You are here

Home

CAN33_40060-T1, CAN33_40060-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_40060-T1
Unique NameCAN33_40060-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000017.1:2418923..2420360+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_40060-T1 ID=CAN33_40060-T1|Name=CAN33_40060-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1438bp|location=Sequence derived from alignment at NKJJ01000017.1:2418923..2420360+ (Aspergillus niger FDAARGOS_311)
ATGCCTTTCCCTCCACGCGAGAAGGGGCGGATGGCAAAATCTGGAAGGTC
AGAAGAGGAATTTGTTCTATTCCTCCAGGGGGTATGTCTCGCACGTGGTA
CATCTCATACACGCGGCCTTGTCTAACCATGGGTGCAGATACCGGCGCAC
TGTCGTTGGCAAGAGCTCAAGGACCTAGTCCGCCAGACAGCCTTACATAT
CCGTCAAGCAGTGGTCTACGATGACCAGCATGGATTCCCAACCGGTCTTG
GACAGATCATCGTGAAGAACGAAGACGAAGCATGGAGGACCTACCGTGCG
TCATGAAACTCAGATGGTTAGAAATTAGCTGACAGGGTGCTTCTAGATAG
GCTTTCTACCAACGGCTGGGAAGGCCAGAGCCTTGTTGTCACTTTAGCAC
GAACCAGCTCACCTACACGACCAATTGCTGGGCCCACGAAGAGTCCAACC
TGCGTAATTCCGCCCAACTATGTACCAGGCTACTCAACTCCGCCACGATC
AACACAAAACATGGCAGTGCCTCCGTCTCCCATTTCCCCCGAGTAAGTAC
AGGAAGTGGCTCCCCTTCTTCCTCAGGCGACAACTGACAACTCATAGACC
TATCTTGTCTGCCAGTCCAAGCTGCCCGACATATCCAGCCACTGATTACG
GCCCCATGGTCAATCCCCTAGCAATGCCTCAACAGCCTTTCATGCCTTTC
CCCACAGACCCAGTCACACAACAGCCCATATCAGGCATCCCGCCCTCGCC
CGCTCCTCTCCGCCACTCCTTCGGCGACGCTTTCGCTATTCCCGTCTTCC
CCGCATATCCTTTTCCGACCATGCCGCCGTTTCCTGATGCCCCAGCACAT
GGCGGTTTTAGTCTACCCGGACGTCGGGCCCACATGTCCGGCAAAGCTTC
CTACGGCTACAATCCGGCGTTCGCGCCGCAGATCTACCATTCCGGGGGCC
CAGGTCCCCGTTCTTCCCCACGACGAACTATATTCGTGCAGAATCTCAGT
CCCACCACGACCGACAAGCTCCTTCGCGCCTTCATAGAAGAAAGTGGCGC
CACAGTGGAGCAATCCGAGGTGTCCACGGATCCCGACACCGGCCGCTGTA
AAGGCTTCGCACGGGTAACCCTACGCACAGCAGATGAAGCCAAGCGTGTT
GTAGCGCAGTACAACGGCATCAACTTTATGGACGCGAAAATTCGCGTCAA
GATCGACCGGAGTCTCCATCTCGCTTACAGCCTGACCCGCGAGAGACATG
CCGGTTCGGCACCATCAGCTAACGCGAACAGTCCGGTCGCAAAGAACCAA
GGACCATATGGTGCTGGCAACAGCCCGAGGTCATCATCGCTGTCTTCATC
GACGTCAACGTCGTCGAAATCGGGCGACCACTGTGGACCCCTAGTCGTCA
ATGGGTCCAACACGGGAACCAAGGCAGTGGCTACTTAG
back to top

Coding sequence (CDS) from alignment at NKJJ01000017.1:2418923..2420360+

>CAN33_40060-T1 ID=CAN33_40060-T1|Name=CAN33_40060-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=5100bp|location=Sequence derived from alignment at NKJJ01000017.1:2418923..2420360+ (Aspergillus niger FDAARGOS_311)
ATGCCTTTCCCTCCACGCGAGAAGGGGCGGATGGCAAAATCTGGAAGGTC
AGAAGAGGAATTTGTTCTATTCCTCCAGGGGATACCGGCGCACTGTCGTT
GGCAAGAGCTCAAGGACCTAGTCCGCCAGACAGCCTTACATATCCGTCAA
GCAGTGGTCTACGATGACCAGCATGGATTCCCAACCGGTCTTGGACAGAT
CATCGTGAAGAACGAAGACGAAGCATGGAGGACCTACCATAGGCTTTCTA
CCAACGGCTGGGAAGGCCAGAGCCTTGTTGTCACTTTAGCACGAACCAGC
TCACCTACACGACCAATTGCTGGGCCCACGAAGAGTCCAACCTGCGTAAT
TCCGCCCAACTATGTACCAGGCTACTCAACTCCGCCACGATCAACACAAA
ACATGGCAGTGCCTCCGTCTCCCATTTCCCCCGAACCTATCTTGTCTGCC
AGTCCAAGCTGCCCGACATATCCAGCCACTGATTACGGCCCCATGGTCAA
TCCCCTAGCAATGCCTCAACAGCCTTTCATGCCTTTCCCCACAGACCCAG
TCACACAACAGCCCATATCAGGCATCCCGCCCTCGCCCGCTCCTCTCCGC
CACTCCTTCGGCGACGCTTTCGCTATTCCCGTCTTCCCCGCATATCCTTT
TCCGACCATGCCGCCGTTTCCTGATGCCCCAGCACATGGCGGTTTTAGTC
TACCCGGACGTCGGGCCCACATGTCCGGCAAAGCTTCCTACGGCTACAAT
CCGGCGTTCGCGCCGCAGATCTACCATTCCGGGGGCCCAGGTCCCCGTTC
TTCCCCACGACGAACTATATTCGTGCAGAATCTCAGTCCCACCACGACCG
ACAAGCTCCTTCGCGCCTTCATAGAAGAAAGTGGCGCCACAGTGGAGCAA
TCCGAGGTGTCCACGGATCCCGACACCGGCCGCTGTAAAGGCTTCGCACG
GGTAACCCTACGCACAGCAGATGAAGCCAAGCGTGTTGTAGCGCAGTACA
ACGGCATCAACTTTATGGACGCGAAAATTCGCGTCAAGATCGACCGGAGT
CTCCATCTCGCTTACAGCCTGACCCGCGAGAGACATGCCGGTTCGGCACC
ATCAGCTAACGCGAACAGTCCGGTCGCAAAGAACCAAGGACCATATGGTG
CTGGCAACAGCCCGAGGTCATCATCGCTGTCTTCATCGACGTCAACGTCG
TCGAAATCGGGCGACCACTGTGGACCCCTAGTCGTCAATGGGTCCAACAC
GGGAACCAAGGCAGTGGCTACTTAGATGCCTTTCCCTCCACGCGAGAAGG
GGCGGATGGCAAAATCTGGAAGGTCAGAAGAGGAATTTGTTCTATTCCTC
CAGGGGATACCGGCGCACTGTCGTTGGCAAGAGCTCAAGGACCTAGTCCG
CCAGACAGCCTTACATATCCGTCAAGCAGTGGTCTACGATGACCAGCATG
GATTCCCAACCGGTCTTGGACAGATCATCGTGAAGAACGAAGACGAAGCA
TGGAGGACCTACCATAGGCTTTCTACCAACGGCTGGGAAGGCCAGAGCCT
TGTTGTCACTTTAGCACGAACCAGCTCACCTACACGACCAATTGCTGGGC
CCACGAAGAGTCCAACCTGCGTAATTCCGCCCAACTATGTACCAGGCTAC
TCAACTCCGCCACGATCAACACAAAACATGGCAGTGCCTCCGTCTCCCAT
TTCCCCCGAACCTATCTTGTCTGCCAGTCCAAGCTGCCCGACATATCCAG
CCACTGATTACGGCCCCATGGTCAATCCCCTAGCAATGCCTCAACAGCCT
TTCATGCCTTTCCCCACAGACCCAGTCACACAACAGCCCATATCAGGCAT
CCCGCCCTCGCCCGCTCCTCTCCGCCACTCCTTCGGCGACGCTTTCGCTA
TTCCCGTCTTCCCCGCATATCCTTTTCCGACCATGCCGCCGTTTCCTGAT
GCCCCAGCACATGGCGGTTTTAGTCTACCCGGACGTCGGGCCCACATGTC
CGGCAAAGCTTCCTACGGCTACAATCCGGCGTTCGCGCCGCAGATCTACC
ATTCCGGGGGCCCAGGTCCCCGTTCTTCCCCACGACGAACTATATTCGTG
CAGAATCTCAGTCCCACCACGACCGACAAGCTCCTTCGCGCCTTCATAGA
AGAAAGTGGCGCCACAGTGGAGCAATCCGAGGTGTCCACGGATCCCGACA
CCGGCCGCTGTAAAGGCTTCGCACGGGTAACCCTACGCACAGCAGATGAA
GCCAAGCGTGTTGTAGCGCAGTACAACGGCATCAACTTTATGGACGCGAA
AATTCGCGTCAAGATCGACCGGAGTCTCCATCTCGCTTACAGCCTGACCC
GCGAGAGACATGCCGGTTCGGCACCATCAGCTAACGCGAACAGTCCGGTC
GCAAAGAACCAAGGACCATATGGTGCTGGCAACAGCCCGAGGTCATCATC
GCTGTCTTCATCGACGTCAACGTCGTCGAAATCGGGCGACCACTGTGGAC
CCCTAGTCGTCAATGGGTCCAACACGGGAACCAAGGCAGTGGCTACTTAG
ATGCCTTTCCCTCCACGCGAGAAGGGGCGGATGGCAAAATCTGGAAGGTC
AGAAGAGGAATTTGTTCTATTCCTCCAGGGGATACCGGCGCACTGTCGTT
GGCAAGAGCTCAAGGACCTAGTCCGCCAGACAGCCTTACATATCCGTCAA
GCAGTGGTCTACGATGACCAGCATGGATTCCCAACCGGTCTTGGACAGAT
CATCGTGAAGAACGAAGACGAAGCATGGAGGACCTACCATAGGCTTTCTA
CCAACGGCTGGGAAGGCCAGAGCCTTGTTGTCACTTTAGCACGAACCAGC
TCACCTACACGACCAATTGCTGGGCCCACGAAGAGTCCAACCTGCGTAAT
TCCGCCCAACTATGTACCAGGCTACTCAACTCCGCCACGATCAACACAAA
ACATGGCAGTGCCTCCGTCTCCCATTTCCCCCGAACCTATCTTGTCTGCC
AGTCCAAGCTGCCCGACATATCCAGCCACTGATTACGGCCCCATGGTCAA
TCCCCTAGCAATGCCTCAACAGCCTTTCATGCCTTTCCCCACAGACCCAG
TCACACAACAGCCCATATCAGGCATCCCGCCCTCGCCCGCTCCTCTCCGC
CACTCCTTCGGCGACGCTTTCGCTATTCCCGTCTTCCCCGCATATCCTTT
TCCGACCATGCCGCCGTTTCCTGATGCCCCAGCACATGGCGGTTTTAGTC
TACCCGGACGTCGGGCCCACATGTCCGGCAAAGCTTCCTACGGCTACAAT
CCGGCGTTCGCGCCGCAGATCTACCATTCCGGGGGCCCAGGTCCCCGTTC
TTCCCCACGACGAACTATATTCGTGCAGAATCTCAGTCCCACCACGACCG
ACAAGCTCCTTCGCGCCTTCATAGAAGAAAGTGGCGCCACAGTGGAGCAA
TCCGAGGTGTCCACGGATCCCGACACCGGCCGCTGTAAAGGCTTCGCACG
GGTAACCCTACGCACAGCAGATGAAGCCAAGCGTGTTGTAGCGCAGTACA
ACGGCATCAACTTTATGGACGCGAAAATTCGCGTCAAGATCGACCGGAGT
CTCCATCTCGCTTACAGCCTGACCCGCGAGAGACATGCCGGTTCGGCACC
ATCAGCTAACGCGAACAGTCCGGTCGCAAAGAACCAAGGACCATATGGTG
CTGGCAACAGCCCGAGGTCATCATCGCTGTCTTCATCGACGTCAACGTCG
TCGAAATCGGGCGACCACTGTGGACCCCTAGTCGTCAATGGGTCCAACAC
GGGAACCAAGGCAGTGGCTACTTAGATGCCTTTCCCTCCACGCGAGAAGG
GGCGGATGGCAAAATCTGGAAGGTCAGAAGAGGAATTTGTTCTATTCCTC
CAGGGGATACCGGCGCACTGTCGTTGGCAAGAGCTCAAGGACCTAGTCCG
CCAGACAGCCTTACATATCCGTCAAGCAGTGGTCTACGATGACCAGCATG
GATTCCCAACCGGTCTTGGACAGATCATCGTGAAGAACGAAGACGAAGCA
TGGAGGACCTACCATAGGCTTTCTACCAACGGCTGGGAAGGCCAGAGCCT
TGTTGTCACTTTAGCACGAACCAGCTCACCTACACGACCAATTGCTGGGC
CCACGAAGAGTCCAACCTGCGTAATTCCGCCCAACTATGTACCAGGCTAC
TCAACTCCGCCACGATCAACACAAAACATGGCAGTGCCTCCGTCTCCCAT
TTCCCCCGAACCTATCTTGTCTGCCAGTCCAAGCTGCCCGACATATCCAG
CCACTGATTACGGCCCCATGGTCAATCCCCTAGCAATGCCTCAACAGCCT
TTCATGCCTTTCCCCACAGACCCAGTCACACAACAGCCCATATCAGGCAT
CCCGCCCTCGCCCGCTCCTCTCCGCCACTCCTTCGGCGACGCTTTCGCTA
TTCCCGTCTTCCCCGCATATCCTTTTCCGACCATGCCGCCGTTTCCTGAT
GCCCCAGCACATGGCGGTTTTAGTCTACCCGGACGTCGGGCCCACATGTC
CGGCAAAGCTTCCTACGGCTACAATCCGGCGTTCGCGCCGCAGATCTACC
ATTCCGGGGGCCCAGGTCCCCGTTCTTCCCCACGACGAACTATATTCGTG
CAGAATCTCAGTCCCACCACGACCGACAAGCTCCTTCGCGCCTTCATAGA
AGAAAGTGGCGCCACAGTGGAGCAATCCGAGGTGTCCACGGATCCCGACA
CCGGCCGCTGTAAAGGCTTCGCACGGGTAACCCTACGCACAGCAGATGAA
GCCAAGCGTGTTGTAGCGCAGTACAACGGCATCAACTTTATGGACGCGAA
AATTCGCGTCAAGATCGACCGGAGTCTCCATCTCGCTTACAGCCTGACCC
GCGAGAGACATGCCGGTTCGGCACCATCAGCTAACGCGAACAGTCCGGTC
GCAAAGAACCAAGGACCATATGGTGCTGGCAACAGCCCGAGGTCATCATC
GCTGTCTTCATCGACGTCAACGTCGTCGAAATCGGGCGACCACTGTGGAC
CCCTAGTCGTCAATGGGTCCAACACGGGAACCAAGGCAGTGGCTACTTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_40060CAN33_40060Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_40060-T1.exon1CAN33_40060-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_40060-T1.exon2CAN33_40060-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_40060-T1.exon3CAN33_40060-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_40060-T1.exon4CAN33_40060-T1.exon4Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_40060-T1.cdsCAN33_40060-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_40060-T1CAN33_40060-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteEggNog:ENOG41
DBxrefInterPro:IPR035979
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR000504
DBxrefPFAM:PF00076
ProductRNA recognition motif family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000017.1supercontigNKJJ01000017.1:2418923..2420360 +
Powered by Drupal