TCCCGCTGGTGGGACAGCAAGGGTACCAACGGTGGCAAGACCAAGCCCAA
GTTCATGTACATCCACGATGTTGAGGACTCGACCTTCAAGGGCATCAACA
TCAAGAACACTCCCGTCCAGGCCATCAGTGTCCAGGCTACCAACGTCCAC
CTGAACGACTTCACCATCGACAACTCCGACGGTGATGACAACGGTGGCCA
CAACACCGACGGTTTCGACATCAGCGAGTCTACCGGTGTCTACATCAGCG
GTGCTACCGTCAAGAACCAGGACGACTGCATTGCCATCAACTCTGGCGAG
GCACGATATCCCTATTCCACTATCATTCCTTCCATTCATATCGCTAACAA
TCAAACCCACAGAGCATCTCTTTCACCGGCGGTACCTGCTCCGGTGGCCA
CGGTCTCTCCATCGGCTCTGTCGGTGGCCGTGATGACAACACCGTCAAGA
ACGTGACCATCTCCGACTCCACTGTCAGCAACTCCGCCAACGGTGTCCGC
ATCAAGACCATCTACAAGGAGACCGGTGATGTCAGCGAGATCACCTACTC
TAACATCCAGCTCTCCGGAATCACCGACTACGGTATCGTCATCGAGCAGG
ACTACGAGAACGGCTCTCCCACCGGCACCCCCTCCACCGGTATCCCCATC
ACTGATGTCACCGTTGACGGTGTCACCGGTACTCTCGAGGATGACGCCAC
CCAGGTCTACATTCTCTGCGGTGACGGCTCTTGCTCTGACTGGACCTGGT
CCGGTGTTGACCTCTCTGGTGGCAAGACCAGCGATAAATGCGAGAACGTT
CCTTCCGGTGCTTCTTGCTAA
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Coding sequence (CDS) from alignment at NKJJ01000017.1:924348..925568-

>CAN33_37555-T1 ID=CAN33_37555-T1|Name=CAN33_37555-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3195bp|location=Sequence derived from alignment at NKJJ01000017.1:924348..925568- (Aspergillus niger FDAARGOS_311)
AGCATCTCTTTCACCGGCGGTACCTGCTCCGGTGGCCACGGTCTCTCCAT
CGGCTCTGTCGGTGGCCGTGATGACAACACCGTCAAGAACGTGACCATCT
CCGACTCCACTGTCAGCAACTCCGCCAACGGTGTCCGCATCAAGACCATC
TACAAGGAGACCGGTGATGTCAGCGAGATCACCTACTCTAACATCCAGCT
CTCCGGAATCACCGACTACGGTATCGTCATCGAGCAGGACTACGAGAACG
GCTCTCCCACCGGCACCCCCTCCACCGGTATCCCCATCACTGATGTCACC
GTTGACGGTGTCACCGGTACTCTCGAGGATGACGCCACCCAGGTCTACAT
TCTCTGCGGTGACGGCTCTTGCTCTGACTGGACCTGGTCCGGTGTTGACC
TCTCTGGTGGCAAGACCAGCGATAAATGCGAGAACGTTCCTTCCGGTGCT
TCTTGCTAAATCACCTTCGAGGGCACCACTTCCTTCGGATACAAGGAATG
GAAGGGCCCCCTGATCCGCTTCGGTGGTAAGGATCTGACTGTCACCATGG
CCGACGGCGCTGTCATCGACGGTGACGGTTCCCGCTGGTGGGACAGCAAG
GGTACCAACGGTGGCAAGACCAAGCCCAAGTTCATGTACATCCACGATGT
TGAGGACTCGACCTTCAAGGGCATCAACATCAAGAACACTCCCGTCCAGG
CCATCAGTGTCCAGGCTACCAACGTCCACCTGAACGACTTCACCATCGAC
AACTCCGACGGTGATGACAACGGTGGCCACAACACCGACGGTTTCGACAT
CAGCGAGTCTACCGGTGTCTACATCAGCGGTGCTACCATGCACTCTTACC
AGCTTCTTGGCCTGGCCGCTGTCGGCTCCCTCGTCTCTGCCGCCCCCGCT
CCTTCTCGCGTCTCCGAGTTCGCTAAGAAGGCCTCTACCTGCACCTTCAC
CTCTGCCTCTGAGGCCAGCGAGAGCATCTCCAGCTGCTCCGATGTTGTCC
TGAGCAGCATCGAGGTCCCCGCTGGCGAGACCCTCGACCTGTCCGATGCT
GCTGATGGCTCCACCAGCATCTCTTTCACCGGCGGTACCTGCTCCGGTGG
CCACGGTCTCTCCATCGGCTCTGTCGGTGGCCGTGATGACAACACCGTCA
AGAACGTGACCATCTCCGACTCCACTGTCAGCAACTCCGCCAACGGTGTC
CGCATCAAGACCATCTACAAGGAGACCGGTGATGTCAGCGAGATCACCTA
CTCTAACATCCAGCTCTCCGGAATCACCGACTACGGTATCGTCATCGAGC
AGGACTACGAGAACGGCTCTCCCACCGGCACCCCCTCCACCGGTATCCCC
ATCACTGATGTCACCGTTGACGGTGTCACCGGTACTCTCGAGGATGACGC
CACCCAGGTCTACATTCTCTGCGGTGACGGCTCTTGCTCTGACTGGACCT
GGTCCGGTGTTGACCTCTCTGGTGGCAAGACCAGCGATAAATGCGAGAAC
GTTCCTTCCGGTGCTTCTTGCTAAATCACCTTCGAGGGCACCACTTCCTT
CGGATACAAGGAATGGAAGGGCCCCCTGATCCGCTTCGGTGGTAAGGATC
TGACTGTCACCATGGCCGACGGCGCTGTCATCGACGGTGACGGTTCCCGC
TGGTGGGACAGCAAGGGTACCAACGGTGGCAAGACCAAGCCCAAGTTCAT
GTACATCCACGATGTTGAGGACTCGACCTTCAAGGGCATCAACATCAAGA
ACACTCCCGTCCAGGCCATCAGTGTCCAGGCTACCAACGTCCACCTGAAC
GACTTCACCATCGACAACTCCGACGGTGATGACAACGGTGGCCACAACAC
CGACGGTTTCGACATCAGCGAGTCTACCGGTGTCTACATCAGCGGTGCTA
CCATGCACTCTTACCAGCTTCTTGGCCTGGCCGCTGTCGGCTCCCTCGTC
TCTGCCGCCCCCGCTCCTTCTCGCGTCTCCGAGTTCGCTAAGAAGGCCTC
TACCTGCACCTTCACCTCTGCCTCTGAGGCCAGCGAGAGCATCTCCAGCT
GCTCCGATGTTGTCCTGAGCAGCATCGAGGTCCCCGCTGGCGAGACCCTC
GACCTGTCCGATGCTGCTGATGGCTCCACCAGCATCTCTTTCACCGGCGG
TACCTGCTCCGGTGGCCACGGTCTCTCCATCGGCTCTGTCGGTGGCCGTG
ATGACAACACCGTCAAGAACGTGACCATCTCCGACTCCACTGTCAGCAAC
TCCGCCAACGGTGTCCGCATCAAGACCATCTACAAGGAGACCGGTGATGT
CAGCGAGATCACCTACTCTAACATCCAGCTCTCCGGAATCACCGACTACG
GTATCGTCATCGAGCAGGACTACGAGAACGGCTCTCCCACCGGCACCCCC
TCCACCGGTATCCCCATCACTGATGTCACCGTTGACGGTGTCACCGGTAC
TCTCGAGGATGACGCCACCCAGGTCTACATTCTCTGCGGTGACGGCTCTT
GCTCTGACTGGACCTGGTCCGGTGTTGACCTCTCTGGTGGCAAGACCAGC
GATAAATGCGAGAACGTTCCTTCCGGTGCTTCTTGCTAAATCACCTTCGA
GGGCACCACTTCCTTCGGATACAAGGAATGGAAGGGCCCCCTGATCCGCT
TCGGTGGTAAGGATCTGACTGTCACCATGGCCGACGGCGCTGTCATCGAC
GGTGACGGTTCCCGCTGGTGGGACAGCAAGGGTACCAACGGTGGCAAGAC
CAAGCCCAAGTTCATGTACATCCACGATGTTGAGGACTCGACCTTCAAGG
GCATCAACATCAAGAACACTCCCGTCCAGGCCATCAGTGTCCAGGCTACC
AACGTCCACCTGAACGACTTCACCATCGACAACTCCGACGGTGATGACAA
CGGTGGCCACAACACCGACGGTTTCGACATCAGCGAGTCTACCGGTGTCT
ACATCAGCGGTGCTACCATGCACTCTTACCAGCTTCTTGGCCTGGCCGCT
GTCGGCTCCCTCGTCTCTGCCGCCCCCGCTCCTTCTCGCGTCTCCGAGTT
CGCTAAGAAGGCCTCTACCTGCACCTTCACCTCTGCCTCTGAGGCCAGCG
AGAGCATCTCCAGCTGCTCCGATGTTGTCCTGAGCAGCATCGAGGTCCCC
GCTGGCGAGACCCTCGACCTGTCCGATGCTGCTGATGGCTCCACC
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_37555CAN33_37555Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_37555-T1CAN33_37555-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_37555-T1.cdsCAN33_37555-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_37555-T1.exon3CAN33_37555-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_37555-T1.exon2CAN33_37555-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_37555-T1.exon1CAN33_37555-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteSECRETED:SignalP(1-18)
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR012334
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR006626
DBxrefPFAM:PF00295
ProductGlycosyl hydrolases family 28 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000017.1supercontigNKJJ01000017.1:924348..925568 -
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