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CAN33_38455-T1, CAN33_38455-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_38455-T1
Unique NameCAN33_38455-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000017.1:1459102..1461307+

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_38455-T1 ID=CAN33_38455-T1|Name=CAN33_38455-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=2206bp|location=Sequence derived from alignment at NKJJ01000017.1:1459102..1461307+ (Aspergillus niger FDAARGOS_311)
ATGCCTAGGCAGAATGCGGCTCGCATGGCATTTAGGCGAGAGATCACCTC
CCAGTTAAGGATCATGAGTCTCGGCATCGAGGAGCGTCCTGCCCTATGGC
CGTCCCTGCACATCAGCCCTGCAGGTTCCATGAAAGAAGCAGACGATAGT
TGGTCCCATCCTTTGATGGAACCTAGGAATAAGGATTGGCCAAAAATCGT
CATTCAGAGTGCGGTAGCAGGATCAATGCCCAGGCTCCGCCTTGAAGCCT
CCTGGTGGATAAATAACTCTAAGGGGCAAGTGCAGATCGTGGTCTTGATT
GGTGTGCGCAAAGATAGTAGGAGTATAGTACTCGAAAAGTATTTCCCAAA
GCCCTGTGTTCCCTCCAACCCAGGAGCGCAACCTGGGACAGCCTATTTTC
CAGACCTGATTTCAACTACTGAAGTGTGCTATGGAGATGACCCTCCAACT
GTTCGAGGCCCTTCAGTCACGTTGGAGTTCCAACGCTTAGTGGGTAGAAA
ACCACTGTTGTCTGAGCAAGACGTCATTCTGTGGCCAGAGCTGCTCTTGG
AAATCGCTGAAGACATCTTTGAGTATGACGGATTTCCCCCGCTCAGACTG
GCACGGTACAAAGCTCCCCATATTTTAAGCCCTCACCTGGGTAGTGACGC
CGTCCTTAGTTCTGATGGGTTCCTTGGTCACAGGACAAGGACTGAAAGGG
TTGAAAAAAGACAAGCACTTAGAATCAAACCATCAAGTATGGGATGATTT
GACTGATACGGAAACGTCGAAGAATCACCACTTTGTATCTAATCTAGATG
GTACTATCTTACATGAGGTTTACGGGAATTTAAACGGGCTCTTCATATAA
AGTGTTATATTTACTTCCCAATTGCACGATCAAATAGTTCATTAGACTGT
TTTGCAATGACCTTCGCTGCACACGTGAAGATGGTGATATAGTTAGATAG
GTGTTTTTGCCTGAGGCCACAGCATCACTTCCCTAATATATTGCCGTAAT
TGACCGCCCTGATATCGCAGCGATCTCCGCCTCAAGCAGTGCGTCGCCAT
TGATTTCTCTCTAGCTAGCATCAACGATCCTTTGTGCTCATTCAATATCA
GTATTATCGCTCTTTCATTAGACTGCTATAATTTCAGCGAATACACCGCC
GTATACTTCCCACCGAGCCATCTCTCACGCGCATCGCGCCACCTGCGCGC
ATCCGACTTGAGCTTATTTCGCTTGCAAAGAGCAGTTGCTCTTTGAATAC
CAAAATGCCCAAATATAAGTCATCTCCTCCCCTTTCGATGAAACCTTGAT
ACTGACAGTCACTTTACTCTTTTGTAGGACCACCCCAAGCCCTTCCACAT
CGACCCGCAGACTTGTCCATCGCGCATGCAATTCCTTCCACCCTCCTATC
CAGCCATTATCTCCGGAGTCACATCCCCACTGACCGATGTATCCAATCGA
ATATAGGCGACTACTGCGATGTCTACCTCACGCACGACTCGATGAGCGTG
CGCAAGGCGCACAACGCCGGACGTAACCACCTCAGAAACGTGCTGGAATA
CTACCAACGTACGGCGGCCCCATTCGCTTCAGACCATCTCAATGCGTGCT
GCTAACGCGACACCAGAAATCGGACAAGAAAAGGCCCAATCGGTCATCGA
TTCCATCACCTCGTCCTACGCCGCCGAAGGCCAGGCTGTCCCGAATCCCG
CAATGGCTCCCCCGGGGGCTTACCCTCCTCCATTTGGCTTCCCTGGTATG
TCACATCGCCACCTACTACACCTTCAGCAACAATCAAAGCAATCCACAAG
CTAACCACTGACATTCAGGCCGACCAGGTCAACTCCCTCCACCTCCCTTT
GGAATGCCTCCTCTGGGCGCACCCGGCGCACCGGGCATGCCTCCTCGTAC
GTTGCACCTATCCCCCACAAAGCAAACCAACACCATGAGTACCTAACCTT
CATGAAAACAGCCCCCGGAGCAAGAGGTCTCCCCTTTCCACCTCCCTTCC
CCGGTCCAGCAGGCGCCGCCCCTCCTGCCGGTCTCCCCCCTCTCCCCAAC
ATGCCCCCCGGTGCCCAGGGCTTCCCTCCTCCGCCTGGCGGATTCCCTCC
GAACTTCCCGACCCCTCCCCTGGTGCTGCTGCTGCCGGGTTCCCCCCCAT
CCCTCCCCCAGGTCAAGCTCCAGCAGGATACAGCCCCAGTCCTACGCCCG
GTATAG
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Coding sequence (CDS) from alignment at NKJJ01000017.1:1459102..1461307+

>CAN33_38455-T1 ID=CAN33_38455-T1|Name=CAN33_38455-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=4350bp|location=Sequence derived from alignment at NKJJ01000017.1:1459102..1461307+ (Aspergillus niger FDAARGOS_311)
ATGCCTAGGCAGAATGCGGCTCGCATGGCATTTAGGCGAGAGATCACCTC
CCAGTTAAGGATCATGAGTCTCGGCATCGAGGAGCGTCCTGCCCTATGGC
CGTCCCTGCACATCAGCCCTGCAGGTTCCATGAAAGAAGCAGACGATAGT
TGGTCCCATCCTTTGATGGAACCTAGGAATAAGGATTGGCCAAAAATCGT
CATTCAGAGTGCGGTAGCAGGATCAATGCCCAGGCTCCGCCTTGAAGCCT
CCTGGTGGATAAATAACTCTAAGGGGCAAGTGCAGATCGTGGTCTTGATT
GGTGTGCGCAAAGATAGCGACTACTGCGATGTCTACCTCACGCACGACTC
GATGAGCGTGCGCAAGGCGCACAACGCCGGACGTAACCACCTCAGAAACG
TGCTGGAATACTACCAACAAATCGGACAAGAAAAGGCCCAATCGGTCATC
GATTCCATCACCTCGTCCTACGCCGCCGAAGGCCAGGCTGTCCCGAATCC
CGCAATGGCTCCCCCGGGGGCTTACCCTCCTCCATTTGGCTTCCCTGGCC
GACCAGGTCAACTCCCTCCACCTCCCTTTGGAATGCCTCCTCTGGGCGCA
CCCGGCGCACCGGGCATGCCTCCTCCCCCCGGAGCAAGAGGTCTCCCCTT
TCCACCTCCCTTCCCCGGTCCAGCAGGCGCCGCCCCTCCTGCCGGTCTCC
CCCCTCTCCCCAACATGCCCCCCGGTGCCCAGGGCTTCCCTCCTCCGCCT
GGCGGATTCCCTCCGAACTTCCCGACCCCTCCCCTGGTGCTGCTGCTGCC
GGGTTCCCCCCCATCCCTCCCCCAGGTCAAGCTCCAGCAGGATACAGCCC
CAGTCCTACGCCCGGTATAGATGCCTAGGCAGAATGCGGCTCGCATGGCA
TTTAGGCGAGAGATCACCTCCCAGTTAAGGATCATGAGTCTCGGCATCGA
GGAGCGTCCTGCCCTATGGCCGTCCCTGCACATCAGCCCTGCAGGTTCCA
TGAAAGAAGCAGACGATAGTTGGTCCCATCCTTTGATGGAACCTAGGAAT
AAGGATTGGCCAAAAATCGTCATTCAGAGTGCGGTAGCAGGATCAATGCC
CAGGCTCCGCCTTGAAGCCTCCTGGTGGATAAATAACTCTAAGGGGCAAG
TGCAGATCGTGGTCTTGATTGGTGTGCGCAAAGATAGCGACTACTGCGAT
GTCTACCTCACGCACGACTCGATGAGCGTGCGCAAGGCGCACAACGCCGG
ACGTAACCACCTCAGAAACGTGCTGGAATACTACCAACAAATCGGACAAG
AAAAGGCCCAATCGGTCATCGATTCCATCACCTCGTCCTACGCCGCCGAA
GGCCAGGCTGTCCCGAATCCCGCAATGGCTCCCCCGGGGGCTTACCCTCC
TCCATTTGGCTTCCCTGGCCGACCAGGTCAACTCCCTCCACCTCCCTTTG
GAATGCCTCCTCTGGGCGCACCCGGCGCACCGGGCATGCCTCCTCCCCCC
GGAGCAAGAGGTCTCCCCTTTCCACCTCCCTTCCCCGGTCCAGCAGGCGC
CGCCCCTCCTGCCGGTCTCCCCCCTCTCCCCAACATGCCCCCCGGTGCCC
AGGGCTTCCCTCCTCCGCCTGGCGGATTCCCTCCGAACTTCCCGACCCCT
CCCCTGGTGCTGCTGCTGCCGGGTTCCCCCCCATCCCTCCCCCAGGTCAA
GCTCCAGCAGGATACAGCCCCAGTCCTACGCCCGGTATAGATGCCTAGGC
AGAATGCGGCTCGCATGGCATTTAGGCGAGAGATCACCTCCCAGTTAAGG
ATCATGAGTCTCGGCATCGAGGAGCGTCCTGCCCTATGGCCGTCCCTGCA
CATCAGCCCTGCAGGTTCCATGAAAGAAGCAGACGATAGTTGGTCCCATC
CTTTGATGGAACCTAGGAATAAGGATTGGCCAAAAATCGTCATTCAGAGT
GCGGTAGCAGGATCAATGCCCAGGCTCCGCCTTGAAGCCTCCTGGTGGAT
AAATAACTCTAAGGGGCAAGTGCAGATCGTGGTCTTGATTGGTGTGCGCA
AAGATAGCGACTACTGCGATGTCTACCTCACGCACGACTCGATGAGCGTG
CGCAAGGCGCACAACGCCGGACGTAACCACCTCAGAAACGTGCTGGAATA
CTACCAACAAATCGGACAAGAAAAGGCCCAATCGGTCATCGATTCCATCA
CCTCGTCCTACGCCGCCGAAGGCCAGGCTGTCCCGAATCCCGCAATGGCT
CCCCCGGGGGCTTACCCTCCTCCATTTGGCTTCCCTGGCCGACCAGGTCA
ACTCCCTCCACCTCCCTTTGGAATGCCTCCTCTGGGCGCACCCGGCGCAC
CGGGCATGCCTCCTCCCCCCGGAGCAAGAGGTCTCCCCTTTCCACCTCCC
TTCCCCGGTCCAGCAGGCGCCGCCCCTCCTGCCGGTCTCCCCCCTCTCCC
CAACATGCCCCCCGGTGCCCAGGGCTTCCCTCCTCCGCCTGGCGGATTCC
CTCCGAACTTCCCGACCCCTCCCCTGGTGCTGCTGCTGCCGGGTTCCCCC
CCATCCCTCCCCCAGGTCAAGCTCCAGCAGGATACAGCCCCAGTCCTACG
CCCGGTATAGATGCCTAGGCAGAATGCGGCTCGCATGGCATTTAGGCGAG
AGATCACCTCCCAGTTAAGGATCATGAGTCTCGGCATCGAGGAGCGTCCT
GCCCTATGGCCGTCCCTGCACATCAGCCCTGCAGGTTCCATGAAAGAAGC
AGACGATAGTTGGTCCCATCCTTTGATGGAACCTAGGAATAAGGATTGGC
CAAAAATCGTCATTCAGAGTGCGGTAGCAGGATCAATGCCCAGGCTCCGC
CTTGAAGCCTCCTGGTGGATAAATAACTCTAAGGGGCAAGTGCAGATCGT
GGTCTTGATTGGTGTGCGCAAAGATAGCGACTACTGCGATGTCTACCTCA
CGCACGACTCGATGAGCGTGCGCAAGGCGCACAACGCCGGACGTAACCAC
CTCAGAAACGTGCTGGAATACTACCAACAAATCGGACAAGAAAAGGCCCA
ATCGGTCATCGATTCCATCACCTCGTCCTACGCCGCCGAAGGCCAGGCTG
TCCCGAATCCCGCAATGGCTCCCCCGGGGGCTTACCCTCCTCCATTTGGC
TTCCCTGGCCGACCAGGTCAACTCCCTCCACCTCCCTTTGGAATGCCTCC
TCTGGGCGCACCCGGCGCACCGGGCATGCCTCCTCCCCCCGGAGCAAGAG
GTCTCCCCTTTCCACCTCCCTTCCCCGGTCCAGCAGGCGCCGCCCCTCCT
GCCGGTCTCCCCCCTCTCCCCAACATGCCCCCCGGTGCCCAGGGCTTCCC
TCCTCCGCCTGGCGGATTCCCTCCGAACTTCCCGACCCCTCCCCTGGTGC
TGCTGCTGCCGGGTTCCCCCCCATCCCTCCCCCAGGTCAAGCTCCAGCAG
GATACAGCCCCAGTCCTACGCCCGGTATAGATGCCTAGGCAGAATGCGGC
TCGCATGGCATTTAGGCGAGAGATCACCTCCCAGTTAAGGATCATGAGTC
TCGGCATCGAGGAGCGTCCTGCCCTATGGCCGTCCCTGCACATCAGCCCT
GCAGGTTCCATGAAAGAAGCAGACGATAGTTGGTCCCATCCTTTGATGGA
ACCTAGGAATAAGGATTGGCCAAAAATCGTCATTCAGAGTGCGGTAGCAG
GATCAATGCCCAGGCTCCGCCTTGAAGCCTCCTGGTGGATAAATAACTCT
AAGGGGCAAGTGCAGATCGTGGTCTTGATTGGTGTGCGCAAAGATAGCGA
CTACTGCGATGTCTACCTCACGCACGACTCGATGAGCGTGCGCAAGGCGC
ACAACGCCGGACGTAACCACCTCAGAAACGTGCTGGAATACTACCAACAA
ATCGGACAAGAAAAGGCCCAATCGGTCATCGATTCCATCACCTCGTCCTA
CGCCGCCGAAGGCCAGGCTGTCCCGAATCCCGCAATGGCTCCCCCGGGGG
CTTACCCTCCTCCATTTGGCTTCCCTGGCCGACCAGGTCAACTCCCTCCA
CCTCCCTTTGGAATGCCTCCTCTGGGCGCACCCGGCGCACCGGGCATGCC
TCCTCCCCCCGGAGCAAGAGGTCTCCCCTTTCCACCTCCCTTCCCCGGTC
CAGCAGGCGCCGCCCCTCCTGCCGGTCTCCCCCCTCTCCCCAACATGCCC
CCCGGTGCCCAGGGCTTCCCTCCTCCGCCTGGCGGATTCCCTCCGAACTT
CCCGACCCCTCCCCTGGTGCTGCTGCTGCCGGGTTCCCCCCCATCCCTCC
CCCAGGTCAAGCTCCAGCAGGATACAGCCCCAGTCCTACGCCCGGTATAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005634nucleus
GO:0005685U1 snRNP
Vocabulary: Biological Process
TermDefinition
GO:0000387spliceosomal snRNP assembly
GO:0000398mRNA splicing, via spliceosome
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0008270zinc ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_38455CAN33_38455Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_38455-T1CAN33_38455-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_38455-T1.exon1CAN33_38455-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_38455-T1.exon2CAN33_38455-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_38455-T1.exon3CAN33_38455-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_38455-T1.exon4CAN33_38455-T1.exon4Aspergillus niger FDAARGOS_311exon
CAN33_38455-T1.exon5CAN33_38455-T1.exon5Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_38455-T1.cdsCAN33_38455-T1.cdsAspergillus niger FDAARGOS_311CDS


Properties
Property NameValue
NoteEggNog:ENOG41
DBxrefInterPro:IPR036236
DBxrefInterPro:IPR000690
DBxrefInterPro:IPR017340
DBxrefInterPro:IPR013085
DBxrefInterPro:IPR003604
DBxrefPFAM:PF06220
ProductU1 zinc finger family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000017.1supercontigNKJJ01000017.1:1459102..1461307 +
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