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CAN33_37875-T1, CAN33_37875-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_37875-T1
Unique NameCAN33_37875-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000017.1:1101009..1102688+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_37875-T1 ID=CAN33_37875-T1|Name=CAN33_37875-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1680bp|location=Sequence derived from alignment at NKJJ01000017.1:1101009..1102688+ (Aspergillus niger FDAARGOS_311)
ATGGCGGTCCCGGAGACACAGCCCGCTCCGCAAGGAAGCGTTGCCGACCA
GAATGCGCCTATAGCTGCTGCTGCTGAACCGAGAAAGAAGCTCCTTGGAA
GACAGTTCTACGAAAGTATTGGAAGCCCGAAGTACATTATTGCACCTATG
GTGGACCGGTCTGAGTTTGTAGGTTCCCCTACGAATGTACTTTTTGGATC
TCAACTAACCGGCCTGGAGGCGTGGCGCATGCTCACTAGGTCGTTCATGA
CACCGGAAGACCAGAAAAAGGTTCTCGCATACTCCCCCATGTACCACGCG
CGCTTGTTCCGTGAGCAAGCGAATGTCCGCGTACAGCACTTCCACCCAAC
TCGCGCTGCCGCCGGCAAAGGCGAGGATGAATCGCCGTATCTCGACGGAA
ACCCTTCGTTCGATCGGCCTCTATTCGTACAATTCTGCGCCAATGATCCT
GATGATTTCTTGGAGGCCGCGCGTCATGTGGCACCATATTGCGATGCAGT
GGATCTCAATCTGGGATGTCCCCAAGGTATTGCGAAGAGGGGTCACTATG
GTGCTTTCCTTCAGGAGGACTGGGACCTGATTTACAGGCTGATTAACCGA
CTTCACAACGAACTCTCGATCCCAGTCACTGCCAAGTTTCGTATTCAGGA
AACGAAAGAGAAAACGCTCGAATATGCGAAGATGATCTTGTCTGCTGGTG
CAAACATAATCACTGTGCATGGACGGAGAAGAGAACAGAAAGGTCACAAC
ACTGGACTGGCTGATTGGAGCTACATTCGCTATCTCCGCGATAATCTTCC
CCCAGAGACGGTCATCTTCGCGAACGGCAACAACCTGAACTATGAAGATC
TGGACCGTTGTCTGGAAGAGACAGGAGCCGATGGTGTCATGAGTGCGGAA
GGCAACTTGTCTGATCCGTCAATTTTCAGCAAGCCCCCTCCGGTTGGCAG
TGAAGGAAGGGAATACTGGCGAGGCAGGGACGGAAAGGGCGGATATCGGA
TTGACGCCATGCTACGGCGGTACTTGGACATCATTTACAAGTACGTTCTT
GAACAACCTGTTCCGGAAAGGAAGCCTCTTTGGCTTCCCTCGGACGCAGT
GGAAGAGGAATTTGAACAGACAACCGAAACGACCGAGGAAGCAGAAGACG
GCCCACCTAAGAAGAAGCAAAAGCGCGAGAAGTCGAAGAGAGCGGCCTCC
CCCAGTCTTGGTGTAATGCAGGGTCATCTCTTCCAGCTGCTTCGCCCCAT
GGTCTCCGTGCATACCAATGTCCGTGATGCGCTAGCGAGATCAAGACCTG
GCGATATGCCCGCATTCGAGAATGTCTTGGCTCTCGTTGAGCAGGCAATC
AAGAAGGGTCTCAAGGAATACGAGCAGTTCCCGGAACGCTTTGAGAAGGA
TCCGAACCAAGAACTGACCGGATCCAAAGCGACTATTGCCGAGTACGGCA
GACCTTGGTGGATCTGCCAGCCACACATTCGGCCACTGCCTGAAGAGGCT
GTCGAGCTGGGCGCACTTACTGTGAAGAAGAAGAACGATGGCAACGAAAA
GCCTAAGGCGGACGAGTCTTCTGAAAAGGCCACCCCTGCTGCAGAGGGTT
CTGCCACTCCTTCGAAGTCGGACGTGGACGCGACCACCCCTGCCACGACG
ACTACTCCGGACAACCTGGTGAGCGGTTGA
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Coding sequence (CDS) from alignment at NKJJ01000017.1:1101009..1102688+

>CAN33_37875-T1 ID=CAN33_37875-T1|Name=CAN33_37875-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3258bp|location=Sequence derived from alignment at NKJJ01000017.1:1101009..1102688+ (Aspergillus niger FDAARGOS_311)
ATGGCGGTCCCGGAGACACAGCCCGCTCCGCAAGGAAGCGTTGCCGACCA
GAATGCGCCTATAGCTGCTGCTGCTGAACCGAGAAAGAAGCTCCTTGGAA
GACAGTTCTACGAAAGTATTGGAAGCCCGAAGTACATTATTGCACCTATG
GTGGACCGGTCTGAGTTTGCGTGGCGCATGCTCACTAGGTCGTTCATGAC
ACCGGAAGACCAGAAAAAGGTTCTCGCATACTCCCCCATGTACCACGCGC
GCTTGTTCCGTGAGCAAGCGAATGTCCGCGTACAGCACTTCCACCCAACT
CGCGCTGCCGCCGGCAAAGGCGAGGATGAATCGCCGTATCTCGACGGAAA
CCCTTCGTTCGATCGGCCTCTATTCGTACAATTCTGCGCCAATGATCCTG
ATGATTTCTTGGAGGCCGCGCGTCATGTGGCACCATATTGCGATGCAGTG
GATCTCAATCTGGGATGTCCCCAAGGTATTGCGAAGAGGGGTCACTATGG
TGCTTTCCTTCAGGAGGACTGGGACCTGATTTACAGGCTGATTAACCGAC
TTCACAACGAACTCTCGATCCCAGTCACTGCCAAGTTTCGTATTCAGGAA
ACGAAAGAGAAAACGCTCGAATATGCGAAGATGATCTTGTCTGCTGGTGC
AAACATAATCACTGTGCATGGACGGAGAAGAGAACAGAAAGGTCACAACA
CTGGACTGGCTGATTGGAGCTACATTCGCTATCTCCGCGATAATCTTCCC
CCAGAGACGGTCATCTTCGCGAACGGCAACAACCTGAACTATGAAGATCT
GGACCGTTGTCTGGAAGAGACAGGAGCCGATGGTGTCATGAGTGCGGAAG
GCAACTTGTCTGATCCGTCAATTTTCAGCAAGCCCCCTCCGGTTGGCAGT
GAAGGAAGGGAATACTGGCGAGGCAGGGACGGAAAGGGCGGATATCGGAT
TGACGCCATGCTACGGCGGTACTTGGACATCATTTACAAGTACGTTCTTG
AACAACCTGTTCCGGAAAGGAAGCCTCTTTGGCTTCCCTCGGACGCAGTG
GAAGAGGAATTTGAACAGACAACCGAAACGACCGAGGAAGCAGAAGACGG
CCCACCTAAGAAGAAGCAAAAGCGCGAGAAGTCGAAGAGAGCGGCCTCCC
CCAGTCTTGGTGTAATGCAGGGTCATCTCTTCCAGCTGCTTCGCCCCATG
GTCTCCGTGCATACCAATGTCCGTGATGCGCTAGCGAGATCAAGACCTGG
CGATATGCCCGCATTCGAGAATGTCTTGGCTCTCGTTGAGCAGGCAATCA
AGAAGGGTCTCAAGGAATACGAGCAGTTCCCGGAACGCTTTGAGAAGGAT
CCGAACCAAGAACTGACCGGATCCAAAGCGACTATTGCCGAGTACGGCAG
ACCTTGGTGGATCTGCCAGCCACACATTCGGCCACTGCCTGAAGAGGCTG
TCGAGCTGGGCGCACTTACTGTGAAGAAGAAGAACGATGGCAACGAAAAG
CCTAAGGCGGACGAGTCTTCTGAAAAGGCCACCCCTGCTGCAGAGGGTTC
TGCCACTCCTTCGAAGTCGGACGTGGACGCGACCACCCCTGCCACGACGA
CTACTCCGGACAACCTGGTGAGCGGTTGAATGGCGGTCCCGGAGACACAG
CCCGCTCCGCAAGGAAGCGTTGCCGACCAGAATGCGCCTATAGCTGCTGC
TGCTGAACCGAGAAAGAAGCTCCTTGGAAGACAGTTCTACGAAAGTATTG
GAAGCCCGAAGTACATTATTGCACCTATGGTGGACCGGTCTGAGTTTGCG
TGGCGCATGCTCACTAGGTCGTTCATGACACCGGAAGACCAGAAAAAGGT
TCTCGCATACTCCCCCATGTACCACGCGCGCTTGTTCCGTGAGCAAGCGA
ATGTCCGCGTACAGCACTTCCACCCAACTCGCGCTGCCGCCGGCAAAGGC
GAGGATGAATCGCCGTATCTCGACGGAAACCCTTCGTTCGATCGGCCTCT
ATTCGTACAATTCTGCGCCAATGATCCTGATGATTTCTTGGAGGCCGCGC
GTCATGTGGCACCATATTGCGATGCAGTGGATCTCAATCTGGGATGTCCC
CAAGGTATTGCGAAGAGGGGTCACTATGGTGCTTTCCTTCAGGAGGACTG
GGACCTGATTTACAGGCTGATTAACCGACTTCACAACGAACTCTCGATCC
CAGTCACTGCCAAGTTTCGTATTCAGGAAACGAAAGAGAAAACGCTCGAA
TATGCGAAGATGATCTTGTCTGCTGGTGCAAACATAATCACTGTGCATGG
ACGGAGAAGAGAACAGAAAGGTCACAACACTGGACTGGCTGATTGGAGCT
ACATTCGCTATCTCCGCGATAATCTTCCCCCAGAGACGGTCATCTTCGCG
AACGGCAACAACCTGAACTATGAAGATCTGGACCGTTGTCTGGAAGAGAC
AGGAGCCGATGGTGTCATGAGTGCGGAAGGCAACTTGTCTGATCCGTCAA
TTTTCAGCAAGCCCCCTCCGGTTGGCAGTGAAGGAAGGGAATACTGGCGA
GGCAGGGACGGAAAGGGCGGATATCGGATTGACGCCATGCTACGGCGGTA
CTTGGACATCATTTACAAGTACGTTCTTGAACAACCTGTTCCGGAAAGGA
AGCCTCTTTGGCTTCCCTCGGACGCAGTGGAAGAGGAATTTGAACAGACA
ACCGAAACGACCGAGGAAGCAGAAGACGGCCCACCTAAGAAGAAGCAAAA
GCGCGAGAAGTCGAAGAGAGCGGCCTCCCCCAGTCTTGGTGTAATGCAGG
GTCATCTCTTCCAGCTGCTTCGCCCCATGGTCTCCGTGCATACCAATGTC
CGTGATGCGCTAGCGAGATCAAGACCTGGCGATATGCCCGCATTCGAGAA
TGTCTTGGCTCTCGTTGAGCAGGCAATCAAGAAGGGTCTCAAGGAATACG
AGCAGTTCCCGGAACGCTTTGAGAAGGATCCGAACCAAGAACTGACCGGA
TCCAAAGCGACTATTGCCGAGTACGGCAGACCTTGGTGGATCTGCCAGCC
ACACATTCGGCCACTGCCTGAAGAGGCTGTCGAGCTGGGCGCACTTACTG
TGAAGAAGAAGAACGATGGCAACGAAAAGCCTAAGGCGGACGAGTCTTCT
GAAAAGGCCACCCCTGCTGCAGAGGGTTCTGCCACTCCTTCGAAGTCGGA
CGTGGACGCGACCACCCCTGCCACGACGACTACTCCGGACAACCTGGTGA
GCGGTTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0008033tRNA processing
GO:0055114oxidation-reduction process
Vocabulary: Molecular Function
TermDefinition
GO:0050660flavin adenine dinucleotide binding
GO:0017150tRNA dihydrouridine synthase activity
GO:0003824catalytic activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_37875CAN33_37875Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_37875-T1.exon1CAN33_37875-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_37875-T1.exon2CAN33_37875-T1.exon2Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_37875-T1.cdsCAN33_37875-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_37875-T1CAN33_37875-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09262Q6S
DBxrefInterPro:IPR035587
DBxrefInterPro:IPR018517
DBxrefInterPro:IPR001269
DBxrefInterPro:IPR013785
DBxrefPFAM:PF01207
ProductDihydrouridine synthase (Dus) family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000017.1supercontigNKJJ01000017.1:1101009..1102688 +
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