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CAN33_40550-T1, CAN33_40550-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_40550-T1
Unique NameCAN33_40550-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000017.1:2769747..2770529+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_40550-T1 ID=CAN33_40550-T1|Name=CAN33_40550-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=783bp|location=Sequence derived from alignment at NKJJ01000017.1:2769747..2770529+ (Aspergillus niger FDAARGOS_311)
ATGAAATCATCGCAAAGGACCGACGACTTGCACAACAGTCAACAACGTTT
CGCACGGAATATACGCAACGACTGAAGCCATTGCACGAGGCAGTTCTCAT
CGGATGGGAGAACATGGCTGACTGGGATCCTTAGGGCGTCTCACCGAGTA
CCAGGTCATTGGGCGTCACCTGCCCACCGAGGCTAACCCCACGCCCAAGC
TGTACCGCATGCGCATCTTCGCGCCCAACACTGTTGTCGCTAAGTCCCGG
TTCTGGTACTTCCTGACCCAGCTCCGCAAGGTCAAGAAGGCCAACGGTGA
GATCGTCAGCATCAATGTGGTATGTGTGGCCGTTATCAAGCGACAACTCG
GCAGTGTTGGCTGACGCCTGTCTTTTTTCCCCATCCAATAGATCAGCGAG
AAGCGCCCTACCAAGGTCAAGAACTTCGGTATCTGGCTCCGCTACGACTC
CCGCTCCGGCACCCACAACATGTACAAGGAGTTCCGTGAGATGAGCCGCA
CCGAGGCTGTTGAGGCTCTCTACCAGGACATGGCTGCCCGCCACCGTGCC
CGCTTCGGCTCCATCCACGTATGTTGAGATTCCTATCCTCTTTTGCTGAG
GAATATTGCGATCTAACTACGTTCCTACAGATCCTTAAGGTTGTTGAGAT
CGAGAACGCCGACAGCATCCGCCGCCCCTACATCAAGCAGCTCCTCTCCA
AGAACCTCAAGTTCCCCCTGCCCCACCGTGCTGCCCACGGCAAGAAGCTG
TTCGCTTACTCTCGTCCCACTACTTTCGCGTAA
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Coding sequence (CDS) from alignment at NKJJ01000017.1:2769747..2770529+

>CAN33_40550-T1 ID=CAN33_40550-T1|Name=CAN33_40550-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2244bp|location=Sequence derived from alignment at NKJJ01000017.1:2769747..2770529+ (Aspergillus niger FDAARGOS_311)
ATGAAATCATCGCAAAGGACCGACGACTTGCACAACAGTCAACAACGGCG
TCTCACCGAGTACCAGGTCATTGGGCGTCACCTGCCCACCGAGGCTAACC
CCACGCCCAAGCTGTACCGCATGCGCATCTTCGCGCCCAACACTGTTGTC
GCTAAGTCCCGGTTCTGGTACTTCCTGACCCAGCTCCGCAAGGTCAAGAA
GGCCAACGGTGAGATCGTCAGCATCAATGTGATCAGCGAGAAGCGCCCTA
CCAAGGTCAAGAACTTCGGTATCTGGCTCCGCTACGACTCCCGCTCCGGC
ACCCACAACATGTACAAGGAGTTCCGTGAGATGAGCCGCACCGAGGCTGT
TGAGGCTCTCTACCAGGACATGGCTGCCCGCCACCGTGCCCGCTTCGGCT
CCATCCACATCCTTAAGGTTGTTGAGATCGAGAACGCCGACAGCATCCGC
CGCCCCTACATCAAGCAGCTCCTCTCCAAGAACCTCAAGTTCCCCCTGCC
CCACCGTGCTGCCCACGGCAAGAAGCTGTTCGCTTACTCTCGTCCCACTA
CTTTCGCGTAAATGAAATCATCGCAAAGGACCGACGACTTGCACAACAGT
CAACAACGGCGTCTCACCGAGTACCAGGTCATTGGGCGTCACCTGCCCAC
CGAGGCTAACCCCACGCCCAAGCTGTACCGCATGCGCATCTTCGCGCCCA
ACACTGTTGTCGCTAAGTCCCGGTTCTGGTACTTCCTGACCCAGCTCCGC
AAGGTCAAGAAGGCCAACGGTGAGATCGTCAGCATCAATGTGATCAGCGA
GAAGCGCCCTACCAAGGTCAAGAACTTCGGTATCTGGCTCCGCTACGACT
CCCGCTCCGGCACCCACAACATGTACAAGGAGTTCCGTGAGATGAGCCGC
ACCGAGGCTGTTGAGGCTCTCTACCAGGACATGGCTGCCCGCCACCGTGC
CCGCTTCGGCTCCATCCACATCCTTAAGGTTGTTGAGATCGAGAACGCCG
ACAGCATCCGCCGCCCCTACATCAAGCAGCTCCTCTCCAAGAACCTCAAG
TTCCCCCTGCCCCACCGTGCTGCCCACGGCAAGAAGCTGTTCGCTTACTC
TCGTCCCACTACTTTCGCGTAAATGAAATCATCGCAAAGGACCGACGACT
TGCACAACAGTCAACAACGGCGTCTCACCGAGTACCAGGTCATTGGGCGT
CACCTGCCCACCGAGGCTAACCCCACGCCCAAGCTGTACCGCATGCGCAT
CTTCGCGCCCAACACTGTTGTCGCTAAGTCCCGGTTCTGGTACTTCCTGA
CCCAGCTCCGCAAGGTCAAGAAGGCCAACGGTGAGATCGTCAGCATCAAT
GTGATCAGCGAGAAGCGCCCTACCAAGGTCAAGAACTTCGGTATCTGGCT
CCGCTACGACTCCCGCTCCGGCACCCACAACATGTACAAGGAGTTCCGTG
AGATGAGCCGCACCGAGGCTGTTGAGGCTCTCTACCAGGACATGGCTGCC
CGCCACCGTGCCCGCTTCGGCTCCATCCACATCCTTAAGGTTGTTGAGAT
CGAGAACGCCGACAGCATCCGCCGCCCCTACATCAAGCAGCTCCTCTCCA
AGAACCTCAAGTTCCCCCTGCCCCACCGTGCTGCCCACGGCAAGAAGCTG
TTCGCTTACTCTCGTCCCACTACTTTCGCGTAAATGAAATCATCGCAAAG
GACCGACGACTTGCACAACAGTCAACAACGGCGTCTCACCGAGTACCAGG
TCATTGGGCGTCACCTGCCCACCGAGGCTAACCCCACGCCCAAGCTGTAC
CGCATGCGCATCTTCGCGCCCAACACTGTTGTCGCTAAGTCCCGGTTCTG
GTACTTCCTGACCCAGCTCCGCAAGGTCAAGAAGGCCAACGGTGAGATCG
TCAGCATCAATGTGATCAGCGAGAAGCGCCCTACCAAGGTCAAGAACTTC
GGTATCTGGCTCCGCTACGACTCCCGCTCCGGCACCCACAACATGTACAA
GGAGTTCCGTGAGATGAGCCGCACCGAGGCTGTTGAGGCTCTCTACCAGG
ACATGGCTGCCCGCCACCGTGCCCGCTTCGGCTCCATCCACATCCTTAAG
GTTGTTGAGATCGAGAACGCCGACAGCATCCGCCGCCCCTACATCAAGCA
GCTCCTCTCCAAGAACCTCAAGTTCCCCCTGCCCCACCGTGCTGCCCACG
GCAAGAAGCTGTTCGCTTACTCTCGTCCCACTACTTTCGCGTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPL20ACAN33_40550Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_40550-T1.exon1CAN33_40550-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_40550-T1.exon2CAN33_40550-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_40550-T1.exon3CAN33_40550-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_40550-T1.exon4CAN33_40550-T1.exon4Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_40550-T1.cdsCAN33_40550-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_40550-T1CAN33_40550-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR028877
DBxrefInterPro:IPR021138
DBxrefInterPro:IPR023573
DBxrefPFAM:PF01775
Product60S ribosomal protein L20A
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000017.1supercontigNKJJ01000017.1:2769747..2770529 +
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