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CAN33_41065-T1, CAN33_41065-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_41065-T1
Unique NameCAN33_41065-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000017.1:3102618..3103411+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_41065-T1 ID=CAN33_41065-T1|Name=CAN33_41065-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=794bp|location=Sequence derived from alignment at NKJJ01000017.1:3102618..3103411+ (Aspergillus niger FDAARGOS_311)
ATGACAACCCCCAAACCCCACATCGCACACACGCTCCTCTCGCGCGCGCA
CTCCCCCGACACAGCCTCGCAACTCTTCACCGAGCGCATAAAACAAAAGC
CTCTCTACGTGCGTCCCACGTCCCCAACGCCCGCCGACAACCGCTCGCGC
CGGCGCCTCCATCGCCTCCGCAAGAAAGAGTATTTCCTCCGCAAACAAAA
GCCGCAGCCTTTATCCGCGCGTCAGAAGCGCGCCTCGGGCCTCTACAACC
TCCCCAAGGAAGAATGCAAGTATGCGGTTTTCCAGGAGCTGCATGCCATG
TGGGTGCGGTATATGCAGGATATGCTAGACTTGGGGGCAAAGAAATTCAA
GCCGCCGATGACACCGTTGTCGCATGGGAGTAAGCTCTCCAGTGCGGATT
TTCATGGCGCGGAGGTGGAGGTTGTAAGGAGTCGGTGTGAGGGGAGGGTC
GGGGTTAAGGGGATTGTGGTTAGGGATACGAAGTTTACGTTTGTGGTTGT
TACGAGGGGGGATGAGGTTAAGAGTATGTTTTATTCTTTTTCTTGATGAG
GTTTGGTTTGTGTGTTGCTAATGTGGGTGTGAATCTAGCTATTCCGAAGG
AGCAGACTATTTTCCGGTTTAGTGTGCCTTTGCCTGAGGCGGATGATGCT
GATGGCGCGGCGGTGACTGGGGAGACGAGCGCTGATTCTGCTAAGAAGGA
GCTCGTGTTTGAGCTCCATGGCAGTCAGTTCCAGAATCGTCCGGTTGACA
GGGCGAACAAGAAATTCAAATGGCGGAATGTGGATTATATCTAA
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Coding sequence (CDS) from alignment at NKJJ01000017.1:3102618..3103411+

>CAN33_41065-T1 ID=CAN33_41065-T1|Name=CAN33_41065-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1458bp|location=Sequence derived from alignment at NKJJ01000017.1:3102618..3103411+ (Aspergillus niger FDAARGOS_311)
ATGACAACCCCCAAACCCCACATCGCACACACGCTCCTCTCGCGCGCGCA
CTCCCCCGACACAGCCTCGCAACTCTTCACCGAGCGCATAAAACAAAAGC
CTCTCTACGTGCGTCCCACGTCCCCAACGCCCGCCGACAACCGCTCGCGC
CGGCGCCTCCATCGCCTCCGCAAGAAAGAGTATTTCCTCCGCAAACAAAA
GCCGCAGCCTTTATCCGCGCGTCAGAAGCGCGCCTCGGGCCTCTACAACC
TCCCCAAGGAAGAATGCAAGTATGCGGTTTTCCAGGAGCTGCATGCCATG
TGGGTGCGGTATATGCAGGATATGCTAGACTTGGGGGCAAAGAAATTCAA
GCCGCCGATGACACCGTTGTCGCATGGGAGTAAGCTCTCCAGTGCGGATT
TTCATGGCGCGGAGGTGGAGGTTGTAAGGAGTCGGTGTGAGGGGAGGGTC
GGGGTTAAGGGGATTGTGGTTAGGGATACGAAGTTTACGTTTGTGGTTGT
TACGAGGGGGGATGAGGTTAAGACTATTCCGAAGGAGCAGACTATTTTCC
GGTTTAGTGTGCCTTTGCCTGAGGCGGATGATGCTGATGGCGCGGCGGTG
ACTGGGGAGACGAGCGCTGATTCTGCTAAGAAGGAGCTCGTGTTTGAGCT
CCATGGCAGTCAGTTCCAGAATCGTCCGGTTGACAGGGCGAACAAGAAAT
TCAAATGGCGGAATGTGGATTATATCTAAATGACAACCCCCAAACCCCAC
ATCGCACACACGCTCCTCTCGCGCGCGCACTCCCCCGACACAGCCTCGCA
ACTCTTCACCGAGCGCATAAAACAAAAGCCTCTCTACGTGCGTCCCACGT
CCCCAACGCCCGCCGACAACCGCTCGCGCCGGCGCCTCCATCGCCTCCGC
AAGAAAGAGTATTTCCTCCGCAAACAAAAGCCGCAGCCTTTATCCGCGCG
TCAGAAGCGCGCCTCGGGCCTCTACAACCTCCCCAAGGAAGAATGCAAGT
ATGCGGTTTTCCAGGAGCTGCATGCCATGTGGGTGCGGTATATGCAGGAT
ATGCTAGACTTGGGGGCAAAGAAATTCAAGCCGCCGATGACACCGTTGTC
GCATGGGAGTAAGCTCTCCAGTGCGGATTTTCATGGCGCGGAGGTGGAGG
TTGTAAGGAGTCGGTGTGAGGGGAGGGTCGGGGTTAAGGGGATTGTGGTT
AGGGATACGAAGTTTACGTTTGTGGTTGTTACGAGGGGGGATGAGGTTAA
GACTATTCCGAAGGAGCAGACTATTTTCCGGTTTAGTGTGCCTTTGCCTG
AGGCGGATGATGCTGATGGCGCGGCGGTGACTGGGGAGACGAGCGCTGAT
TCTGCTAAGAAGGAGCTCGTGTTTGAGCTCCATGGCAGTCAGTTCCAGAA
TCGTCCGGTTGACAGGGCGAACAAGAAATTCAAATGGCGGAATGTGGATT
ATATCTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0030677ribonuclease P complex
Vocabulary: Biological Process
TermDefinition
GO:0001682tRNA 5'-leader removal
GO:0008033tRNA processing
GO:0006396RNA processing
Vocabulary: Molecular Function
TermDefinition
GO:0004526ribonuclease P activity
GO:0003723RNA binding
GO:0004540ribonuclease activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_41065CAN33_41065Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_41065-T1.exon1CAN33_41065-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_41065-T1.exon2CAN33_41065-T1.exon2Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_41065-T1.cdsCAN33_41065-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_41065-T1CAN33_41065-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteBUSCO:EOG092644N1
DBxrefInterPro:IPR023534
DBxrefInterPro:IPR023538
DBxrefInterPro:IPR036980
DBxrefInterPro:IPR016848
DBxrefInterPro:IPR002730
DBxrefPFAM:PF01868
Productprotein of unknown function UPF0086 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000017.1supercontigNKJJ01000017.1:3102618..3103411 +
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