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CAN33_45225-T1, CAN33_45225-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_45225-T1
Unique NameCAN33_45225-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000022.1:1894151..1894967+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_45225-T1 ID=CAN33_45225-T1|Name=CAN33_45225-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=817bp|location=Sequence derived from alignment at NKJJ01000022.1:1894151..1894967+ (Aspergillus niger FDAARGOS_311)
ATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCATCCCCGACAG
AGCCCCCGTACGCATCCCCTCATCCCTTATCGCATCCTCGCAGGTTGACC
TGTCTGCTGACTTGTACTCGCTAGGACCTCCCAGCCAAGGTGCGCACTAT
TGCTCCATCCCTCTTGATCCTCCTCTCTGTCTTTCAATCCCCCGTTCTCG
ATTGACCCGCGCACAGTTCCGGAAACTCCTGACGCCAGGCAAGATCGGCC
AGATCCTCTGTCTCGGCAATCTCACCGATCGGAGCACTTTCGAATTCCTC
CGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGGCGACTTCGATGTCGA
TTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTCACGGGAGTCTCCGCA
TCGGATTTACTCATGGCCACACCATCATCCCGCCGGGGGACGCCGATGCC
CTTCTGATCGCTGCCCGCCAGATGGATGTTGACATACTGCTATGGGGTGG
AACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAAGGTTCTTTATCAACC
CGGGAAGTGCCACCGGTGCCATGAGCACGGGGTACTGGCCGGAAGGGGAA
GAGCCGACACCTAGTTTCTGTTTGATGGATGTAAGTCGCGCAACTCCACG
GGGTTCGCTGCAAGACTCGGTACGTGCTCTATGCTAACACAGGATTATAG
ATCCAAGGCGATGTCCTCGTGTTGTATGTTTACCAACTGAAGACGGACGC
CGACGGGGCTGAGACGGTCGCGGTCGAGAAAGTATCTTACCGCAAGAACA
ATATCCCTTCTTCATGA
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Coding sequence (CDS) from alignment at NKJJ01000022.1:1894151..1894967+

>CAN33_45225-T1 ID=CAN33_45225-T1|Name=CAN33_45225-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2412bp|location=Sequence derived from alignment at NKJJ01000022.1:1894151..1894967+ (Aspergillus niger FDAARGOS_311)
ATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCATCCCCGACAG
AGCCCCCGACCTCCCAGCCAAGTTCCGGAAACTCCTGACGCCAGGCAAGA
TCGGCCAGATCCTCTGTCTCGGCAATCTCACCGATCGGAGCACTTTCGAA
TTCCTCCGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGGCGACTTCGA
TGTCGATTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTCACGGGAGTC
TCCGCATCGGATTTACTCATGGCCACACCATCATCCCGCCGGGGGACGCC
GATGCCCTTCTGATCGCTGCCCGCCAGATGGATGTTGACATACTGCTATG
GGGTGGAACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAAGGTTCTTTA
TCAACCCGGGAAGTGCCACCGGTGCCATGAGCACGGGGTACTGGCCGGAA
GGGGAAGAGCCGACACCTAGTTTCTGTTTGATGGATATCCAAGGCGATGT
CCTCGTGTTGTATGTTTACCAACTGAAGACGGACGCCGACGGGGCTGAGA
CGGTCGCGGTCGAGAAAGTATCTTACCGCAAGAACAATATCCCTTCTTCA
TGAATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCATCCCCGA
CAGAGCCCCCGACCTCCCAGCCAAGTTCCGGAAACTCCTGACGCCAGGCA
AGATCGGCCAGATCCTCTGTCTCGGCAATCTCACCGATCGGAGCACTTTC
GAATTCCTCCGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGGCGACTT
CGATGTCGATTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTCACGGGA
GTCTCCGCATCGGATTTACTCATGGCCACACCATCATCCCGCCGGGGGAC
GCCGATGCCCTTCTGATCGCTGCCCGCCAGATGGATGTTGACATACTGCT
ATGGGGTGGAACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAAGGTTCT
TTATCAACCCGGGAAGTGCCACCGGTGCCATGAGCACGGGGTACTGGCCG
GAAGGGGAAGAGCCGACACCTAGTTTCTGTTTGATGGATATCCAAGGCGA
TGTCCTCGTGTTGTATGTTTACCAACTGAAGACGGACGCCGACGGGGCTG
AGACGGTCGCGGTCGAGAAAGTATCTTACCGCAAGAACAATATCCCTTCT
TCATGAATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCATCCC
CGACAGAGCCCCCGACCTCCCAGCCAAGTTCCGGAAACTCCTGACGCCAG
GCAAGATCGGCCAGATCCTCTGTCTCGGCAATCTCACCGATCGGAGCACT
TTCGAATTCCTCCGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGGCGA
CTTCGATGTCGATTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTCACG
GGAGTCTCCGCATCGGATTTACTCATGGCCACACCATCATCCCGCCGGGG
GACGCCGATGCCCTTCTGATCGCTGCCCGCCAGATGGATGTTGACATACT
GCTATGGGGTGGAACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAAGGT
TCTTTATCAACCCGGGAAGTGCCACCGGTGCCATGAGCACGGGGTACTGG
CCGGAAGGGGAAGAGCCGACACCTAGTTTCTGTTTGATGGATATCCAAGG
CGATGTCCTCGTGTTGTATGTTTACCAACTGAAGACGGACGCCGACGGGG
CTGAGACGGTCGCGGTCGAGAAAGTATCTTACCGCAAGAACAATATCCCT
TCTTCATGAATGACTTCCCGCCTGGTTCTGGTCATTGGTGACCTCTTCAT
CCCCGACAGAGCCCCCGACCTCCCAGCCAAGTTCCGGAAACTCCTGACGC
CAGGCAAGATCGGCCAGATCCTCTGTCTCGGCAATCTCACCGATCGGAGC
ACTTTCGAATTCCTCCGACAGGTCGCTCCAGACTTGCAATTGGTCAAAGG
CGACTTCGATGTCGATTCCCCCAACCTACCCCTCTCTAAAGTGGTGACTC
ACGGGAGTCTCCGCATCGGATTTACTCATGGCCACACCATCATCCCGCCG
GGGGACGCCGATGCCCTTCTGATCGCTGCCCGCCAGATGGATGTTGACAT
ACTGCTATGGGGTGGAACCCACCGCTTTGAAGCTTTTGAACTGGAGGGAA
GGTTCTTTATCAACCCGGGAAGTGCCACCGGTGCCATGAGCACGGGGTAC
TGGCCGGAAGGGGAAGAGCCGACACCTAGTTTCTGTTTGATGGATATCCA
AGGCGATGTCCTCGTGTTGTATGTTTACCAACTGAAGACGGACGCCGACG
GGGCTGAGACGGTCGCGGTCGAGAAAGTATCTTACCGCAAGAACAATATC
CCTTCTTCATGA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0030904retromer complex
Vocabulary: Biological Process
TermDefinition
GO:0042147retrograde transport, endosome to Golgi
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_45225CAN33_45225Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_45225-T1.exon1CAN33_45225-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_45225-T1.exon2CAN33_45225-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_45225-T1.exon3CAN33_45225-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_45225-T1.exon4CAN33_45225-T1.exon4Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_45225-T1.cdsCAN33_45225-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_45225-T1CAN33_45225-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteBUSCO:EOG092640ZF
DBxrefInterPro:IPR028661
DBxrefInterPro:IPR024654
DBxrefInterPro:IPR000979
DBxrefInterPro:IPR029052
DBxrefPFAM:PF12850
Productphosphodiesterase MJ0936 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000022.1supercontigNKJJ01000022.1:1894151..1894967 +
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