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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000017.1:3130722..3131994+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_41130-T1 ID=CAN33_41130-T1|Name=CAN33_41130-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1273bp|location=Sequence derived from alignment at NKJJ01000017.1:3130722..3131994+ (Aspergillus niger FDAARGOS_311)
ATGTCCGGTGAAAAGATCTACGAAGGCGTATTCGGTATACCTCACTCCTA
GCATTTCTGCTTTGATTTACCTCCAAGCTAATACTATGGAATGATAAATA
GCCGTCCACAAACCCCAAGGCGTCTCCTCCGCCGACGTCGTCCGCACCCT
CCAAACGCACTTCAACCCCTCCACGCTCTTCGCCCCCTGGCTCGCTGACG
AGCGCGCCCGTCGCGCCCGCGAAAGCACCTACCAGCGCAAGCGCCGCCGC
ACCCAGCGTCTCGACGTGAAGATCGGCCACGGAGGCACCCTCGACCCCCT
CGCGACCGGCATTCTCGTCGCGGGAGTCGGCAAGGGCACGAAACACCTGA
ACGAGTTCCTAGGATGCACGAAGCAATATGAGACCGTTGTGCTGTTCGGC
GCCGAGACAGATACCTATGATCGGCTGGGGAAGGTGGTGCGCAAGGCGCC
CTACGAGCATGTGACAAGGGAGATGGTGGAGAAGGCACTGGAGCAGTTCC
GTGGGAAGATTATGCAGAGGCCGCCAATTTTCTCGGCGCTGAAGGTGAAT
GGCAAGAAGCTTTATGAGTATGCCCGCGAGGGCAAGGAGCCGCCGATTGA
GATCCAGAAGAGGCCGGTCGAGGTGACGGATTTGAGGATTGTCGAGTGGT
ACGAGCCTGGAACGCATGAGTTTAAGTGGCCTGAGGTTGAGGCAGACGGG
GAGGAGAAGGCTGTTGCGGAGAAGTTGTTGGCGAAGGAGGATGAGTTGCC
GATTGTGGAGAGGGAGGCGGATGGTGAAGGAGAGGCCTCTGCGAAGAGAA
AGTCCCCGCCTGCGGAGGATGCTAAGGAGGAGAAGGTAGAGGGTGGTGAT
ACTGAGTCTGCTCCCTCGGCTAAGAAGCAGAAGGTTGCTGATGGCGAGGC
TGCGCCTGTTGCGCCGGCCGAGCAGGAGGCGTCGGATGCTCCCAATGCTG
AAGCCGTGGAATCCTCGGAATCCAAGCCCCAGTCCCAGCCCCAGCCGGCT
GCGGTGAAGATCACCATGACGGTGTCATCTGGCTTCTATGTGCGCTCCTT
GGCGCACGATCTGGGCAAGGCGGTCGGAAGCTGCGGGCTGATGTCCTCGC
TGATCCGGTCTCGTCAGGCTCAGTTCGAGCTTCACCCGGACAAGGTGCTC
GAGTATAAGGACCTCGAGGCCGGCGAGGAGGTCTGGGGCCCCAAGGTCCA
GCGATTCCTCGAGGACTGGGAGGAGAAGCGACTGGCTCGGCCGTCGTCTC
CGCGTTCCCCGAAACAAAATTAG back to topCoding sequence (CDS) from alignment at NKJJ01000017.1:3130722..3131994+ >CAN33_41130-T1 ID=CAN33_41130-T1|Name=CAN33_41130-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2412bp|location=Sequence derived from alignment at NKJJ01000017.1:3130722..3131994+ (Aspergillus niger FDAARGOS_311)
ATGTCCGGTGAAAAGATCTACGAAGGCGTATTCGCCGTCCACAAACCCCA
AGGCGTCTCCTCCGCCGACGTCGTCCGCACCCTCCAAACGCACTTCAACC
CCTCCACGCTCTTCGCCCCCTGGCTCGCTGACGAGCGCGCCCGTCGCGCC
CGCGAAAGCACCTACCAGCGCAAGCGCCGCCGCACCCAGCGTCTCGACGT
GAAGATCGGCCACGGAGGCACCCTCGACCCCCTCGCGACCGGCATTCTCG
TCGCGGGAGTCGGCAAGGGCACGAAACACCTGAACGAGTTCCTAGGATGC
ACGAAGCAATATGAGACCGTTGTGCTGTTCGGCGCCGAGACAGATACCTA
TGATCGGCTGGGGAAGGTGGTGCGCAAGGCGCCCTACGAGCATGTGACAA
GGGAGATGGTGGAGAAGGCACTGGAGCAGTTCCGTGGGAAGATTATGCAG
AGGCCGCCAATTTTCTCGGCGCTGAAGGTGAATGGCAAGAAGCTTTATGA
GTATGCCCGCGAGGGCAAGGAGCCGCCGATTGAGATCCAGAAGAGGCCGG
TCGAGGTGACGGATTTGAGGATTGTCGAGTGGTACGAGCCTGGAACGCAT
GAGTTTAAGTGGCCTGAGGTTGAGGCAGACGGGGAGGAGAAGGCTGTTGC
GGAGAAGTTGTTGGCGAAGGAGGATGAGTTGCCGATTGTGGAGAGGGAGG
CGGATGGTGAAGGAGAGGCCTCTGCGAAGAGAAAGTCCCCGCCTGCGGAG
GATGCTAAGGAGGAGAAGGTAGAGGGTGGTGATACTGAGTCTGCTCCCTC
GGCTAAGAAGCAGAAGGTTGCTGATGGCGAGGCTGCGCCTGTTGCGCCGG
CCGAGCAGGAGGCGTCGGATGCTCCCAATGCTGAAGCCGTGGAATCCTCG
GAATCCAAGCCCCAGTCCCAGCCCCAGCCGGCTGCGGTGAAGATCACCAT
GACGGTGTCATCTGGCTTCTATGTGCGCTCCTTGGCGCACGATCTGGGCA
AGGCGGTCGGAAGCTGCGGGCTGATGTCCTCGCTGATCCGGTCTCGTCAG
GCTCAGTTCGAGCTTCACCCGGACAAGGTGCTCGAGTATAAGGACCTCGA
GGCCGGCGAGGAGGTCTGGGGCCCCAAGGTCCAGCGATTCCTCGAGGACT
GGGAGGAGAAGCGACTGGCTCGGCCGTCGTCTCCGCGTTCCCCGAAACAA
AATTAGATGTCCGGTGAAAAGATCTACGAAGGCGTATTCGCCGTCCACAA
ACCCCAAGGCGTCTCCTCCGCCGACGTCGTCCGCACCCTCCAAACGCACT
TCAACCCCTCCACGCTCTTCGCCCCCTGGCTCGCTGACGAGCGCGCCCGT
CGCGCCCGCGAAAGCACCTACCAGCGCAAGCGCCGCCGCACCCAGCGTCT
CGACGTGAAGATCGGCCACGGAGGCACCCTCGACCCCCTCGCGACCGGCA
TTCTCGTCGCGGGAGTCGGCAAGGGCACGAAACACCTGAACGAGTTCCTA
GGATGCACGAAGCAATATGAGACCGTTGTGCTGTTCGGCGCCGAGACAGA
TACCTATGATCGGCTGGGGAAGGTGGTGCGCAAGGCGCCCTACGAGCATG
TGACAAGGGAGATGGTGGAGAAGGCACTGGAGCAGTTCCGTGGGAAGATT
ATGCAGAGGCCGCCAATTTTCTCGGCGCTGAAGGTGAATGGCAAGAAGCT
TTATGAGTATGCCCGCGAGGGCAAGGAGCCGCCGATTGAGATCCAGAAGA
GGCCGGTCGAGGTGACGGATTTGAGGATTGTCGAGTGGTACGAGCCTGGA
ACGCATGAGTTTAAGTGGCCTGAGGTTGAGGCAGACGGGGAGGAGAAGGC
TGTTGCGGAGAAGTTGTTGGCGAAGGAGGATGAGTTGCCGATTGTGGAGA
GGGAGGCGGATGGTGAAGGAGAGGCCTCTGCGAAGAGAAAGTCCCCGCCT
GCGGAGGATGCTAAGGAGGAGAAGGTAGAGGGTGGTGATACTGAGTCTGC
TCCCTCGGCTAAGAAGCAGAAGGTTGCTGATGGCGAGGCTGCGCCTGTTG
CGCCGGCCGAGCAGGAGGCGTCGGATGCTCCCAATGCTGAAGCCGTGGAA
TCCTCGGAATCCAAGCCCCAGTCCCAGCCCCAGCCGGCTGCGGTGAAGAT
CACCATGACGGTGTCATCTGGCTTCTATGTGCGCTCCTTGGCGCACGATC
TGGGCAAGGCGGTCGGAAGCTGCGGGCTGATGTCCTCGCTGATCCGGTCT
CGTCAGGCTCAGTTCGAGCTTCACCCGGACAAGGTGCTCGAGTATAAGGA
CCTCGAGGCCGGCGAGGAGGTCTGGGGCCCCAAGGTCCAGCGATTCCTCG
AGGACTGGGAGGAGAAGCGACTGGCTCGGCCGTCGTCTCCGCGTTCCCCG
AAACAAAATTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0009982 | pseudouridine synthase activity |
| GO:0003723 | RNA binding |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0009451 | RNA modification |
| GO:0001522 | pseudouridine synthesis |
| GO:0006396 | RNA processing |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | antiSMASH:Cluster_10000171.7 |
| Note | BUSCO:EOG09264HU0 |
| DBxref | InterPro:IPR020103 |
| DBxref | InterPro:IPR014780 |
| DBxref | InterPro:IPR002501 |
| DBxref | PFAM:PF01509 |
| Product | TruB family pseudouridylate synthase (N terminal domain) family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000017.1 | supercontig | NKJJ01000017.1:3130722..3131994 + |
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