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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000017.1:3497225..3497933+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_41725-T1 ID=CAN33_41725-T1|Name=CAN33_41725-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=709bp|location=Sequence derived from alignment at NKJJ01000017.1:3497225..3497933+ (Aspergillus niger FDAARGOS_311)
ATGGCCAACTATCTCGCCTCCATCTTCGGTACAGAGCAGGACAAGGTCAA
CTGCTCCTTCTACTACAAAATCGGAGCTTGCAGACATGGCGACCGCTGCT
CCCGAAAGCACGTTAAGCCGTCATACTCTCAGACGATCCTGATGCCGAAC
ATGTACCAGAATCCCGCGTACGACCCGAAGAGCAAGATGAACCCCAGTCA
GCTACAGAACCACTTTGATGCTTTCTACGAGGATGTGTGGTGCGAGATGT
GCAAGTACGGCGAGTTGGAGGAGTTGGTTGTCTGCGATAACAACAATGAC
CGTGAGTCGCATCCATTCATATCCCTTCCCCGGATAGTGGTAAGATATAG
GCTAACATAGAGTTTCTTCTTCTCTAATAGACCTCATCGGAAATGTCTAC
GCGCGCTTCAAATACGAAGAAGATGCCCAGGCCGCCTGCGACGCTTTGAA
TTCACGGTGGTACGCGGCACGACCTATATATTGCGAATTATCACCGGTTA
CAGATTTCCGAGAAGCTTGTTGTCGGTTAAATAGCGGCGAGGGGTGTGTA
CGTGGTGGATTCTGCAACTTCATTCATCGGAAGGACCCCAGCAATGAATT
GGATCGGGATCTTCGTCTCAGTACGAAGAAGTGGTTGAAGGAGCGTGGCA
GGGATGCGAGAAGTGTCAGCCGCAGTCCTAGTCCGGAGCCGACCCGGAGG
AGGTACTAG back to topCoding sequence (CDS) from alignment at NKJJ01000017.1:3497225..3497933+ >CAN33_41725-T1 ID=CAN33_41725-T1|Name=CAN33_41725-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1260bp|location=Sequence derived from alignment at NKJJ01000017.1:3497225..3497933+ (Aspergillus niger FDAARGOS_311)
ATGGCCAACTATCTCGCCTCCATCTTCGGTACAGAGCAGGACAAGGTCAA
CTGCTCCTTCTACTACAAAATCGGAGCTTGCAGACATGGCGACCGCTGCT
CCCGAAAGCACGTTAAGCCGTCATACTCTCAGACGATCCTGATGCCGAAC
ATGTACCAGAATCCCGCGTACGACCCGAAGAGCAAGATGAACCCCAGTCA
GCTACAGAACCACTTTGATGCTTTCTACGAGGATGTGTGGTGCGAGATGT
GCAAGTACGGCGAGTTGGAGGAGTTGGTTGTCTGCGATAACAACAATGAC
CACCTCATCGGAAATGTCTACGCGCGCTTCAAATACGAAGAAGATGCCCA
GGCCGCCTGCGACGCTTTGAATTCACGGTGGTACGCGGCACGACCTATAT
ATTGCGAATTATCACCGGTTACAGATTTCCGAGAAGCTTGTTGTCGGTTA
AATAGCGGCGAGGGGTGTGTACGTGGTGGATTCTGCAACTTCATTCATCG
GAAGGACCCCAGCAATGAATTGGATCGGGATCTTCGTCTCAGTACGAAGA
AGTGGTTGAAGGAGCGTGGCAGGGATGCGAGAAGTGTCAGCCGCAGTCCT
AGTCCGGAGCCGACCCGGAGGAGGTACTAGATGGCCAACTATCTCGCCTC
CATCTTCGGTACAGAGCAGGACAAGGTCAACTGCTCCTTCTACTACAAAA
TCGGAGCTTGCAGACATGGCGACCGCTGCTCCCGAAAGCACGTTAAGCCG
TCATACTCTCAGACGATCCTGATGCCGAACATGTACCAGAATCCCGCGTA
CGACCCGAAGAGCAAGATGAACCCCAGTCAGCTACAGAACCACTTTGATG
CTTTCTACGAGGATGTGTGGTGCGAGATGTGCAAGTACGGCGAGTTGGAG
GAGTTGGTTGTCTGCGATAACAACAATGACCACCTCATCGGAAATGTCTA
CGCGCGCTTCAAATACGAAGAAGATGCCCAGGCCGCCTGCGACGCTTTGA
ATTCACGGTGGTACGCGGCACGACCTATATATTGCGAATTATCACCGGTT
ACAGATTTCCGAGAAGCTTGTTGTCGGTTAAATAGCGGCGAGGGGTGTGT
ACGTGGTGGATTCTGCAACTTCATTCATCGGAAGGACCCCAGCAATGAAT
TGGATCGGGATCTTCGTCTCAGTACGAAGAAGTGGTTGAAGGAGCGTGGC
AGGGATGCGAGAAGTGTCAGCCGCAGTCCTAGTCCGGAGCCGACCCGGAG
GAGGTACTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0089701 | U2AF complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0000398 | mRNA splicing, via spliceosome |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0046872 | metal ion binding |
| GO:0003723 | RNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR035979 |
| DBxref | InterPro:IPR000504 |
| DBxref | InterPro:IPR012677 |
| DBxref | InterPro:IPR000571 |
| DBxref | InterPro:IPR009145 |
| DBxref | PFAM:PF00642 |
| Product | Zinc finger C-x8-C-x5-C-x3-H type (and similar) family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000017.1 | supercontig | NKJJ01000017.1:3497225..3497933 + |
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