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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000022.1:720890..723325- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_43400-T1 ID=CAN33_43400-T1|Name=CAN33_43400-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=2436bp|location=Sequence derived from alignment at NKJJ01000022.1:720890..723325- (Aspergillus niger FDAARGOS_311)
ATGGTTGATCGACGCTCGGATTCTGAAAACGGTTCGCGTGCTAAACGTCA
AAAGATGGACAAGTCTGAAACCGATCCCAAGGACAATCCGTACCTGGCTC
ACATGTATGCGGACGGCAACTCCAACACAGGGACCGATGGCACCACAGAT
CTTCACCCCGCCTTTGGGAAGATGAAGAGGCACCAGACCACCGCTGCGAT
GGCTAAGAAGGTGGAAGATGGTGATATCAACCCGTTCAACGGTCAACCTT
TCTCCAGCAAATATGTTTCCATCCTGCAGACTCGTCGCGACCTGCCCGTG
CATGCTCAGAGGTGAGTTCCCATACCCATATAGATGGTTTGCCACATCGC
AAATGGGTTCTAACTATGTTTTTCTAAAGAGATGAATTCCTGGAGCTCTA
TCAAAAGTCGCAAATTCTGGTCTTCGTTGGTGAAACTGGTTCCGGAAAGA
CCACGCAGATTCCCCAGTTCGTCCTGTTCGATGACATGCCGCAAACTCAG
CGCAAGATGGTCGCTTGTACCCAGCCTCGTCGTGTCGCCGCCATGTCCGT
CGCTCAACGTGTCGCCGCCGAGCTGGATGTCAAGCTTGGAGAGGAAGTTG
GTTACAGCATCCGTTTCGAAGATATGACCAGTTCCAAGACTGTGCTCAAG
TACATGACGGACGGTATGCTTCTGAGAGAAGCCATGAACGACCACAACCT
CAACCGCTACAGTACCATCATTCTGGACGAAGCCCACGAGAGAACAATGG
CCACTGATGTTCTCATGGGTCTTCTCAAGGAAGTTGTTGTGCGCCGACCT
GACCTGAAGATCATTATCATGTCTGCTACTCTGGATGCTCAGAAGTTCCA
GCGTTACTTCAACGACGCCCCTCTCCTTGCGGTTCCCGGTCGTACTCATC
CTGTCGAGATCTTCTATACCCCTGAGCCTGAGCAGGATTATGTGGAAGCT
GCCATTCGCACCGTCCTGCAGATCCACGCGACAGAAGACGAAGGTGACAT
CCTTCTCTTCTTGACTGGTGAAGAAGAAATCGAAGACGCCTCACGGAAGA
TCTCGTTAGAAGCCGATGAGATGGTAAGAGAGGCCGATGCTGGTCCCATC
AAGGTCTACCCTCTCTACGGTAGTCTGCCCCCGCATATGCAGCAGCGCAT
TTTCGAACCGGCACCCCCTCCTCGCCGTCCGGGAGGCCGTCCTGGCCGGA
AGGTCATTGTATCCACCAACATCGCTGAAACTTCGCTTACCATCGACGGT
ATCGTCTACGTCGTCGATCCTGGCTTCTCGAAGCAGAAGATCTACAACCC
CCGTATCCGTGTCGAGTCTCTTCTGGTATCTCCCATCTCGAAGGCTTCCG
CGCAACAGAGAGCTGGTCGTGCTGGTCGTACGCGCCCCGGAAAGTGCTTC
CGTCTGTACACTGAGGGGGCTTTTAAGAAGGAACTCATCGACCAGACATA
CCCCGAGATTCTGCGCTCGAACCTTTCTTCTACCGTGCTGGAATTGAAGA
AGCTAGGCATTGATGATCTTGTTCACTTCGATCTGATGGATCCTCCCGCT
CCGGAGACTTTGATGAGAGCTTTGGAAGAGCTCAACTATCTAGCTTGCTT
GGACGATGATGGAAACCTCACTCAGCTGGGACGCCTGGCCTCCGAGTTCC
CCCTTGATCCCGCACTTGCTGTGATGCTGATCAGCTCCCCCGAATTTTAC
TGCTCCAACGAAATTCTTTCTATCACAGCCCTGCTTTCCGTCCCGCAAGT
CTTCGTCAGACCTGCTTCTCAGCGGAAGCGTGCTGATGAGATGAAGGATC
TTTTTGCCCACCCTGACGGTGACCACCTTACCCTTCTCAATGTCTACCAT
GCTTTTAAGAGCCCTGAAGCGCAGGAGAACTTGAAGCAATGGTGTCACGA
CCACTTCCTCTCTCTTAGATCGCTGCAATCGGCAGACAACGTGCGCATGC
AGCTTCTGCGCATCATGGAACGTGAGGAACTCGAGATGGTGTCCACCCCC
TTCGAGGACAAGAAATATTACGAAAACATCCGCCGTGCGCTGTGCGCAGG
CTTCTTCATGCAGGTCGCCAAGAAGGAGACTCAGGGCAAGAACATGTATG
TCACGATCAAGGACAACCAGAACGTTCTTTTGCACCCCTCGACCGTCTTG
GGCCACGAAGCGGAATGGGTTCTCTACAACGAATTCGTCCTCACCACCAA
GAATTACATTCGGACTGTCACGGCTGTCAAGCCCGAATGGCTCATTGTAA
GTCTTACCCTGACCCTCAATCAAACACTCAGACTAGTACTAACATAGTGT
CTCCTAGGACATCGCACCCACTTACTACGACATCTCCGGCTTCCCCAAGG
GCGAGATCCGCTCCTCCCTCCTTCGCGCTGCTGAGAGACTTTCCCGCAAG
GAGAAGATGCGCTCTGATTCCAGCAGAAGACGATAG back to topCoding sequence (CDS) from alignment at NKJJ01000022.1:720890..723325- >CAN33_43400-T1 ID=CAN33_43400-T1|Name=CAN33_43400-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=6921bp|location=Sequence derived from alignment at NKJJ01000022.1:720890..723325- (Aspergillus niger FDAARGOS_311)
GACATCGCACCCACTTACTACGACATCTCCGGCTTCCCCAAGGGCGAGAT
CCGCTCCTCCCTCCTTCGCGCTGCTGAGAGACTTTCCCGCAAGGAGAAGA
TGCGCTCTGATTCCAGCAGAAGACGATAGAGATGAATTCCTGGAGCTCTA
TCAAAAGTCGCAAATTCTGGTCTTCGTTGGTGAAACTGGTTCCGGAAAGA
CCACGCAGATTCCCCAGTTCGTCCTGTTCGATGACATGCCGCAAACTCAG
CGCAAGATGGTCGCTTGTACCCAGCCTCGTCGTGTCGCCGCCATGTCCGT
CGCTCAACGTGTCGCCGCCGAGCTGGATGTCAAGCTTGGAGAGGAAGTTG
GTTACAGCATCCGTTTCGAAGATATGACCAGTTCCAAGACTGTGCTCAAG
TACATGACGGACGGTATGCTTCTGAGAGAAGCCATGAACGACCACAACCT
CAACCGCTACAGTACCATCATTCTGGACGAAGCCCACGAGAGAACAATGG
CCACTGATGTTCTCATGGGTCTTCTCAAGGAAGTTGTTGTGCGCCGACCT
GACCTGAAGATCATTATCATGTCTGCTACTCTGGATGCTCAGAAGTTCCA
GCGTTACTTCAACGACGCCCCTCTCCTTGCGGTTCCCGGTCGTACTCATC
CTGTCGAGATCTTCTATACCCCTGAGCCTGAGCAGGATTATGTGGAAGCT
GCCATTCGCACCGTCCTGCAGATCCACGCGACAGAAGACGAAGGTGACAT
CCTTCTCTTCTTGACTGGTGAAGAAGAAATCGAAGACGCCTCACGGAAGA
TCTCGTTAGAAGCCGATGAGATGGTAAGAGAGGCCGATGCTGGTCCCATC
AAGGTCTACCCTCTCTACGGTAGTCTGCCCCCGCATATGCAGCAGCGCAT
TTTCGAACCGGCACCCCCTCCTCGCCGTCCGGGAGGCCGTCCTGGCCGGA
AGGTCATTGTATCCACCAACATCGCTGAAACTTCGCTTACCATCGACGGT
ATCGTCTACGTCGTCGATCCTGGCTTCTCGAAGCAGAAGATCTACAACCC
CCGTATCCGTGTCGAGTCTCTTCTGGTATCTCCCATCTCGAAGGCTTCCG
CGCAACAGAGAGCTGGTCGTGCTGGTCGTACGCGCCCCGGAAAGTGCTTC
CGTCTGTACACTGAGGGGGCTTTTAAGAAGGAACTCATCGACCAGACATA
CCCCGAGATTCTGCGCTCGAACCTTTCTTCTACCGTGCTGGAATTGAAGA
AGCTAGGCATTGATGATCTTGTTCACTTCGATCTGATGGATCCTCCCGCT
CCGGAGACTTTGATGAGAGCTTTGGAAGAGCTCAACTATCTAGCTTGCTT
GGACGATGATGGAAACCTCACTCAGCTGGGACGCCTGGCCTCCGAGTTCC
CCCTTGATCCCGCACTTGCTGTGATGCTGATCAGCTCCCCCGAATTTTAC
TGCTCCAACGAAATTCTTTCTATCACAGCCCTGCTTTCCGTCCCGCAAGT
CTTCGTCAGACCTGCTTCTCAGCGGAAGCGTGCTGATGAGATGAAGGATC
TTTTTGCCCACCCTGACGGTGACCACCTTACCCTTCTCAATGTCTACCAT
GCTTTTAAGAGCCCTGAAGCGCAGGAGAACTTGAAGCAATGGTGTCACGA
CCACTTCCTCTCTCTTAGATCGCTGCAATCGGCAGACAACGTGCGCATGC
AGCTTCTGCGCATCATGGAACGTGAGGAACTCGAGATGGTGTCCACCCCC
TTCGAGGACAAGAAATATTACGAAAACATCCGCCGTGCGCTGTGCGCAGG
CTTCTTCATGCAGGTCGCCAAGAAGGAGACTCAGGGCAAGAACATGTATG
TCACGATCAAGGACAACCAGAACGTTCTTTTGCACCCCTCGACCGTCTTG
GGCCACGAAGCGGAATGGGTTCTCTACAACGAATTCGTCCTCACCACCAA
GAATTACATTCGGACTGTCACGGCTGTCAAGCCCGAATGGCTCATTATGG
TTGATCGACGCTCGGATTCTGAAAACGGTTCGCGTGCTAAACGTCAAAAG
ATGGACAAGTCTGAAACCGATCCCAAGGACAATCCGTACCTGGCTCACAT
GTATGCGGACGGCAACTCCAACACAGGGACCGATGGCACCACAGATCTTC
ACCCCGCCTTTGGGAAGATGAAGAGGCACCAGACCACCGCTGCGATGGCT
AAGAAGGTGGAAGATGGTGATATCAACCCGTTCAACGGTCAACCTTTCTC
CAGCAAATATGTTTCCATCCTGCAGACTCGTCGCGACCTGCCCGTGCATG
CTCAGAGGACATCGCACCCACTTACTACGACATCTCCGGCTTCCCCAAGG
GCGAGATCCGCTCCTCCCTCCTTCGCGCTGCTGAGAGACTTTCCCGCAAG
GAGAAGATGCGCTCTGATTCCAGCAGAAGACGATAGAGATGAATTCCTGG
AGCTCTATCAAAAGTCGCAAATTCTGGTCTTCGTTGGTGAAACTGGTTCC
GGAAAGACCACGCAGATTCCCCAGTTCGTCCTGTTCGATGACATGCCGCA
AACTCAGCGCAAGATGGTCGCTTGTACCCAGCCTCGTCGTGTCGCCGCCA
TGTCCGTCGCTCAACGTGTCGCCGCCGAGCTGGATGTCAAGCTTGGAGAG
GAAGTTGGTTACAGCATCCGTTTCGAAGATATGACCAGTTCCAAGACTGT
GCTCAAGTACATGACGGACGGTATGCTTCTGAGAGAAGCCATGAACGACC
ACAACCTCAACCGCTACAGTACCATCATTCTGGACGAAGCCCACGAGAGA
ACAATGGCCACTGATGTTCTCATGGGTCTTCTCAAGGAAGTTGTTGTGCG
CCGACCTGACCTGAAGATCATTATCATGTCTGCTACTCTGGATGCTCAGA
AGTTCCAGCGTTACTTCAACGACGCCCCTCTCCTTGCGGTTCCCGGTCGT
ACTCATCCTGTCGAGATCTTCTATACCCCTGAGCCTGAGCAGGATTATGT
GGAAGCTGCCATTCGCACCGTCCTGCAGATCCACGCGACAGAAGACGAAG
GTGACATCCTTCTCTTCTTGACTGGTGAAGAAGAAATCGAAGACGCCTCA
CGGAAGATCTCGTTAGAAGCCGATGAGATGGTAAGAGAGGCCGATGCTGG
TCCCATCAAGGTCTACCCTCTCTACGGTAGTCTGCCCCCGCATATGCAGC
AGCGCATTTTCGAACCGGCACCCCCTCCTCGCCGTCCGGGAGGCCGTCCT
GGCCGGAAGGTCATTGTATCCACCAACATCGCTGAAACTTCGCTTACCAT
CGACGGTATCGTCTACGTCGTCGATCCTGGCTTCTCGAAGCAGAAGATCT
ACAACCCCCGTATCCGTGTCGAGTCTCTTCTGGTATCTCCCATCTCGAAG
GCTTCCGCGCAACAGAGAGCTGGTCGTGCTGGTCGTACGCGCCCCGGAAA
GTGCTTCCGTCTGTACACTGAGGGGGCTTTTAAGAAGGAACTCATCGACC
AGACATACCCCGAGATTCTGCGCTCGAACCTTTCTTCTACCGTGCTGGAA
TTGAAGAAGCTAGGCATTGATGATCTTGTTCACTTCGATCTGATGGATCC
TCCCGCTCCGGAGACTTTGATGAGAGCTTTGGAAGAGCTCAACTATCTAG
CTTGCTTGGACGATGATGGAAACCTCACTCAGCTGGGACGCCTGGCCTCC
GAGTTCCCCCTTGATCCCGCACTTGCTGTGATGCTGATCAGCTCCCCCGA
ATTTTACTGCTCCAACGAAATTCTTTCTATCACAGCCCTGCTTTCCGTCC
CGCAAGTCTTCGTCAGACCTGCTTCTCAGCGGAAGCGTGCTGATGAGATG
AAGGATCTTTTTGCCCACCCTGACGGTGACCACCTTACCCTTCTCAATGT
CTACCATGCTTTTAAGAGCCCTGAAGCGCAGGAGAACTTGAAGCAATGGT
GTCACGACCACTTCCTCTCTCTTAGATCGCTGCAATCGGCAGACAACGTG
CGCATGCAGCTTCTGCGCATCATGGAACGTGAGGAACTCGAGATGGTGTC
CACCCCCTTCGAGGACAAGAAATATTACGAAAACATCCGCCGTGCGCTGT
GCGCAGGCTTCTTCATGCAGGTCGCCAAGAAGGAGACTCAGGGCAAGAAC
ATGTATGTCACGATCAAGGACAACCAGAACGTTCTTTTGCACCCCTCGAC
CGTCTTGGGCCACGAAGCGGAATGGGTTCTCTACAACGAATTCGTCCTCA
CCACCAAGAATTACATTCGGACTGTCACGGCTGTCAAGCCCGAATGGCTC
ATTATGGTTGATCGACGCTCGGATTCTGAAAACGGTTCGCGTGCTAAACG
TCAAAAGATGGACAAGTCTGAAACCGATCCCAAGGACAATCCGTACCTGG
CTCACATGTATGCGGACGGCAACTCCAACACAGGGACCGATGGCACCACA
GATCTTCACCCCGCCTTTGGGAAGATGAAGAGGCACCAGACCACCGCTGC
GATGGCTAAGAAGGTGGAAGATGGTGATATCAACCCGTTCAACGGTCAAC
CTTTCTCCAGCAAATATGTTTCCATCCTGCAGACTCGTCGCGACCTGCCC
GTGCATGCTCAGAGGACATCGCACCCACTTACTACGACATCTCCGGCTTC
CCCAAGGGCGAGATCCGCTCCTCCCTCCTTCGCGCTGCTGAGAGACTTTC
CCGCAAGGAGAAGATGCGCTCTGATTCCAGCAGAAGACGATAGAGATGAA
TTCCTGGAGCTCTATCAAAAGTCGCAAATTCTGGTCTTCGTTGGTGAAAC
TGGTTCCGGAAAGACCACGCAGATTCCCCAGTTCGTCCTGTTCGATGACA
TGCCGCAAACTCAGCGCAAGATGGTCGCTTGTACCCAGCCTCGTCGTGTC
GCCGCCATGTCCGTCGCTCAACGTGTCGCCGCCGAGCTGGATGTCAAGCT
TGGAGAGGAAGTTGGTTACAGCATCCGTTTCGAAGATATGACCAGTTCCA
AGACTGTGCTCAAGTACATGACGGACGGTATGCTTCTGAGAGAAGCCATG
AACGACCACAACCTCAACCGCTACAGTACCATCATTCTGGACGAAGCCCA
CGAGAGAACAATGGCCACTGATGTTCTCATGGGTCTTCTCAAGGAAGTTG
TTGTGCGCCGACCTGACCTGAAGATCATTATCATGTCTGCTACTCTGGAT
GCTCAGAAGTTCCAGCGTTACTTCAACGACGCCCCTCTCCTTGCGGTTCC
CGGTCGTACTCATCCTGTCGAGATCTTCTATACCCCTGAGCCTGAGCAGG
ATTATGTGGAAGCTGCCATTCGCACCGTCCTGCAGATCCACGCGACAGAA
GACGAAGGTGACATCCTTCTCTTCTTGACTGGTGAAGAAGAAATCGAAGA
CGCCTCACGGAAGATCTCGTTAGAAGCCGATGAGATGGTAAGAGAGGCCG
ATGCTGGTCCCATCAAGGTCTACCCTCTCTACGGTAGTCTGCCCCCGCAT
ATGCAGCAGCGCATTTTCGAACCGGCACCCCCTCCTCGCCGTCCGGGAGG
CCGTCCTGGCCGGAAGGTCATTGTATCCACCAACATCGCTGAAACTTCGC
TTACCATCGACGGTATCGTCTACGTCGTCGATCCTGGCTTCTCGAAGCAG
AAGATCTACAACCCCCGTATCCGTGTCGAGTCTCTTCTGGTATCTCCCAT
CTCGAAGGCTTCCGCGCAACAGAGAGCTGGTCGTGCTGGTCGTACGCGCC
CCGGAAAGTGCTTCCGTCTGTACACTGAGGGGGCTTTTAAGAAGGAACTC
ATCGACCAGACATACCCCGAGATTCTGCGCTCGAACCTTTCTTCTACCGT
GCTGGAATTGAAGAAGCTAGGCATTGATGATCTTGTTCACTTCGATCTGA
TGGATCCTCCCGCTCCGGAGACTTTGATGAGAGCTTTGGAAGAGCTCAAC
TATCTAGCTTGCTTGGACGATGATGGAAACCTCACTCAGCTGGGACGCCT
GGCCTCCGAGTTCCCCCTTGATCCCGCACTTGCTGTGATGCTGATCAGCT
CCCCCGAATTTTACTGCTCCAACGAAATTCTTTCTATCACAGCCCTGCTT
TCCGTCCCGCAAGTCTTCGTCAGACCTGCTTCTCAGCGGAAGCGTGCTGA
TGAGATGAAGGATCTTTTTGCCCACCCTGACGGTGACCACCTTACCCTTC
TCAATGTCTACCATGCTTTTAAGAGCCCTGAAGCGCAGGAGAACTTGAAG
CAATGGTGTCACGACCACTTCCTCTCTCTTAGATCGCTGCAATCGGCAGA
CAACGTGCGCATGCAGCTTCTGCGCATCATGGAACGTGAGGAACTCGAGA
TGGTGTCCACCCCCTTCGAGGACAAGAAATATTACGAAAACATCCGCCGT
GCGCTGTGCGCAGGCTTCTTCATGCAGGTCGCCAAGAAGGAGACTCAGGG
CAAGAACATGTATGTCACGATCAAGGACAACCAGAACGTTCTTTTGCACC
CCTCGACCGTCTTGGGCCACGAAGCGGAATGGGTTCTCTACAACGAATTC
GTCCTCACCACCAAGAATTACATTCGGACTGTCACGGCTGTCAAGCCCGA
ATGGCTCATTATGGTTGATCGACGCTCGGATTCTGAAAACGGTTCGCGTG
CTAAACGTCAAAAGATGGACAAGTCTGAAACCGATCCCAAGGACAATCCG
TACCTGGCTCACATGTATGCGGACGGCAACTCCAACACAGGGACCGATGG
CACCACAGATCTTCACCCCGCCTTTGGGAAGATGAAGAGGCACCAGACCA
CCGCTGCGATGGCTAAGAAGGTGGAAGATGGTGATATCAACCCGTTCAAC
GGTCAACCTTTCTCCAGCAAATATGTTTCCATCCTGCAGACTCGTCGCGA
CCTGCCCGTGCATGCTCAGAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005524 | ATP binding |
| GO:0003676 | nucleic acid binding |
| GO:0004386 | helicase activity |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| DBxref | InterPro:IPR027417 |
| DBxref | InterPro:IPR002464 |
| DBxref | InterPro:IPR011545 |
| DBxref | InterPro:IPR011709 |
| DBxref | InterPro:IPR014001 |
| DBxref | InterPro:IPR001650 |
| DBxref | InterPro:IPR007502 |
| DBxref | PFAM:PF07717 |
| DBxref | PFAM:PF00271 |
| DBxref | PFAM:PF04408 |
| DBxref | PFAM:PF00270 |
| Product | DEAH-box ATP-dependent RNA helicase prp43 |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000022.1 | supercontig | NKJJ01000022.1:720890..723325 - |
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