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CAN33_4675-T1, CAN33_4675-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_4675-T1
Unique NameCAN33_4675-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000019.1:582173..583726+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_4675-T1 ID=CAN33_4675-T1|Name=CAN33_4675-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1554bp|location=Sequence derived from alignment at NKJJ01000019.1:582173..583726+ (Aspergillus niger FDAARGOS_311)
ATGAACGGCGTTCAGGATTCAACCTCTGCTGCGGCCTCGTCCCAGTCTGC
GCAGAGGCAGGTGCGCGTGCAGCTCGTTAGCAAGCAAGAAGACATTGCGC
TGCCTGAGAGCACCGGCCCCATTCTGGTTCCCACAGGTACGAATGCATTT
TGGCAACTTACTGCTAGTCTGCTTTGTATACACTTGTGTGCTCACTGATT
TTTGTAATATTCTGTAGGATTGCGGAGATATGCACTTTCTACCCTGGTGA
ATAATCTCTTGGGAAACGACAAGCCGGTGCCATTTGAGTTTTTGATTAAT
GGCGCATTCCTTCGGACTTCGATCGATGAATACTTGACGGCCAATGGCAT
ATCTGCGGAAACCACTCTGGAAATTGAGTACATAAGAGCGTTGATTCCCC
CGCTCCATATTGCCTCCTTCGAGCATGATGACTGGGTTGGCTCTGTGGAT
GTCCTCTCTGCGACCTCGCTTGCTACCTCTTGGGCTTCTGCGGTCGTCTC
TCCAGGCCAGGAGAGAATCCTATCGGGAAGCTATGACGGATTGCTTCGTG
TGTGGAATATGTCCTCCCAGATCGTCGCAACCTCACCGTCCCCGGCTGAT
GGAGGGCACGGTGCGTCCATCAAAGCCGCTAAGTTCATCTCGCCGAATTC
GATTGTGTCGGCTGGCCTTGATCGCACCGTTCGACTCTGGAAGTACAATG
AAAGCGATGATGGATTCTCAGGAAAGATCACTCCGCAGATTGAGCTCTAC
GGACACAAATCTGGTATCAACTCGTTGGCTGTGCATGCCCCCTCGAACCG
TATTCTCTCCGCCTCGTCAGACCACAGCATTGGCTTCTGGTCGACAAAGA
AGTCAGATGCCCCAGCTGCCCCCGAGAACCTAGTTCCATCTGCTGCGTCA
CGGAGCTCCAAGCGCAGAAAGGTGAGCTCGTCCGTCAGCATCCCGCAGCG
TGGCCCGCTTGCGCTGTTGTCTTCCCACACTGCGCCAGTGTCAGCTGCCA
TTTTTGACACAAACGACTCGACTGTCGGTTATTCTACTTCGTGGGATCAC
TCTCTGCGTACATGGGATCTGGTCACGGCCGCTTTAGTAGACACCAGATC
GACATCCCATTCGTTGCTATCTCTCGAGCATCTCCCCGAGCACCACCTTC
TTGCGACAGGAACTTCCGCTCGCCACATCACTCTCATCGATCCTCGTACA
TCAGCGACAACCATCTCCGCCATGACCCTCAGAGGTCACACCAATGCCGT
GGTTTCGCTGTCCCGCGATCCCCACAGCAGCTACGGTCTCATCAGTGGTA
GTCACGACGGTACATGTCGAATCTGGGATATCCGTGCTACGAAGACGGAC
AAGGACGGTGTTGTTGGTGAGAGCGTGTATTCGATTACTCGGAGAAGCTT
GGAAGAGCAAGGTAAAGCGGATGCTAAGCGAGTAGGTGGAGAGGGAGTCA
AGGTCTTCAGTGTGTGCTGGGACCGCTCGGTTGGCATTGTCAGCGCCGGT
GAGGATAAGAGGATTCAGATCAACCGGGGTGAAGGCGTCTTGTCTTCCGC
ATAA
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Coding sequence (CDS) from alignment at NKJJ01000019.1:582173..583726+

>CAN33_4675-T1 ID=CAN33_4675-T1|Name=CAN33_4675-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2946bp|location=Sequence derived from alignment at NKJJ01000019.1:582173..583726+ (Aspergillus niger FDAARGOS_311)
ATGAACGGCGTTCAGGATTCAACCTCTGCTGCGGCCTCGTCCCAGTCTGC
GCAGAGGCAGGTGCGCGTGCAGCTCGTTAGCAAGCAAGAAGACATTGCGC
TGCCTGAGAGCACCGGCCCCATTCTGGTTCCCACAGGATTGCGGAGATAT
GCACTTTCTACCCTGGTGAATAATCTCTTGGGAAACGACAAGCCGGTGCC
ATTTGAGTTTTTGATTAATGGCGCATTCCTTCGGACTTCGATCGATGAAT
ACTTGACGGCCAATGGCATATCTGCGGAAACCACTCTGGAAATTGAGTAC
ATAAGAGCGTTGATTCCCCCGCTCCATATTGCCTCCTTCGAGCATGATGA
CTGGGTTGGCTCTGTGGATGTCCTCTCTGCGACCTCGCTTGCTACCTCTT
GGGCTTCTGCGGTCGTCTCTCCAGGCCAGGAGAGAATCCTATCGGGAAGC
TATGACGGATTGCTTCGTGTGTGGAATATGTCCTCCCAGATCGTCGCAAC
CTCACCGTCCCCGGCTGATGGAGGGCACGGTGCGTCCATCAAAGCCGCTA
AGTTCATCTCGCCGAATTCGATTGTGTCGGCTGGCCTTGATCGCACCGTT
CGACTCTGGAAGTACAATGAAAGCGATGATGGATTCTCAGGAAAGATCAC
TCCGCAGATTGAGCTCTACGGACACAAATCTGGTATCAACTCGTTGGCTG
TGCATGCCCCCTCGAACCGTATTCTCTCCGCCTCGTCAGACCACAGCATT
GGCTTCTGGTCGACAAAGAAGTCAGATGCCCCAGCTGCCCCCGAGAACCT
AGTTCCATCTGCTGCGTCACGGAGCTCCAAGCGCAGAAAGGTGAGCTCGT
CCGTCAGCATCCCGCAGCGTGGCCCGCTTGCGCTGTTGTCTTCCCACACT
GCGCCAGTGTCAGCTGCCATTTTTGACACAAACGACTCGACTGTCGGTTA
TTCTACTTCGTGGGATCACTCTCTGCGTACATGGGATCTGGTCACGGCCG
CTTTAGTAGACACCAGATCGACATCCCATTCGTTGCTATCTCTCGAGCAT
CTCCCCGAGCACCACCTTCTTGCGACAGGAACTTCCGCTCGCCACATCAC
TCTCATCGATCCTCGTACATCAGCGACAACCATCTCCGCCATGACCCTCA
GAGGTCACACCAATGCCGTGGTTTCGCTGTCCCGCGATCCCCACAGCAGC
TACGGTCTCATCAGTGGTAGTCACGACGGTACATGTCGAATCTGGGATAT
CCGTGCTACGAAGACGGACAAGGACGGTGTTGTTGGTGAGAGCGTGTATT
CGATTACTCGGAGAAGCTTGGAAGAGCAAGGTAAAGCGGATGCTAAGCGA
GTAGGTGGAGAGGGAGTCAAGGTCTTCAGTGTGTGCTGGGACCGCTCGGT
TGGCATTGTCAGCGCCGGTGAGGATAAGAGGATTCAGATCAACCGGGGTG
AAGGCGTCTTGTCTTCCGCATAAATGAACGGCGTTCAGGATTCAACCTCT
GCTGCGGCCTCGTCCCAGTCTGCGCAGAGGCAGGTGCGCGTGCAGCTCGT
TAGCAAGCAAGAAGACATTGCGCTGCCTGAGAGCACCGGCCCCATTCTGG
TTCCCACAGGATTGCGGAGATATGCACTTTCTACCCTGGTGAATAATCTC
TTGGGAAACGACAAGCCGGTGCCATTTGAGTTTTTGATTAATGGCGCATT
CCTTCGGACTTCGATCGATGAATACTTGACGGCCAATGGCATATCTGCGG
AAACCACTCTGGAAATTGAGTACATAAGAGCGTTGATTCCCCCGCTCCAT
ATTGCCTCCTTCGAGCATGATGACTGGGTTGGCTCTGTGGATGTCCTCTC
TGCGACCTCGCTTGCTACCTCTTGGGCTTCTGCGGTCGTCTCTCCAGGCC
AGGAGAGAATCCTATCGGGAAGCTATGACGGATTGCTTCGTGTGTGGAAT
ATGTCCTCCCAGATCGTCGCAACCTCACCGTCCCCGGCTGATGGAGGGCA
CGGTGCGTCCATCAAAGCCGCTAAGTTCATCTCGCCGAATTCGATTGTGT
CGGCTGGCCTTGATCGCACCGTTCGACTCTGGAAGTACAATGAAAGCGAT
GATGGATTCTCAGGAAAGATCACTCCGCAGATTGAGCTCTACGGACACAA
ATCTGGTATCAACTCGTTGGCTGTGCATGCCCCCTCGAACCGTATTCTCT
CCGCCTCGTCAGACCACAGCATTGGCTTCTGGTCGACAAAGAAGTCAGAT
GCCCCAGCTGCCCCCGAGAACCTAGTTCCATCTGCTGCGTCACGGAGCTC
CAAGCGCAGAAAGGTGAGCTCGTCCGTCAGCATCCCGCAGCGTGGCCCGC
TTGCGCTGTTGTCTTCCCACACTGCGCCAGTGTCAGCTGCCATTTTTGAC
ACAAACGACTCGACTGTCGGTTATTCTACTTCGTGGGATCACTCTCTGCG
TACATGGGATCTGGTCACGGCCGCTTTAGTAGACACCAGATCGACATCCC
ATTCGTTGCTATCTCTCGAGCATCTCCCCGAGCACCACCTTCTTGCGACA
GGAACTTCCGCTCGCCACATCACTCTCATCGATCCTCGTACATCAGCGAC
AACCATCTCCGCCATGACCCTCAGAGGTCACACCAATGCCGTGGTTTCGC
TGTCCCGCGATCCCCACAGCAGCTACGGTCTCATCAGTGGTAGTCACGAC
GGTACATGTCGAATCTGGGATATCCGTGCTACGAAGACGGACAAGGACGG
TGTTGTTGGTGAGAGCGTGTATTCGATTACTCGGAGAAGCTTGGAAGAGC
AAGGTAAAGCGGATGCTAAGCGAGTAGGTGGAGAGGGAGTCAAGGTCTTC
AGTGTGTGCTGGGACCGCTCGGTTGGCATTGTCAGCGCCGGTGAGGATAA
GAGGATTCAGATCAACCGGGGTGAAGGCGTCTTGTCTTCCGCATAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0042254ribosome biogenesis
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
YTM1CAN33_4675Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_4675-T1.exon1CAN33_4675-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_4675-T1.exon2CAN33_4675-T1.exon2Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_4675-T1.cdsCAN33_4675-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_4675-T1CAN33_4675-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR036322
DBxrefInterPro:IPR028599
DBxrefInterPro:IPR017986
DBxrefInterPro:IPR019775
DBxrefInterPro:IPR012972
DBxrefInterPro:IPR015943
DBxrefInterPro:IPR001680
DBxrefInterPro:IPR020472
DBxrefPFAM:PF00400
DBxrefPFAM:PF08154
Productribosome bioproteinsis protein ytm1
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000019.1supercontigNKJJ01000019.1:582173..583726 +
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