You are here

Home

CAN33_4645-T1, CAN33_4645-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_4645-T1
Unique NameCAN33_4645-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000019.1:568075..569760+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_4645-T1 ID=CAN33_4645-T1|Name=CAN33_4645-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1686bp|location=Sequence derived from alignment at NKJJ01000019.1:568075..569760+ (Aspergillus niger FDAARGOS_311)
ATGGCTGCCAACGGCGACTTCTCTGACGACGAGTCCCAGCCTGGATCCCC
CATGCTCGATGCGAACGGTCACGATGACATCGAAGAGCAAGAGCCCCTCG
ACCAGGAGGCCAAGCCTCTGAAGTCTGCGATGAAGAAGGAAGTTCCTCCT
CCCCAGCCCAAGCGGCCAGAGCTGCCCGAGCAGCCGAATCCGGAGACTCT
GGACCTGTCCACCCTGACTCCTTTGACCCCCGAAATTATTGCGCGCCAAG
CCACAATCAACATTGGCACCATCGGTCACGTCGCTCACGGCAAGTCGACG
GTCGTTAAGGCTATCTCCGAGGTCCAGACTGTCCGTTTCAAGAACGAGTT
GGAGCGAAACATTACGATCAAGCTGGGTTATGCCAACGCAAAGATCTACA
AGTGCGACAACCCCGAGTGCCCTAGGCCGACATGCTTTAAGAGCTTTAAG
AGTGAGAAGGAAGTCGACCCGCCTTGTGAGAGGGATGGCTGCGGTGGCCG
CTACAGACTGTTGAGACATGTGTCGTACGTTGAACCTCGGACTCAAGTGT
GGACAAATTCTTCAGTGCTAACTCAGAGACCCAACTTAGTTTCGTCGACT
GCCCCGGTCACGATATTCTGATGAGTACTATGTTGTCTGGTGCCGCCGTC
ATGGACGCTGCCCTCCTCCTTATTGCCGGAAACGAAACTTGCCCTCAACC
TCAGACTTCGGAGCACTTGGCTGCCATCGAAATCATGAAGCTCAGCCACA
TCATCATTTTGCAAAACAAGGTGGACTTGATGAGAGAGGATGGTGCCCTG
CAACATTACCAGTCGATCTTGAAGTTCATCCGTGGTACTGTCGCCGATGG
CTCTCCGATCATTCCCATTTCTGCACAGCTCAAGTACAACATCGATGCTG
TCAACGAATACCTGGTTTCGCACATTCCCGTCCCCGTCCGCGATTTCACC
GCTTCCCCCCACATGATCGTCATTCGTTCCTTCGATGTGAACAAGCCTGG
TGCCGAAATTGAGGAGCTGAAGGGTGGTGTTGCCGGTGGTTCGATCTTGA
CTGGTGTTCTGAAGCAGAACGACGAGATTGAGATTCGTCCCGGTCTGGTC
ACCAAGGACGAGAACGGCAAGATTCAGTGCCGTCCCATCTTCTCTCGGGT
CATGTCCCTCTTTGCCGAGCACAACGACCTCAAGTTTGCCGTCCCTGGTG
GTTTGATTGGTGTCGGTACTCGTGTAGACCCTACTCTGTGCCGTGCTGAT
CGTCTCGTTGGTTTCGTCCTGGGTCACCGCGGACGCCTTCCCGCTATCTA
CACTGAGTTGGAAGTCAACTACTTCTTGCTTCGTCGTCTGCTCGGTGTCA
AGACTGCCGATGGCAAGCAGGCCAAGGTTGCCAAGCTTACTAAGAACGAG
GTTCTCATGGTCAACATCGGTTCTACGGCTACCGGAGCTAAGGTCGTGGG
TGTCAAGGCTGATGCTGCCAAGCTCAGCTTGACCAGCCCTGCCTGTACCG
AGGTCGGAGAGAAGATTGCCATCAGTCGGAGAATTGAGAAGCACTGGCGT
CTGATCGGTTGGGCCAACATTGTCGCGTAAGTCTTATGCTCCACTCCTTA
GCTTGCGATTTCTTCCCAGCTCTTGAGAGAATGATGTTACTAATTACGGA
AACAGTGGTAACACCCTTGAGCCCATCCTGAACTAA
back to top

Coding sequence (CDS) from alignment at NKJJ01000019.1:568075..569760+

>CAN33_4645-T1 ID=CAN33_4645-T1|Name=CAN33_4645-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=4626bp|location=Sequence derived from alignment at NKJJ01000019.1:568075..569760+ (Aspergillus niger FDAARGOS_311)
ATGGCTGCCAACGGCGACTTCTCTGACGACGAGTCCCAGCCTGGATCCCC
CATGCTCGATGCGAACGGTCACGATGACATCGAAGAGCAAGAGCCCCTCG
ACCAGGAGGCCAAGCCTCTGAAGTCTGCGATGAAGAAGGAAGTTCCTCCT
CCCCAGCCCAAGCGGCCAGAGCTGCCCGAGCAGCCGAATCCGGAGACTCT
GGACCTGTCCACCCTGACTCCTTTGACCCCCGAAATTATTGCGCGCCAAG
CCACAATCAACATTGGCACCATCGGTCACGTCGCTCACGGCAAGTCGACG
GTCGTTAAGGCTATCTCCGAGGTCCAGACTGTCCGTTTCAAGAACGAGTT
GGAGCGAAACATTACGATCAAGCTGGGTTATGCCAACGCAAAGATCTACA
AGTGCGACAACCCCGAGTGCCCTAGGCCGACATGCTTTAAGAGCTTTAAG
AGTGAGAAGGAAGTCGACCCGCCTTGTGAGAGGGATGGCTGCGGTGGCCG
CTACAGACTGTTGAGACATGTGTCTTTCGTCGACTGCCCCGGTCACGATA
TTCTGATGAGTACTATGTTGTCTGGTGCCGCCGTCATGGACGCTGCCCTC
CTCCTTATTGCCGGAAACGAAACTTGCCCTCAACCTCAGACTTCGGAGCA
CTTGGCTGCCATCGAAATCATGAAGCTCAGCCACATCATCATTTTGCAAA
ACAAGGTGGACTTGATGAGAGAGGATGGTGCCCTGCAACATTACCAGTCG
ATCTTGAAGTTCATCCGTGGTACTGTCGCCGATGGCTCTCCGATCATTCC
CATTTCTGCACAGCTCAAGTACAACATCGATGCTGTCAACGAATACCTGG
TTTCGCACATTCCCGTCCCCGTCCGCGATTTCACCGCTTCCCCCCACATG
ATCGTCATTCGTTCCTTCGATGTGAACAAGCCTGGTGCCGAAATTGAGGA
GCTGAAGGGTGGTGTTGCCGGTGGTTCGATCTTGACTGGTGTTCTGAAGC
AGAACGACGAGATTGAGATTCGTCCCGGTCTGGTCACCAAGGACGAGAAC
GGCAAGATTCAGTGCCGTCCCATCTTCTCTCGGGTCATGTCCCTCTTTGC
CGAGCACAACGACCTCAAGTTTGCCGTCCCTGGTGGTTTGATTGGTGTCG
GTACTCGTGTAGACCCTACTCTGTGCCGTGCTGATCGTCTCGTTGGTTTC
GTCCTGGGTCACCGCGGACGCCTTCCCGCTATCTACACTGAGTTGGAAGT
CAACTACTTCTTGCTTCGTCGTCTGCTCGGTGTCAAGACTGCCGATGGCA
AGCAGGCCAAGGTTGCCAAGCTTACTAAGAACGAGGTTCTCATGGTCAAC
ATCGGTTCTACGGCTACCGGAGCTAAGGTCGTGGGTGTCAAGGCTGATGC
TGCCAAGCTCAGCTTGACCAGCCCTGCCTGTACCGAGGTCGGAGAGAAGA
TTGCCATCAGTCGGAGAATTGAGAAGCACTGGCGTCTGATCGGTTGGGCC
AACATTGTCGCTGGTAACACCCTTGAGCCCATCCTGAACTAAATGGCTGC
CAACGGCGACTTCTCTGACGACGAGTCCCAGCCTGGATCCCCCATGCTCG
ATGCGAACGGTCACGATGACATCGAAGAGCAAGAGCCCCTCGACCAGGAG
GCCAAGCCTCTGAAGTCTGCGATGAAGAAGGAAGTTCCTCCTCCCCAGCC
CAAGCGGCCAGAGCTGCCCGAGCAGCCGAATCCGGAGACTCTGGACCTGT
CCACCCTGACTCCTTTGACCCCCGAAATTATTGCGCGCCAAGCCACAATC
AACATTGGCACCATCGGTCACGTCGCTCACGGCAAGTCGACGGTCGTTAA
GGCTATCTCCGAGGTCCAGACTGTCCGTTTCAAGAACGAGTTGGAGCGAA
ACATTACGATCAAGCTGGGTTATGCCAACGCAAAGATCTACAAGTGCGAC
AACCCCGAGTGCCCTAGGCCGACATGCTTTAAGAGCTTTAAGAGTGAGAA
GGAAGTCGACCCGCCTTGTGAGAGGGATGGCTGCGGTGGCCGCTACAGAC
TGTTGAGACATGTGTCTTTCGTCGACTGCCCCGGTCACGATATTCTGATG
AGTACTATGTTGTCTGGTGCCGCCGTCATGGACGCTGCCCTCCTCCTTAT
TGCCGGAAACGAAACTTGCCCTCAACCTCAGACTTCGGAGCACTTGGCTG
CCATCGAAATCATGAAGCTCAGCCACATCATCATTTTGCAAAACAAGGTG
GACTTGATGAGAGAGGATGGTGCCCTGCAACATTACCAGTCGATCTTGAA
GTTCATCCGTGGTACTGTCGCCGATGGCTCTCCGATCATTCCCATTTCTG
CACAGCTCAAGTACAACATCGATGCTGTCAACGAATACCTGGTTTCGCAC
ATTCCCGTCCCCGTCCGCGATTTCACCGCTTCCCCCCACATGATCGTCAT
TCGTTCCTTCGATGTGAACAAGCCTGGTGCCGAAATTGAGGAGCTGAAGG
GTGGTGTTGCCGGTGGTTCGATCTTGACTGGTGTTCTGAAGCAGAACGAC
GAGATTGAGATTCGTCCCGGTCTGGTCACCAAGGACGAGAACGGCAAGAT
TCAGTGCCGTCCCATCTTCTCTCGGGTCATGTCCCTCTTTGCCGAGCACA
ACGACCTCAAGTTTGCCGTCCCTGGTGGTTTGATTGGTGTCGGTACTCGT
GTAGACCCTACTCTGTGCCGTGCTGATCGTCTCGTTGGTTTCGTCCTGGG
TCACCGCGGACGCCTTCCCGCTATCTACACTGAGTTGGAAGTCAACTACT
TCTTGCTTCGTCGTCTGCTCGGTGTCAAGACTGCCGATGGCAAGCAGGCC
AAGGTTGCCAAGCTTACTAAGAACGAGGTTCTCATGGTCAACATCGGTTC
TACGGCTACCGGAGCTAAGGTCGTGGGTGTCAAGGCTGATGCTGCCAAGC
TCAGCTTGACCAGCCCTGCCTGTACCGAGGTCGGAGAGAAGATTGCCATC
AGTCGGAGAATTGAGAAGCACTGGCGTCTGATCGGTTGGGCCAACATTGT
CGCTGGTAACACCCTTGAGCCCATCCTGAACTAAATGGCTGCCAACGGCG
ACTTCTCTGACGACGAGTCCCAGCCTGGATCCCCCATGCTCGATGCGAAC
GGTCACGATGACATCGAAGAGCAAGAGCCCCTCGACCAGGAGGCCAAGCC
TCTGAAGTCTGCGATGAAGAAGGAAGTTCCTCCTCCCCAGCCCAAGCGGC
CAGAGCTGCCCGAGCAGCCGAATCCGGAGACTCTGGACCTGTCCACCCTG
ACTCCTTTGACCCCCGAAATTATTGCGCGCCAAGCCACAATCAACATTGG
CACCATCGGTCACGTCGCTCACGGCAAGTCGACGGTCGTTAAGGCTATCT
CCGAGGTCCAGACTGTCCGTTTCAAGAACGAGTTGGAGCGAAACATTACG
ATCAAGCTGGGTTATGCCAACGCAAAGATCTACAAGTGCGACAACCCCGA
GTGCCCTAGGCCGACATGCTTTAAGAGCTTTAAGAGTGAGAAGGAAGTCG
ACCCGCCTTGTGAGAGGGATGGCTGCGGTGGCCGCTACAGACTGTTGAGA
CATGTGTCTTTCGTCGACTGCCCCGGTCACGATATTCTGATGAGTACTAT
GTTGTCTGGTGCCGCCGTCATGGACGCTGCCCTCCTCCTTATTGCCGGAA
ACGAAACTTGCCCTCAACCTCAGACTTCGGAGCACTTGGCTGCCATCGAA
ATCATGAAGCTCAGCCACATCATCATTTTGCAAAACAAGGTGGACTTGAT
GAGAGAGGATGGTGCCCTGCAACATTACCAGTCGATCTTGAAGTTCATCC
GTGGTACTGTCGCCGATGGCTCTCCGATCATTCCCATTTCTGCACAGCTC
AAGTACAACATCGATGCTGTCAACGAATACCTGGTTTCGCACATTCCCGT
CCCCGTCCGCGATTTCACCGCTTCCCCCCACATGATCGTCATTCGTTCCT
TCGATGTGAACAAGCCTGGTGCCGAAATTGAGGAGCTGAAGGGTGGTGTT
GCCGGTGGTTCGATCTTGACTGGTGTTCTGAAGCAGAACGACGAGATTGA
GATTCGTCCCGGTCTGGTCACCAAGGACGAGAACGGCAAGATTCAGTGCC
GTCCCATCTTCTCTCGGGTCATGTCCCTCTTTGCCGAGCACAACGACCTC
AAGTTTGCCGTCCCTGGTGGTTTGATTGGTGTCGGTACTCGTGTAGACCC
TACTCTGTGCCGTGCTGATCGTCTCGTTGGTTTCGTCCTGGGTCACCGCG
GACGCCTTCCCGCTATCTACACTGAGTTGGAAGTCAACTACTTCTTGCTT
CGTCGTCTGCTCGGTGTCAAGACTGCCGATGGCAAGCAGGCCAAGGTTGC
CAAGCTTACTAAGAACGAGGTTCTCATGGTCAACATCGGTTCTACGGCTA
CCGGAGCTAAGGTCGTGGGTGTCAAGGCTGATGCTGCCAAGCTCAGCTTG
ACCAGCCCTGCCTGTACCGAGGTCGGAGAGAAGATTGCCATCAGTCGGAG
AATTGAGAAGCACTGGCGTCTGATCGGTTGGGCCAACATTGTCGCTGGTA
ACACCCTTGAGCCCATCCTGAACTAA
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005525GTP binding
GO:0003924GTPase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
GCD11CAN33_4645Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_4645-T1.exon1CAN33_4645-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_4645-T1.exon2CAN33_4645-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_4645-T1.exon3CAN33_4645-T1.exon3Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_4645-T1.cdsCAN33_4645-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_4645-T1CAN33_4645-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteBUSCO:EOG09261TPN
DBxrefInterPro:IPR009001
DBxrefInterPro:IPR009000
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR004161
DBxrefInterPro:IPR015256
DBxrefInterPro:IPR000795
DBxrefPFAM:PF03144
DBxrefPFAM:PF00009
DBxrefPFAM:PF09173
Producteukaryotic translation initiation factor 2 subunit gamma
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000019.1supercontigNKJJ01000019.1:568075..569760 +
Powered by Drupal