You are here

Home

CAN33_46875-T1, CAN33_46875-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_46875-T1
Unique NameCAN33_46875-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000022.1:2931583..2933391+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_46875-T1 ID=CAN33_46875-T1|Name=CAN33_46875-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1809bp|location=Sequence derived from alignment at NKJJ01000022.1:2931583..2933391+ (Aspergillus niger FDAARGOS_311)
ATGGATCTTTTGTCGGTCCTTCCGGACTTCCCTACCAAGCCATATGCTCA
TATTCTCCCACCTCTTGAGCGGAGCCATATCAGCACGGTCGACTTGATCA
CTCTCGACACTCTCGAAGTCGCAAAGCGTGCTCGTGTTCCTCCCGCCGAT
GTCCGCCGATTGTCCGCTCAGATCATAAGAGCACTCCACAATGATGTCGG
TTTCAAGGAGAACAGAGATCCCGATGCTGATGAGCCGAGCTCCAGCCTCA
GTGTTGATGTTCCTGTCTTCCCAGGCCCGACGACCAAGCTAGATCTATTC
CAGTGGAGTGCGATTAGTACACTCGACCCCACGTTAGACGCACTGCTTGA
TGGCGGCATACCGACGGGTTATGTGACCGAGGTGACTGGTGAGAGGTGCG
TATACTCGCTCCCCAGAGTGAGTCCGTCCGTATTCGAGGCGTCCTGACCT
AATGGGCTAATCGGTCACAGTGGGAGTGGCAAGACGCAATTCCTTCTCAC
CCTTCTCCTGGCCGCCCAACTTCCTGCACCCCGTGGTCTGGACAAGTGTG
CCATATACATTTCCACAGAAGCTCCGTTATCGACGCCACGGCTTTCGCAG
CTCATTGAATTCCATCCTTATCTATCTTCCTTGTCGCAAGCTCACACGCC
CTCGCTGGAGAAGATATTGTCTATCAATGCCATGGATCTCGAGGCACAAG
ATCACATCCTCAACTACCAACTCCCTGTTGCAATCAAGCGATATAATGTC
GGATTGGTCGTCATTGACTCCATAACTGCAAATTACCGGGCAGAACATTC
GTCCCATAATCTGTCGGGCTTGTCCACACGGTCTGGCGAGCTTTCCAGAT
TAGGCCACATGCTGAGGAACCTGGCTGTGGAGGAAAATGTCGCAGTTGTA
GTAGCGAACCAAGTTTCTGATCGCATTGAAGCTGCTGGCAGGCACCCAAC
ACTAATACGTTCGAATGGCGGTGTCATCTCATCTATTCCTTCAACGCAAC
AGCAAGTGCCGTCGTCACGTCACGAGTTAGAAGCTGTTACACCGTTGCCA
CGAAATCGACCTCTTGAGTCCCGGAATGTCGAACTGACTCCTCATAACCC
GATCCTTCAATCCTCTCCGTCTAGTCTTCCCTCGTCACCGTACACCACAG
AGGATGACCCGCAGCAGCAGCAGTTCGACGGGTCATACCTGATTGGCAAC
CCTGTACGAAACGAGATCTTGAGTCTTCTACACCAGCAGCGGTTCTTCAC
CGGGTGGGGTGACACGCTACAACCTACTATCTCAAGCCTGTACCCAGCTT
TCCAACAAGCTGCACAGAAGACCCCTGCTCTAGGCTTGGTTTGGTCTACC
CAGATTGCATGTCGCATTGCACTGAAAAAGGAGACCCGCTTTGTGGATTG
GGAGGCCATTCTAGAGGACACGTTTGTCTCCAGCGAGCAGCATTTGCTGC
CTACAGCAAGAGAGCAGGCCAATGAGCCCCCGGATTCACGAGTAGCAATG
GAGAATGAAGAACAATCTAGGGCACACCACCCTGCAGTCTGTGCACCACC
GGACGAGACCGATGCAGTAGACGATAAGACGAATCTCGATGTCCCGAATA
CTGTCCGTGATGATCATGCAGCAACCGGGCAATCCTCACCATTGTCATCA
CAGGCAGTTACACAAGGCGTTCGAAGAACCATGAAACTTGTATTTGCCCC
CTGGACTGCCGGCCCAGTCACAGAGCAAGGCGAGATCCAACACGAGGCGG
AGTTTGAAATCTGGAAGGGTGGGCTGAGGGGCTGTACAGAGGATTTTGAC
ACCATCTAG
back to top

Coding sequence (CDS) from alignment at NKJJ01000022.1:2931583..2933391+

>CAN33_46875-T1 ID=CAN33_46875-T1|Name=CAN33_46875-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=3468bp|location=Sequence derived from alignment at NKJJ01000022.1:2931583..2933391+ (Aspergillus niger FDAARGOS_311)
ATGGATCTTTTGTCGGTCCTTCCGGACTTCCCTACCAAGCCATATGCTCA
TATTCTCCCACCTCTTGAGCGGAGCCATATCAGCACGGTCGACTTGATCA
CTCTCGACACTCTCGAAGTCGCAAAGCGTGCTCGTGTTCCTCCCGCCGAT
GTCCGCCGATTGTCCGCTCAGATCATAAGAGCACTCCACAATGATGTCGG
TTTCAAGGAGAACAGAGATCCCGATGCTGATGAGCCGAGCTCCAGCCTCA
GTGTTGATGTTCCTGTCTTCCCAGGCCCGACGACCAAGCTAGATCTATTC
CAGTGGAGTGCGATTAGTACACTCGACCCCACGTTAGACGCACTGCTTGA
TGGCGGCATACCGACGGGTTATGTGACCGAGGTGACTGGTGAGAGTGGGA
GTGGCAAGACGCAATTCCTTCTCACCCTTCTCCTGGCCGCCCAACTTCCT
GCACCCCGTGGTCTGGACAAGTGTGCCATATACATTTCCACAGAAGCTCC
GTTATCGACGCCACGGCTTTCGCAGCTCATTGAATTCCATCCTTATCTAT
CTTCCTTGTCGCAAGCTCACACGCCCTCGCTGGAGAAGATATTGTCTATC
AATGCCATGGATCTCGAGGCACAAGATCACATCCTCAACTACCAACTCCC
TGTTGCAATCAAGCGATATAATGTCGGATTGGTCGTCATTGACTCCATAA
CTGCAAATTACCGGGCAGAACATTCGTCCCATAATCTGTCGGGCTTGTCC
ACACGGTCTGGCGAGCTTTCCAGATTAGGCCACATGCTGAGGAACCTGGC
TGTGGAGGAAAATGTCGCAGTTGTAGTAGCGAACCAAGTTTCTGATCGCA
TTGAAGCTGCTGGCAGGCACCCAACACTAATACGTTCGAATGGCGGTGTC
ATCTCATCTATTCCTTCAACGCAACAGCAAGTGCCGTCGTCACGTCACGA
GTTAGAAGCTGTTACACCGTTGCCACGAAATCGACCTCTTGAGTCCCGGA
ATGTCGAACTGACTCCTCATAACCCGATCCTTCAATCCTCTCCGTCTAGT
CTTCCCTCGTCACCGTACACCACAGAGGATGACCCGCAGCAGCAGCAGTT
CGACGGGTCATACCTGATTGGCAACCCTGTACGAAACGAGATCTTGAGTC
TTCTACACCAGCAGCGGTTCTTCACCGGGTGGGGTGACACGCTACAACCT
ACTATCTCAAGCCTGTACCCAGCTTTCCAACAAGCTGCACAGAAGACCCC
TGCTCTAGGCTTGGTTTGGTCTACCCAGATTGCATGTCGCATTGCACTGA
AAAAGGAGACCCGCTTTGTGGATTGGGAGGCCATTCTAGAGGACACGTTT
GTCTCCAGCGAGCAGCATTTGCTGCCTACAGCAAGAGAGCAGGCCAATGA
GCCCCCGGATTCACGAGTAGCAATGGAGAATGAAGAACAATCTAGGGCAC
ACCACCCTGCAGTCTGTGCACCACCGGACGAGACCGATGCAGTAGACGAT
AAGACGAATCTCGATGTCCCGAATACTGTCCGTGATGATCATGCAGCAAC
CGGGCAATCCTCACCATTGTCATCACAGGCAGTTACACAAGGCGTTCGAA
GAACCATGAAACTTGTATTTGCCCCCTGGACTGCCGGCCCAGTCACAGAG
CAAGGCGAGATCCAACACGAGGCGGAGTTTGAAATCTGGAAGGGTGGGCT
GAGGGGCTGTACAGAGGATTTTGACACCATCTAGATGGATCTTTTGTCGG
TCCTTCCGGACTTCCCTACCAAGCCATATGCTCATATTCTCCCACCTCTT
GAGCGGAGCCATATCAGCACGGTCGACTTGATCACTCTCGACACTCTCGA
AGTCGCAAAGCGTGCTCGTGTTCCTCCCGCCGATGTCCGCCGATTGTCCG
CTCAGATCATAAGAGCACTCCACAATGATGTCGGTTTCAAGGAGAACAGA
GATCCCGATGCTGATGAGCCGAGCTCCAGCCTCAGTGTTGATGTTCCTGT
CTTCCCAGGCCCGACGACCAAGCTAGATCTATTCCAGTGGAGTGCGATTA
GTACACTCGACCCCACGTTAGACGCACTGCTTGATGGCGGCATACCGACG
GGTTATGTGACCGAGGTGACTGGTGAGAGTGGGAGTGGCAAGACGCAATT
CCTTCTCACCCTTCTCCTGGCCGCCCAACTTCCTGCACCCCGTGGTCTGG
ACAAGTGTGCCATATACATTTCCACAGAAGCTCCGTTATCGACGCCACGG
CTTTCGCAGCTCATTGAATTCCATCCTTATCTATCTTCCTTGTCGCAAGC
TCACACGCCCTCGCTGGAGAAGATATTGTCTATCAATGCCATGGATCTCG
AGGCACAAGATCACATCCTCAACTACCAACTCCCTGTTGCAATCAAGCGA
TATAATGTCGGATTGGTCGTCATTGACTCCATAACTGCAAATTACCGGGC
AGAACATTCGTCCCATAATCTGTCGGGCTTGTCCACACGGTCTGGCGAGC
TTTCCAGATTAGGCCACATGCTGAGGAACCTGGCTGTGGAGGAAAATGTC
GCAGTTGTAGTAGCGAACCAAGTTTCTGATCGCATTGAAGCTGCTGGCAG
GCACCCAACACTAATACGTTCGAATGGCGGTGTCATCTCATCTATTCCTT
CAACGCAACAGCAAGTGCCGTCGTCACGTCACGAGTTAGAAGCTGTTACA
CCGTTGCCACGAAATCGACCTCTTGAGTCCCGGAATGTCGAACTGACTCC
TCATAACCCGATCCTTCAATCCTCTCCGTCTAGTCTTCCCTCGTCACCGT
ACACCACAGAGGATGACCCGCAGCAGCAGCAGTTCGACGGGTCATACCTG
ATTGGCAACCCTGTACGAAACGAGATCTTGAGTCTTCTACACCAGCAGCG
GTTCTTCACCGGGTGGGGTGACACGCTACAACCTACTATCTCAAGCCTGT
ACCCAGCTTTCCAACAAGCTGCACAGAAGACCCCTGCTCTAGGCTTGGTT
TGGTCTACCCAGATTGCATGTCGCATTGCACTGAAAAAGGAGACCCGCTT
TGTGGATTGGGAGGCCATTCTAGAGGACACGTTTGTCTCCAGCGAGCAGC
ATTTGCTGCCTACAGCAAGAGAGCAGGCCAATGAGCCCCCGGATTCACGA
GTAGCAATGGAGAATGAAGAACAATCTAGGGCACACCACCCTGCAGTCTG
TGCACCACCGGACGAGACCGATGCAGTAGACGATAAGACGAATCTCGATG
TCCCGAATACTGTCCGTGATGATCATGCAGCAACCGGGCAATCCTCACCA
TTGTCATCACAGGCAGTTACACAAGGCGTTCGAAGAACCATGAAACTTGT
ATTTGCCCCCTGGACTGCCGGCCCAGTCACAGAGCAAGGCGAGATCCAAC
ACGAGGCGGAGTTTGAAATCTGGAAGGGTGGGCTGAGGGGCTGTACAGAG
GATTTTGACACCATCTAG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0005524ATP binding
GO:0003677DNA binding
GO:0008094DNA-dependent ATPase activity
Vocabulary: Biological Process
TermDefinition
GO:0006281DNA repair
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_46875CAN33_46875Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_46875-T1.exon1CAN33_46875-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_46875-T1.exon2CAN33_46875-T1.exon2Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_46875-T1.cdsCAN33_46875-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_46875-T1CAN33_46875-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR020588
DBxrefInterPro:IPR013632
DBxrefInterPro:IPR003593
DBxrefPFAM:PF08423
DBxrefPFAM:PF06745
DBxrefPFAM:PF13481
ProductRad51 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000022.1supercontigNKJJ01000022.1:2931583..2933391 +
Powered by Drupal