You are here

Home

CAN33_43730-T1, CAN33_43730-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_43730-T1
Unique NameCAN33_43730-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000022.1:919344..920325+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_43730-T1 ID=CAN33_43730-T1|Name=CAN33_43730-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=982bp|location=Sequence derived from alignment at NKJJ01000022.1:919344..920325+ (Aspergillus niger FDAARGOS_311)
ATGGACCCCCCGCTCGCGAAGCTCATCATCACGGCCGCAGAAACCTACGG
CTGCAGCGAGGAAATGCTAACCATCGTATCTATGCTATCCGTCCCCAGCG
TCTTCTACCGTCCCAGAGAGCGACAAGAAGAATCCGACGCCGCGCGCGAG
AAATTCTTCGTCCCAGAATCCGACCACCTCACTTTACTCCACGTGTACAC
GCAATGGAAAGCAAACGGCTACTCCGACGGCTGGTGCACACGCCACTTCC
TCCACGCCAAGGCACTGCGGCGGGCGCGCGAAGTCCGCGACCAGCTGCAC
GACATCATGACGGTGCAGAAGATGCCCTTGGTCAGTTGCGGCACTGACTG
GGACGAGATCCGCAAATGCATCTGCTCGGGTTTCTACCACCAAGCCGCGC
GCGTCAAGGGTATCGGCGAGTTCCTCAACCTCCGAACCAGCGTCAGCATG
CAACTCCACCCGACCAGTGCTCTCTACGGTCTGGGATATGTCCCGGAGTA
CGTGGTCTACCACGAATTGATCCTCACCAGCAAGGAGTACATGTCTACCG
TGACTGCTGTAGATCCACATGTAAGGTCCCCACCCTATCCCATATACAAT
AAATACTAACGACATCCGGTAATAGTGGCTCGCCGAACTCGGAGGTGTCT
TCTACTCCGTCAAAGAAAAGGGATATTCTCAGCGCGAGCGCCGCATCACC
GAACAAGAGTTCAACCGGCGCGTGGAGATCGAGACTCAGATGGCGGCGGA
CCGCGAACGCGCCGCAGCCGAGAAGCAGCGCGAGGCGGAGAGGAACGATC
CATCCAGACGCAGAAAGGAGATTGAAGTGGGGTCTGTTGTGCGGAGGCCT
GTCGCGACAGCAAGACGTGTAGGGGGTGTGACGGCCTCGAGTAGTGGTGG
TGGTGCGCGCAACGGTGGAAGTGGAGGCGGAAGCGTGGTTAAGAAGCCGC
AGATTAAGCGGAAACCAGGACGGGCCTTTTGA
back to top

Coding sequence (CDS) from alignment at NKJJ01000022.1:919344..920325+

>CAN33_43730-T1 ID=CAN33_43730-T1|Name=CAN33_43730-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1854bp|location=Sequence derived from alignment at NKJJ01000022.1:919344..920325+ (Aspergillus niger FDAARGOS_311)
ATGGACCCCCCGCTCGCGAAGCTCATCATCACGGCCGCAGAAACCTACGG
CTGCAGCGAGGAAATGCTAACCATCGTATCTATGCTATCCGTCCCCAGCG
TCTTCTACCGTCCCAGAGAGCGACAAGAAGAATCCGACGCCGCGCGCGAG
AAATTCTTCGTCCCAGAATCCGACCACCTCACTTTACTCCACGTGTACAC
GCAATGGAAAGCAAACGGCTACTCCGACGGCTGGTGCACACGCCACTTCC
TCCACGCCAAGGCACTGCGGCGGGCGCGCGAAGTCCGCGACCAGCTGCAC
GACATCATGACGGTGCAGAAGATGCCCTTGGTCAGTTGCGGCACTGACTG
GGACGAGATCCGCAAATGCATCTGCTCGGGTTTCTACCACCAAGCCGCGC
GCGTCAAGGGTATCGGCGAGTTCCTCAACCTCCGAACCAGCGTCAGCATG
CAACTCCACCCGACCAGTGCTCTCTACGGTCTGGGATATGTCCCGGAGTA
CGTGGTCTACCACGAATTGATCCTCACCAGCAAGGAGTACATGTCTACCG
TGACTGCTGTAGATCCACATTGGCTCGCCGAACTCGGAGGTGTCTTCTAC
TCCGTCAAAGAAAAGGGATATTCTCAGCGCGAGCGCCGCATCACCGAACA
AGAGTTCAACCGGCGCGTGGAGATCGAGACTCAGATGGCGGCGGACCGCG
AACGCGCCGCAGCCGAGAAGCAGCGCGAGGCGGAGAGGAACGATCCATCC
AGACGCAGAAAGGAGATTGAAGTGGGGTCTGTTGTGCGGAGGCCTGTCGC
GACAGCAAGACGTGTAGGGGGTGTGACGGCCTCGAGTAGTGGTGGTGGTG
CGCGCAACGGTGGAAGTGGAGGCGGAAGCGTGGTTAAGAAGCCGCAGATT
AAGCGGAAACCAGGACGGGCCTTTTGAATGGACCCCCCGCTCGCGAAGCT
CATCATCACGGCCGCAGAAACCTACGGCTGCAGCGAGGAAATGCTAACCA
TCGTATCTATGCTATCCGTCCCCAGCGTCTTCTACCGTCCCAGAGAGCGA
CAAGAAGAATCCGACGCCGCGCGCGAGAAATTCTTCGTCCCAGAATCCGA
CCACCTCACTTTACTCCACGTGTACACGCAATGGAAAGCAAACGGCTACT
CCGACGGCTGGTGCACACGCCACTTCCTCCACGCCAAGGCACTGCGGCGG
GCGCGCGAAGTCCGCGACCAGCTGCACGACATCATGACGGTGCAGAAGAT
GCCCTTGGTCAGTTGCGGCACTGACTGGGACGAGATCCGCAAATGCATCT
GCTCGGGTTTCTACCACCAAGCCGCGCGCGTCAAGGGTATCGGCGAGTTC
CTCAACCTCCGAACCAGCGTCAGCATGCAACTCCACCCGACCAGTGCTCT
CTACGGTCTGGGATATGTCCCGGAGTACGTGGTCTACCACGAATTGATCC
TCACCAGCAAGGAGTACATGTCTACCGTGACTGCTGTAGATCCACATTGG
CTCGCCGAACTCGGAGGTGTCTTCTACTCCGTCAAAGAAAAGGGATATTC
TCAGCGCGAGCGCCGCATCACCGAACAAGAGTTCAACCGGCGCGTGGAGA
TCGAGACTCAGATGGCGGCGGACCGCGAACGCGCCGCAGCCGAGAAGCAG
CGCGAGGCGGAGAGGAACGATCCATCCAGACGCAGAAAGGAGATTGAAGT
GGGGTCTGTTGTGCGGAGGCCTGTCGCGACAGCAAGACGTGTAGGGGGTG
TGACGGCCTCGAGTAGTGGTGGTGGTGCGCGCAACGGTGGAAGTGGAGGC
GGAAGCGTGGTTAAGAAGCCGCAGATTAAGCGGAAACCAGGACGGGCCTT
TTGA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0004386helicase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PRP16CAN33_43730Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_43730-T1.exon1CAN33_43730-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_43730-T1.exon2CAN33_43730-T1.exon2Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_43730-T1.cdsCAN33_43730-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_43730-T1CAN33_43730-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR011709
DBxrefInterPro:IPR007502
DBxrefPFAM:PF07717
DBxrefPFAM:PF04408
ProductDEAH-box RNA helicase prp16
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000022.1supercontigNKJJ01000022.1:919344..920325 +
Powered by Drupal