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CAN33_41730-T1, CAN33_41730-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_41730-T1
Unique NameCAN33_41730-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000017.1:3498459..3499609+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_41730-T1 ID=CAN33_41730-T1|Name=CAN33_41730-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1151bp|location=Sequence derived from alignment at NKJJ01000017.1:3498459..3499609+ (Aspergillus niger FDAARGOS_311)
ATGCCCCGATACGCAGAAGACCACGACCGCTACGATGACAGCAACCGCGC
ATTTCTCCAAGCCTTCATGGCGCGGTCCACCATGACCTTTACACAAGCAA
AGCCCGTTCTGGCTGCTATATTCTCCATCCGAGGTAATCCTCCCATACTC
ATACACCAAAATACCAAACTAAATCCGGATCAATATAGACGACGAACAAA
TCTCCCCAGAAGACATAACGGAAGACGACCTCCAAACCTACATCGCCGCC
GCTAACAGCGCCATATCCCCCTTCGACCTCGAAATCCGGAGCATACTACC
CCAGATTGAAATCAACAACAACAATGACCCTCCCCCAGCTCCGGAACGAG
TCTACGCCCTCGTCAACACAACCAGCGACGCCCTCACCCAGCTCGCAACA
ACATACTCCGCCGACGAAATCGCCTTCGTGAAGCGCATCCTCGACGCTAT
GTTCGACACATACAATACCCGCCGCCAGGAAGCAATGGTCATAAGTAGTA
TGCAGGCATTGCAGCTGGCCAAGGCTGGTGCAGGGGACGCAAATAGACGG
GAGTCAGGGACACAGCAGCAAGCGACGCAGGGAGGCGCGGCGCAGTCGCT
GACTATGACGCAGGCGGAGACGATGCTGAAGCAGCTTGTCGAGCAGGGGT
GGTTTGAGAAGAGCAGGAAGGGGTATTATCGGTTGAGTCCGCGCGGGTTG
ATGGAGTTGAGGGGGTGGTTGGTGGCGGCGTATAATGATGAGGGGATTAG
GAAGATTAAGTTCTGTGCTGCGTGTAGGGATATCATTACTGCTGTGAGTT
GGAGAGTATTCCTTGCTATGCGGGCTTGTTGGCTAATGATTCTGTGATTG
TGACCAGGGCCAACGATGCGGAGACCGCGATTGTACTGGACGATTGCACG
ACCACTGCATGCGGAATTTCTTTCGTATGCAACAGGCTGAAAGCTGTCCT
GTGTGCAAGACTGCGTGGCCGGGTGATAGATACGTTGGTGAGCGCGCGAT
TACTATGTCTGATCCGGCTGCGCAGAGGGCTAGACGGTCGGCTGCGAATA
CTCAGCAGGCGGAAGCTGGGCCTAGTACGCAGTTCACGTTGCCGGAACTG
GATGTTGAAGATGAAGCGGATGGTGGTGAGGAAGAGGCTGGGAGTGATTG
A
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Coding sequence (CDS) from alignment at NKJJ01000017.1:3498459..3499609+

>CAN33_41730-T1 ID=CAN33_41730-T1|Name=CAN33_41730-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3096bp|location=Sequence derived from alignment at NKJJ01000017.1:3498459..3499609+ (Aspergillus niger FDAARGOS_311)
ATGCCCCGATACGCAGAAGACCACGACCGCTACGATGACAGCAACCGCGC
ATTTCTCCAAGCCTTCATGGCGCGGTCCACCATGACCTTTACACAAGCAA
AGCCCGTTCTGGCTGCTATATTCTCCATCCGAGACGACGAACAAATCTCC
CCAGAAGACATAACGGAAGACGACCTCCAAACCTACATCGCCGCCGCTAA
CAGCGCCATATCCCCCTTCGACCTCGAAATCCGGAGCATACTACCCCAGA
TTGAAATCAACAACAACAATGACCCTCCCCCAGCTCCGGAACGAGTCTAC
GCCCTCGTCAACACAACCAGCGACGCCCTCACCCAGCTCGCAACAACATA
CTCCGCCGACGAAATCGCCTTCGTGAAGCGCATCCTCGACGCTATGTTCG
ACACATACAATACCCGCCGCCAGGAAGCAATGGTCATAAGTAGTATGCAG
GCATTGCAGCTGGCCAAGGCTGGTGCAGGGGACGCAAATAGACGGGAGTC
AGGGACACAGCAGCAAGCGACGCAGGGAGGCGCGGCGCAGTCGCTGACTA
TGACGCAGGCGGAGACGATGCTGAAGCAGCTTGTCGAGCAGGGGTGGTTT
GAGAAGAGCAGGAAGGGGTATTATCGGTTGAGTCCGCGCGGGTTGATGGA
GTTGAGGGGGTGGTTGGTGGCGGCGTATAATGATGAGGGGATTAGGAAGA
TTAAGTTCTGTGCTGCGTGTAGGGATATCATTACTGCTGGCCAACGATGC
GGAGACCGCGATTGTACTGGACGATTGCACGACCACTGCATGCGGAATTT
CTTTCGTATGCAACAGGCTGAAAGCTGTCCTGTGTGCAAGACTGCGTGGC
CGGGTGATAGATACGTTGGTGAGCGCGCGATTACTATGTCTGATCCGGCT
GCGCAGAGGGCTAGACGGTCGGCTGCGAATACTCAGCAGGCGGAAGCTGG
GCCTAGTACGCAGTTCACGTTGCCGGAACTGGATGTTGAAGATGAAGCGG
ATGGTGGTGAGGAAGAGGCTGGGAGTGATTGAATGCCCCGATACGCAGAA
GACCACGACCGCTACGATGACAGCAACCGCGCATTTCTCCAAGCCTTCAT
GGCGCGGTCCACCATGACCTTTACACAAGCAAAGCCCGTTCTGGCTGCTA
TATTCTCCATCCGAGACGACGAACAAATCTCCCCAGAAGACATAACGGAA
GACGACCTCCAAACCTACATCGCCGCCGCTAACAGCGCCATATCCCCCTT
CGACCTCGAAATCCGGAGCATACTACCCCAGATTGAAATCAACAACAACA
ATGACCCTCCCCCAGCTCCGGAACGAGTCTACGCCCTCGTCAACACAACC
AGCGACGCCCTCACCCAGCTCGCAACAACATACTCCGCCGACGAAATCGC
CTTCGTGAAGCGCATCCTCGACGCTATGTTCGACACATACAATACCCGCC
GCCAGGAAGCAATGGTCATAAGTAGTATGCAGGCATTGCAGCTGGCCAAG
GCTGGTGCAGGGGACGCAAATAGACGGGAGTCAGGGACACAGCAGCAAGC
GACGCAGGGAGGCGCGGCGCAGTCGCTGACTATGACGCAGGCGGAGACGA
TGCTGAAGCAGCTTGTCGAGCAGGGGTGGTTTGAGAAGAGCAGGAAGGGG
TATTATCGGTTGAGTCCGCGCGGGTTGATGGAGTTGAGGGGGTGGTTGGT
GGCGGCGTATAATGATGAGGGGATTAGGAAGATTAAGTTCTGTGCTGCGT
GTAGGGATATCATTACTGCTGGCCAACGATGCGGAGACCGCGATTGTACT
GGACGATTGCACGACCACTGCATGCGGAATTTCTTTCGTATGCAACAGGC
TGAAAGCTGTCCTGTGTGCAAGACTGCGTGGCCGGGTGATAGATACGTTG
GTGAGCGCGCGATTACTATGTCTGATCCGGCTGCGCAGAGGGCTAGACGG
TCGGCTGCGAATACTCAGCAGGCGGAAGCTGGGCCTAGTACGCAGTTCAC
GTTGCCGGAACTGGATGTTGAAGATGAAGCGGATGGTGGTGAGGAAGAGG
CTGGGAGTGATTGAATGCCCCGATACGCAGAAGACCACGACCGCTACGAT
GACAGCAACCGCGCATTTCTCCAAGCCTTCATGGCGCGGTCCACCATGAC
CTTTACACAAGCAAAGCCCGTTCTGGCTGCTATATTCTCCATCCGAGACG
ACGAACAAATCTCCCCAGAAGACATAACGGAAGACGACCTCCAAACCTAC
ATCGCCGCCGCTAACAGCGCCATATCCCCCTTCGACCTCGAAATCCGGAG
CATACTACCCCAGATTGAAATCAACAACAACAATGACCCTCCCCCAGCTC
CGGAACGAGTCTACGCCCTCGTCAACACAACCAGCGACGCCCTCACCCAG
CTCGCAACAACATACTCCGCCGACGAAATCGCCTTCGTGAAGCGCATCCT
CGACGCTATGTTCGACACATACAATACCCGCCGCCAGGAAGCAATGGTCA
TAAGTAGTATGCAGGCATTGCAGCTGGCCAAGGCTGGTGCAGGGGACGCA
AATAGACGGGAGTCAGGGACACAGCAGCAAGCGACGCAGGGAGGCGCGGC
GCAGTCGCTGACTATGACGCAGGCGGAGACGATGCTGAAGCAGCTTGTCG
AGCAGGGGTGGTTTGAGAAGAGCAGGAAGGGGTATTATCGGTTGAGTCCG
CGCGGGTTGATGGAGTTGAGGGGGTGGTTGGTGGCGGCGTATAATGATGA
GGGGATTAGGAAGATTAAGTTCTGTGCTGCGTGTAGGGATATCATTACTG
CTGGCCAACGATGCGGAGACCGCGATTGTACTGGACGATTGCACGACCAC
TGCATGCGGAATTTCTTTCGTATGCAACAGGCTGAAAGCTGTCCTGTGTG
CAAGACTGCGTGGCCGGGTGATAGATACGTTGGTGAGCGCGCGATTACTA
TGTCTGATCCGGCTGCGCAGAGGGCTAGACGGTCGGCTGCGAATACTCAG
CAGGCGGAAGCTGGGCCTAGTACGCAGTTCACGTTGCCGGAACTGGATGT
TGAAGATGAAGCGGATGGTGGTGAGGAAGAGGCTGGGAGTGATTGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0030915Smc5-Smc6 complex
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_41730CAN33_41730Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_41730-T1.exon1CAN33_41730-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_41730-T1.exon2CAN33_41730-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_41730-T1.exon3CAN33_41730-T1.exon3Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_41730-T1.cdsCAN33_41730-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_41730-T1CAN33_41730-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteEggNog:ENOG41
NoteBUSCO:EOG092645L9
DBxrefInterPro:IPR001841
DBxrefInterPro:IPR013083
DBxrefInterPro:IPR011513
DBxrefInterPro:IPR036388
DBxrefInterPro:IPR014857
DBxrefPFAM:PF08746
DBxrefPFAM:PF07574
ProductNse1 non-SMC component of SMC5-6 complex family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000017.1supercontigNKJJ01000017.1:3498459..3499609 +
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