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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000017.1:1917019..1918202- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_39220-T1 ID=CAN33_39220-T1|Name=CAN33_39220-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1184bp|location=Sequence derived from alignment at NKJJ01000017.1:1917019..1918202- (Aspergillus niger FDAARGOS_311)
ATGCCTGAGCTAGCGGAAGTCTCGCGTATAGTCCATTTCCTTCGTCAACA
TCTTGTCGGCAAAACGCTTTCCAAGGTGTCAGTGCAAAACGATGACATTA
TCTACGGCAAAGCCGGCACTACTGCTGCCGAGTTTCAGAAGGCAATGGAA
GGGAAGAAAGTTACTGGTGCCGGACAGCAGGGCAAGTACTTCTGGATTGC
TATGTCATCACCACCCCATGCGGTTATGCATTTCGGTATGGCGGGCTGGC
TGAAAATCCGGGATGCCGACACCTATTACTACCGGACAGACAAACCTGGA
GATAAGGAGTGGCCGCCAAAATACTGGAAATTCTTGCTCGAAACCGAGGG
AGATCCAAAGACAGAAGCTGCTTTTGTTGACTTTCGCCGACTGGGCAGAA
TACGCCTGGTAGACTGTCCCGCGGAGGAAATCCGTAACTACAGCCCTCTG
AAAGAGAATGGCCCAGATCCTGTCGCCGATAAAGACATTGTGTCGGAGGA
GTGGCTAGCAAAGAAGCTCCGAAGCAAGAAGGTACCTGTGAAGGCGCTGC
TCCTTGATCAGGCGAATATCAGCGGAATAGGCAACTGGATGGGGTATGTT
CCTTAAGTCTCCCACCATGACTAATTATATCTAGCTGACTGCTTTCTAGC
GATGAGATCCTCTACCATGCTAAAATACACCCTGAGCAATACAGCAACAC
CTTGAATGACGACCAGATTAGAGAGCTGCACTCAGCGATACATTATATCT
GTTCCACCTCCGTAGAGCTTCTAGCAGATTCGGAGAAATTTCCAGCTGAC
TGGCTGTTCAAACATCGGTGGAGTAAAGGCAAGAAGAACACGCCATCTGT
GCTGCCAAACGGAGAAAAGATTACCTTTCTCACGGTAGGGGGCAGAACCA
GCGCAGTGGTTCCAAGTGTGCAGAAAAAGACTGGGCCAGTAGCCAAGGAC
GTCAGCAGTGAAGACGCCAGCAATGCGCCGGCAAACTCGAAGCGAAAGCG
GGCTTCAGTGAAAAAGGAGGAGAGCGAGCCGGAAGCTAGCGAAGAGGATA
CGAAGCCCAAGAAGACCGGGCCCAAAAGGCAAAGCAGAACTTCTGTCAAG
AAGGAAGACATCGATGAGACGGAGACTAAGCCGGTAGAAGAACAGCAAAC
TACCAGGAGACGCTCGGGCCGACTTCGAAAGTAG back to topCoding sequence (CDS) from alignment at NKJJ01000017.1:1917019..1918202- >CAN33_39220-T1 ID=CAN33_39220-T1|Name=CAN33_39220-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2256bp|location=Sequence derived from alignment at NKJJ01000017.1:1917019..1918202- (Aspergillus niger FDAARGOS_311)
CGATGAGATCCTCTACCATGCTAAAATACACCCTGAGCAATACAGCAACA
CCTTGAATGACGACCAGATTAGAGAGCTGCACTCAGCGATACATTATATC
TGTTCCACCTCCGTAGAGCTTCTAGCAGATTCGGAGAAATTTCCAGCTGA
CTGGCTGTTCAAACATCGGTGGAGTAAAGGCAAGAAGAACACGCCATCTG
TGCTGCCAAACGGAGAAAAGATTACCTTTCTCACGGTAGGGGGCAGAACC
AGCGCAGTGGTTCCAAGTGTGCAGAAAAAGACTGGGCCAGTAGCCAAGGA
CGTCAGCAGTGAAGACGCCAGCAATGCGCCGGCAAACTCGAAGCGAAAGC
GGGCTTCAGTGAAAAAGGAGGAGAGCGAGCCGGAAGCTAGCGAAGAGGAT
ACGAAGCCCAAGAAGACCGGGCCCAAAAGGCAAAGCAGAACTTCTGTCAA
GAAGGAAGACATCGATGAGACGGAGACTAAGCCGGTAGAAGAACAGCAAA
CTACCAGGAGACGCTCGGGCCGACTTCGAAAGTAGATGCCTGAGCTAGCG
GAAGTCTCGCGTATAGTCCATTTCCTTCGTCAACATCTTGTCGGCAAAAC
GCTTTCCAAGGTGTCAGTGCAAAACGATGACATTATCTACGGCAAAGCCG
GCACTACTGCTGCCGAGTTTCAGAAGGCAATGGAAGGGAAGAAAGTTACT
GGTGCCGGACAGCAGGGCAAGTACTTCTGGATTGCTATGTCATCACCACC
CCATGCGGTTATGCATTTCGGTATGGCGGGCTGGCTGAAAATCCGGGATG
CCGACACCTATTACTACCGGACAGACAAACCTGGAGATAAGGAGTGGCCG
CCAAAATACTGGAAATTCTTGCTCGAAACCGAGGGAGATCCAAAGACAGA
AGCTGCTTTTGTTGACTTTCGCCGACTGGGCAGAATACGCCTGGTAGACT
GTCCCGCGGAGGAAATCCGTAACTACAGCCCTCTGAAAGAGAATGGCCCA
GATCCTGTCGCCGATAAAGACATTGTGTCGGAGGAGTGGCTAGCAAAGAA
GCTCCGAAGCAAGAAGGTACCTGTGAAGGCGCTGCTCCTTGATCAGGCGA
ATATCAGCGGAATAGGCAACTGGATGGGCGATGAGATCCTCTACCATGCT
AAAATACACCCTGAGCAATACAGCAACACCTTGAATGACGACCAGATTAG
AGAGCTGCACTCAGCGATACATTATATCTGTTCCACCTCCGTAGAGCTTC
TAGCAGATTCGGAGAAATTTCCAGCTGACTGGCTGTTCAAACATCGGTGG
AGTAAAGGCAAGAAGAACACGCCATCTGTGCTGCCAAACGGAGAAAAGAT
TACCTTTCTCACGGTAGGGGGCAGAACCAGCGCAGTGGTTCCAAGTGTGC
AGAAAAAGACTGGGCCAGTAGCCAAGGACGTCAGCAGTGAAGACGCCAGC
AATGCGCCGGCAAACTCGAAGCGAAAGCGGGCTTCAGTGAAAAAGGAGGA
GAGCGAGCCGGAAGCTAGCGAAGAGGATACGAAGCCCAAGAAGACCGGGC
CCAAAAGGCAAAGCAGAACTTCTGTCAAGAAGGAAGACATCGATGAGACG
GAGACTAAGCCGGTAGAAGAACAGCAAACTACCAGGAGACGCTCGGGCCG
ACTTCGAAAGTAGATGCCTGAGCTAGCGGAAGTCTCGCGTATAGTCCATT
TCCTTCGTCAACATCTTGTCGGCAAAACGCTTTCCAAGGTGTCAGTGCAA
AACGATGACATTATCTACGGCAAAGCCGGCACTACTGCTGCCGAGTTTCA
GAAGGCAATGGAAGGGAAGAAAGTTACTGGTGCCGGACAGCAGGGCAAGT
ACTTCTGGATTGCTATGTCATCACCACCCCATGCGGTTATGCATTTCGGT
ATGGCGGGCTGGCTGAAAATCCGGGATGCCGACACCTATTACTACCGGAC
AGACAAACCTGGAGATAAGGAGTGGCCGCCAAAATACTGGAAATTCTTGC
TCGAAACCGAGGGAGATCCAAAGACAGAAGCTGCTTTTGTTGACTTTCGC
CGACTGGGCAGAATACGCCTGGTAGACTGTCCCGCGGAGGAAATCCGTAA
CTACAGCCCTCTGAAAGAGAATGGCCCAGATCCTGTCGCCGATAAAGACA
TTGTGTCGGAGGAGTGGCTAGCAAAGAAGCTCCGAAGCAAGAAGGTACCT
GTGAAGGCGCTGCTCCTTGATCAGGCGAATATCAGCGGAATAGGCAACTG
GATGGG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006289 | nucleotide-excision repair |
| GO:0006284 | base-excision repair |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0008270 | zinc ion binding |
| GO:0003906 | DNA-(apurinic or apyrimidinic site) endonuclease activity |
| GO:0003684 | damaged DNA binding |
| GO:0016799 | hydrolase activity, hydrolyzing N-glycosyl compounds |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR010979 |
| DBxref | InterPro:IPR035937 |
| DBxref | InterPro:IPR015886 |
| DBxref | InterPro:IPR012319 |
| DBxref | PFAM:PF06831 |
| DBxref | PFAM:PF01149 |
| Product | Formamidopyrimidine-DNA glycosylase N-terminal domain family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000017.1 | supercontig | NKJJ01000017.1:1917019..1918202 - |
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