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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000022.1:749597..750965+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_43450-T1 ID=CAN33_43450-T1|Name=CAN33_43450-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1369bp|location=Sequence derived from alignment at NKJJ01000022.1:749597..750965+ (Aspergillus niger FDAARGOS_311)
ATGCCTCTTCTGCAGCTTCTCGCGTGCGGCCTCCGCCGGCCTCGCGTGCC
TAGTCGCCAGTTCCACTTGTCATCGATACAGCTCTCCGATCGGAAACCGA
AGGTCCCAGAAGTCAACAAGGCCCCCGAAGGAAAGACCCTGGATGAAATC
TACCGGGAAGTGAAGCTCGACGACTTCAAGCACTATACCGAGGAGGAAAA
GGCCGCCCTCCGGGAAGAATACTCGCCCGAACAGATTGCCGCCATTGAGG
CCGGTGAGAAGGCCATTGACCCCAAAGACCTGGCTGAACAGTTCCGTCTT
CGTCGGGATCCCATGAGATTGAAGTATCTCGATGATTTCTCGGTCATTGA
ACCCGGCGTGGACAAGCACGTTCGCGCCCCCAAGTCCAACTCCGACTACA
ACGCGACATTCAAGACCGAGGATGATTTCATGGAAGACTTTGCCCGCTTC
TTCGCCGAATCATCGGAGGATCCCCAGCCGGCAGATTTCGTACGATTCCT
CGAGACCACCCGGGTGACTCACGGCAAGGAGGAGAACGAGCTCAACGGAC
ACAGCGCGCTCGCACCCAATCTCTTGAACGATGGGGAGACCTTGGAACAC
ATGGGCGACGAGGTGGTGGCGAGGCCGCAATACCGCACAAAGACTGGAGA
GCTTACGTTCTTGAACCCCGACGAACCCAACGAGGCGGAGAAGAGACTTT
TCCAGGTCACGGGCTTCGGTAGAGATTACCTCAAGTCTCTGTACATAAAG
GACCTCGTTATTCGCCGTGTCAGCAACCAGACTCGACTGGGTAAGGTCCC
GAGTATGTCCGTCGTTACGGTCGCCGGTAACCAGAACGGTCTTATGGGTA
TCGGAATCGCCAAGTCCGATGAAATTATCGATGCCTGCCAACAAGCTCGC
GCTCGGGCTGTCAAGAACATGCAACCTGTGCCGCGCTACGAGAAGCGGAC
CATCTTCGGTGACGTCGAGGGCAAGGTCGGAGCTGTGCAGTTGAAGTTGA
TGCACCGTCCCCCAGGTACGATTGTCCGAACCCTGAAATGTTATTTCAAC
GCTAATGCTTAATGTTCCCACAGGTTTCGGTCTCCGCTGCCAGCACCTGA
TCTTCGAAATGTGCCGTGCGGCCGGTATTCACGATATCGCAGCCCGTGTC
AACCGCTCCAGAAACCCCATGAACACAGTTAAGGCAGCCTACGAGGCGCT
CATGAGCCAGCGCAACCCCGAGGATATTGCCCGTGCCCGGGGTAAGAAGA
TGGTCGATGTACGGGGAGTGTACTATTCCGGAAGAGGCATTCAACAGGAC
ATGTATGCTCGCCCGGTTCGTGATCGGGAACATCGTGAGCGGCCGTCCCG
GGAAGCTCGGCGAGCTTGA back to topCoding sequence (CDS) from alignment at NKJJ01000022.1:749597..750965+ >CAN33_43450-T1 ID=CAN33_43450-T1|Name=CAN33_43450-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2622bp|location=Sequence derived from alignment at NKJJ01000022.1:749597..750965+ (Aspergillus niger FDAARGOS_311)
ATGCCTCTTCTGCAGCTTCTCGCGTGCGGCCTCCGCCGGCCTCGCGTGCC
TAGTCGCCAGTTCCACTTGTCATCGATACAGCTCTCCGATCGGAAACCGA
AGGTCCCAGAAGTCAACAAGGCCCCCGAAGGAAAGACCCTGGATGAAATC
TACCGGGAAGTGAAGCTCGACGACTTCAAGCACTATACCGAGGAGGAAAA
GGCCGCCCTCCGGGAAGAATACTCGCCCGAACAGATTGCCGCCATTGAGG
CCGGTGAGAAGGCCATTGACCCCAAAGACCTGGCTGAACAGTTCCGTCTT
CGTCGGGATCCCATGAGATTGAAGTATCTCGATGATTTCTCGGTCATTGA
ACCCGGCGTGGACAAGCACGTTCGCGCCCCCAAGTCCAACTCCGACTACA
ACGCGACATTCAAGACCGAGGATGATTTCATGGAAGACTTTGCCCGCTTC
TTCGCCGAATCATCGGAGGATCCCCAGCCGGCAGATTTCGTACGATTCCT
CGAGACCACCCGGGTGACTCACGGCAAGGAGGAGAACGAGCTCAACGGAC
ACAGCGCGCTCGCACCCAATCTCTTGAACGATGGGGAGACCTTGGAACAC
ATGGGCGACGAGGTGGTGGCGAGGCCGCAATACCGCACAAAGACTGGAGA
GCTTACGTTCTTGAACCCCGACGAACCCAACGAGGCGGAGAAGAGACTTT
TCCAGGTCACGGGCTTCGGTAGAGATTACCTCAAGTCTCTGTACATAAAG
GACCTCGTTATTCGCCGTGTCAGCAACCAGACTCGACTGGGTAAGGTCCC
GAGTATGTCCGTCGTTACGGTCGCCGGTAACCAGAACGGTCTTATGGGTA
TCGGAATCGCCAAGTCCGATGAAATTATCGATGCCTGCCAACAAGCTCGC
GCTCGGGCTGTCAAGAACATGCAACCTGTGCCGCGCTACGAGAAGCGGAC
CATCTTCGGTGACGTCGAGGGCAAGGTCGGAGCTGTGCAGTTGAAGTTGA
TGCACCGTCCCCCAGGTTTCGGTCTCCGCTGCCAGCACCTGATCTTCGAA
ATGTGCCGTGCGGCCGGTATTCACGATATCGCAGCCCGTGTCAACCGCTC
CAGAAACCCCATGAACACAGTTAAGGCAGCCTACGAGGCGCTCATGAGCC
AGCGCAACCCCGAGGATATTGCCCGTGCCCGGGGTAAGAAGATGGTCGAT
GTACGGGGAGTGTACTATTCCGGAAGAGGCATTCAACAGGACATGTATGC
TCGCCCGGTTCGTGATCGGGAACATCGTGAGCGGCCGTCCCGGGAAGCTC
GGCGAGCTTGAATGCCTCTTCTGCAGCTTCTCGCGTGCGGCCTCCGCCGG
CCTCGCGTGCCTAGTCGCCAGTTCCACTTGTCATCGATACAGCTCTCCGA
TCGGAAACCGAAGGTCCCAGAAGTCAACAAGGCCCCCGAAGGAAAGACCC
TGGATGAAATCTACCGGGAAGTGAAGCTCGACGACTTCAAGCACTATACC
GAGGAGGAAAAGGCCGCCCTCCGGGAAGAATACTCGCCCGAACAGATTGC
CGCCATTGAGGCCGGTGAGAAGGCCATTGACCCCAAAGACCTGGCTGAAC
AGTTCCGTCTTCGTCGGGATCCCATGAGATTGAAGTATCTCGATGATTTC
TCGGTCATTGAACCCGGCGTGGACAAGCACGTTCGCGCCCCCAAGTCCAA
CTCCGACTACAACGCGACATTCAAGACCGAGGATGATTTCATGGAAGACT
TTGCCCGCTTCTTCGCCGAATCATCGGAGGATCCCCAGCCGGCAGATTTC
GTACGATTCCTCGAGACCACCCGGGTGACTCACGGCAAGGAGGAGAACGA
GCTCAACGGACACAGCGCGCTCGCACCCAATCTCTTGAACGATGGGGAGA
CCTTGGAACACATGGGCGACGAGGTGGTGGCGAGGCCGCAATACCGCACA
AAGACTGGAGAGCTTACGTTCTTGAACCCCGACGAACCCAACGAGGCGGA
GAAGAGACTTTTCCAGGTCACGGGCTTCGGTAGAGATTACCTCAAGTCTC
TGTACATAAAGGACCTCGTTATTCGCCGTGTCAGCAACCAGACTCGACTG
GGTAAGGTCCCGAGTATGTCCGTCGTTACGGTCGCCGGTAACCAGAACGG
TCTTATGGGTATCGGAATCGCCAAGTCCGATGAAATTATCGATGCCTGCC
AACAAGCTCGCGCTCGGGCTGTCAAGAACATGCAACCTGTGCCGCGCTAC
GAGAAGCGGACCATCTTCGGTGACGTCGAGGGCAAGGTCGGAGCTGTGCA
GTTGAAGTTGATGCACCGTCCCCCAGGTTTCGGTCTCCGCTGCCAGCACC
TGATCTTCGAAATGTGCCGTGCGGCCGGTATTCACGATATCGCAGCCCGT
GTCAACCGCTCCAGAAACCCCATGAACACAGTTAAGGCAGCCTACGAGGC
GCTCATGAGCCAGCGCAACCCCGAGGATATTGCCCGTGCCCGGGGTAAGA
AGATGGTCGATGTACGGGGAGTGTACTATTCCGGAAGAGGCATTCAACAG
GACATGTATGCTCGCCCGGTTCGTGATCGGGAACATCGTGAGCGGCCGTC
CCGGGAAGCTCGGCGAGCTTGA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003735 | structural constituent of ribosome |
| GO:0003723 | RNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG092634G9 |
| DBxref | InterPro:IPR020568 |
| DBxref | InterPro:IPR014721 |
| DBxref | InterPro:IPR005324 |
| DBxref | InterPro:IPR013810 |
| DBxref | PFAM:PF03719 |
| DBxref | PFAM:PF00333 |
| Product | Ribosomal protein S5 C-terminal domain family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000022.1 | supercontig | NKJJ01000022.1:749597..750965 + |
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