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CAN33_44780-T1, CAN33_44780-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_44780-T1
Unique NameCAN33_44780-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000022.1:1567163..1568072-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_44780-T1 ID=CAN33_44780-T1|Name=CAN33_44780-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=910bp|location=Sequence derived from alignment at NKJJ01000022.1:1567163..1568072- (Aspergillus niger FDAARGOS_311)
ATGCTTGCACCCACAGCTTTACGGCAAACTGCCGAAGTAGCAATGGCAGA
GACGCCTGTTGCGCCTACTATGTCAGGTCAGTCCCCGCCAGCGCTTTACG
GGAACCCGACTGGGTGGCCATCCTAACGTCCATTAGAGCAAGATGAGGAA
ATTTTGATCGACGCCCAAACGTCGGCAGATCAGGTCTCTGCAGGACTCGC
GCCTGAGATTGAGCCTACTCAAGACAGCGATATGCGTATTGACGAAGAGG
GACGGCCCCTCTTCACACCAGCAAAAGACACTAGCAGGGTATATCGAGTT
GAAAGCAGGAAGGTTCCTGTACCACCGCATAGGATGACTCCATTGAAGGC
TAGCTGGGCACGCATCTATCCCCCGCTTGTCGAACACCTCAAACTTCAAG
TGCGGATGAACATCAAGAACCGAGCTGTGGAGCTACGTACGTCACGATTC
ACGACCGATACGGAAGCCCTGCAGAAGGGCGAGGACTTCGTCAAAGCTTT
TACTCTTGGATTTGATGTCGACGACGCTATCGCACTTCTCAGATTGGATG
ATCTTTACATACGTTCATTCGAGATTCGGGATATCAAAGCCCTTAACGGA
GAGCACCTCAGTCGTGCAATTGGACGCTGTGCTGGTAAAGATGGGCGAAC
AAAGTTTGCTATAGAGAACGCTACTCGGACAAGAATCGTCATTGCAGACC
AGAAGATTCACTTGCTAGGCGCAGTGAAGAATGTCGACTGTGCCCAGCAG
GCCATTGTTAGCTTGATTCTTGGCAGTCCACCGGTCAGTAACCTTGTGCC
AATCCTTTCTATTGTCGTTTCAGAAGATGCAACATCTGCTAACTCCTCAA
TAGGGCAAAGTGTATGGGAACCTTCGTAAGGTGGCTTCTCGCATGAAGGA
GCGTTTTTAA
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Coding sequence (CDS) from alignment at NKJJ01000022.1:1567163..1568072-

>CAN33_44780-T1 ID=CAN33_44780-T1|Name=CAN33_44780-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2340bp|location=Sequence derived from alignment at NKJJ01000022.1:1567163..1568072- (Aspergillus niger FDAARGOS_311)
GGCAAAGTGTATGGGAACCTTCGTAAGGTGGCTTCTCGCATGAAGGAGCG
TTTTTAAAGCAAGATGAGGAAATTTTGATCGACGCCCAAACGTCGGCAGA
TCAGGTCTCTGCAGGACTCGCGCCTGAGATTGAGCCTACTCAAGACAGCG
ATATGCGTATTGACGAAGAGGGACGGCCCCTCTTCACACCAGCAAAAGAC
ACTAGCAGGGTATATCGAGTTGAAAGCAGGAAGGTTCCTGTACCACCGCA
TAGGATGACTCCATTGAAGGCTAGCTGGGCACGCATCTATCCCCCGCTTG
TCGAACACCTCAAACTTCAAGTGCGGATGAACATCAAGAACCGAGCTGTG
GAGCTACGTACGTCACGATTCACGACCGATACGGAAGCCCTGCAGAAGGG
CGAGGACTTCGTCAAAGCTTTTACTCTTGGATTTGATGTCGACGACGCTA
TCGCACTTCTCAGATTGGATGATCTTTACATACGTTCATTCGAGATTCGG
GATATCAAAGCCCTTAACGGAGAGCACCTCAGTCGTGCAATTGGACGCTG
TGCTGGTAAAGATGGGCGAACAAAGTTTGCTATAGAGAACGCTACTCGGA
CAAGAATCGTCATTGCAGACCAGAAGATTCACTTGCTAGGCGCAGTGAAG
AATGTCGACTGTGCCCAGCAGGCCATTGTTAGCTTGATTCTTGGCAGTCC
ACCGATGCTTGCACCCACAGCTTTACGGCAAACTGCCGAAGTAGCAATGG
CAGAGACGCCTGTTGCGCCTACTATGTCAGGGCAAAGTGTATGGGAACCT
TCGTAAGGTGGCTTCTCGCATGAAGGAGCGTTTTTAAAGCAAGATGAGGA
AATTTTGATCGACGCCCAAACGTCGGCAGATCAGGTCTCTGCAGGACTCG
CGCCTGAGATTGAGCCTACTCAAGACAGCGATATGCGTATTGACGAAGAG
GGACGGCCCCTCTTCACACCAGCAAAAGACACTAGCAGGGTATATCGAGT
TGAAAGCAGGAAGGTTCCTGTACCACCGCATAGGATGACTCCATTGAAGG
CTAGCTGGGCACGCATCTATCCCCCGCTTGTCGAACACCTCAAACTTCAA
GTGCGGATGAACATCAAGAACCGAGCTGTGGAGCTACGTACGTCACGATT
CACGACCGATACGGAAGCCCTGCAGAAGGGCGAGGACTTCGTCAAAGCTT
TTACTCTTGGATTTGATGTCGACGACGCTATCGCACTTCTCAGATTGGAT
GATCTTTACATACGTTCATTCGAGATTCGGGATATCAAAGCCCTTAACGG
AGAGCACCTCAGTCGTGCAATTGGACGCTGTGCTGGTAAAGATGGGCGAA
CAAAGTTTGCTATAGAGAACGCTACTCGGACAAGAATCGTCATTGCAGAC
CAGAAGATTCACTTGCTAGGCGCAGTGAAGAATGTCGACTGTGCCCAGCA
GGCCATTGTTAGCTTGATTCTTGGCAGTCCACCGATGCTTGCACCCACAG
CTTTACGGCAAACTGCCGAAGTAGCAATGGCAGAGACGCCTGTTGCGCCT
ACTATGTCAGGGCAAAGTGTATGGGAACCTTCGTAAGGTGGCTTCTCGCA
TGAAGGAGCGTTTTTAAAGCAAGATGAGGAAATTTTGATCGACGCCCAAA
CGTCGGCAGATCAGGTCTCTGCAGGACTCGCGCCTGAGATTGAGCCTACT
CAAGACAGCGATATGCGTATTGACGAAGAGGGACGGCCCCTCTTCACACC
AGCAAAAGACACTAGCAGGGTATATCGAGTTGAAAGCAGGAAGGTTCCTG
TACCACCGCATAGGATGACTCCATTGAAGGCTAGCTGGGCACGCATCTAT
CCCCCGCTTGTCGAACACCTCAAACTTCAAGTGCGGATGAACATCAAGAA
CCGAGCTGTGGAGCTACGTACGTCACGATTCACGACCGATACGGAAGCCC
TGCAGAAGGGCGAGGACTTCGTCAAAGCTTTTACTCTTGGATTTGATGTC
GACGACGCTATCGCACTTCTCAGATTGGATGATCTTTACATACGTTCATT
CGAGATTCGGGATATCAAAGCCCTTAACGGAGAGCACCTCAGTCGTGCAA
TTGGACGCTGTGCTGGTAAAGATGGGCGAACAAAGTTTGCTATAGAGAAC
GCTACTCGGACAAGAATCGTCATTGCAGACCAGAAGATTCACTTGCTAGG
CGCAGTGAAGAATGTCGACTGTGCCCAGCAGGCCATTGTTAGCTTGATTC
TTGGCAGTCCACCGATGCTTGCACCCACAGCTTTACGGCAAACTGCCGAA
GTAGCAATGGCAGAGACGCCTGTTGCGCCTACTATGTCAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003723RNA binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
PNO1CAN33_44780Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_44780-T1CAN33_44780-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_44780-T1.cdsCAN33_44780-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_44780-T1.exon3CAN33_44780-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_44780-T1.exon2CAN33_44780-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_44780-T1.exon1CAN33_44780-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteBUSCO:EOG09264SQJ
DBxrefInterPro:IPR036612
Productpre-rRNA-processing protein pno1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000022.1supercontigNKJJ01000022.1:1567163..1568072 -
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