You are here

Home

CAN33_40445-T1, CAN33_40445-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_40445-T1
Unique NameCAN33_40445-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000017.1:2719759..2720176+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_40445-T1 ID=CAN33_40445-T1|Name=CAN33_40445-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=418bp|location=Sequence derived from alignment at NKJJ01000017.1:2719759..2720176+ (Aspergillus niger FDAARGOS_311)
ATGACCTCCGGTGCTGAGTCCGGTCCCGACTCCAAGTCTGCTGGCGCTGG
CACCGGCGCCTCTGCTGTCTCCTCCGTCAACCGCCCTTCCTCTCCTACTC
CTCCTGGTGGTCCCCGGGCTGCTATGCGTCGCCGCGCGGCCGCTGACCAC
AAGGAGTCCCTCCGCAATGCCAGACCCAGCTCGACTCGCGCCGCCGGTGC
TGGTGGCTCCTCCGGCACGATGCTCAAGCTCTACACTGACGAGAGCCCCG
GTCTGAGGGTTGACCCCGTTGTTGTCCTGGTTCTCAGTCTGGGCTTCATT
TTCTCCGTCGTTGGTCTCCACGGTAAGTGTGCTTTCCGGGTTGTCTTCTG
GGTGGTGAAGTGGCCTCTAACGCGCATATCCAGTCATTGCCAAGATCACC
CGCAAGTTCTCCTCATAA
back to top

Coding sequence (CDS) from alignment at NKJJ01000017.1:2719759..2720176+

>CAN33_40445-T1 ID=CAN33_40445-T1|Name=CAN33_40445-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=714bp|location=Sequence derived from alignment at NKJJ01000017.1:2719759..2720176+ (Aspergillus niger FDAARGOS_311)
ATGACCTCCGGTGCTGAGTCCGGTCCCGACTCCAAGTCTGCTGGCGCTGG
CACCGGCGCCTCTGCTGTCTCCTCCGTCAACCGCCCTTCCTCTCCTACTC
CTCCTGGTGGTCCCCGGGCTGCTATGCGTCGCCGCGCGGCCGCTGACCAC
AAGGAGTCCCTCCGCAATGCCAGACCCAGCTCGACTCGCGCCGCCGGTGC
TGGTGGCTCCTCCGGCACGATGCTCAAGCTCTACACTGACGAGAGCCCCG
GTCTGAGGGTTGACCCCGTTGTTGTCCTGGTTCTCAGTCTGGGCTTCATT
TTCTCCGTCGTTGGTCTCCACGTCATTGCCAAGATCACCCGCAAGTTCTC
CTCATAAATGACCTCCGGTGCTGAGTCCGGTCCCGACTCCAAGTCTGCTG
GCGCTGGCACCGGCGCCTCTGCTGTCTCCTCCGTCAACCGCCCTTCCTCT
CCTACTCCTCCTGGTGGTCCCCGGGCTGCTATGCGTCGCCGCGCGGCCGC
TGACCACAAGGAGTCCCTCCGCAATGCCAGACCCAGCTCGACTCGCGCCG
CCGGTGCTGGTGGCTCCTCCGGCACGATGCTCAAGCTCTACACTGACGAG
AGCCCCGGTCTGAGGGTTGACCCCGTTGTTGTCCTGGTTCTCAGTCTGGG
CTTCATTTTCTCCGTCGTTGGTCTCCACGTCATTGCCAAGATCACCCGCA
AGTTCTCCTCATAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005784Sec61 translocon complex
Vocabulary: Biological Process
TermDefinition
GO:0006886intracellular protein transport
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SBH1CAN33_40445Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_40445-T1.exon1CAN33_40445-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_40445-T1.exon2CAN33_40445-T1.exon2Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_40445-T1.cdsCAN33_40445-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_40445-T1CAN33_40445-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR016482
DBxrefInterPro:IPR030671
DBxrefPFAM:PF03911
ProductArf guanine nucleotide exchange factor sbh1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000017.1supercontigNKJJ01000017.1:2719759..2720176 +
Powered by Drupal