You are here

Home

CAN33_46900-T1, CAN33_46900-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_46900-T1
Unique NameCAN33_46900-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000022.1:2953847..2955054+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_46900-T1 ID=CAN33_46900-T1|Name=CAN33_46900-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1208bp|location=Sequence derived from alignment at NKJJ01000022.1:2953847..2955054+ (Aspergillus niger FDAARGOS_311)
ATGTCTGTCGCTAAGATTGCTGGTGTCGTCCTCGGCTCGGCCGCCCTTGT
TGCTGGCCACGGTTATGTGTCTGGTGCTGTCATCGACGGCGAGTACTACG
GAGGATACATCGTCTCCTCCTACGCCTATGAGAGTGACCCTCCGGAGACC
ATTGCCTGGTCTACCACAGCCACTGACCTTGGCTTCGTCGACGGCTCTGA
ATACTCGGACCCTGACATCATCTGCCACAAGAGCGCTAAGCCTGGTGCTA
TCTCCGCTGACGTCAAGGCCGGTGGTACTGTTGAGCTTCAGTGGACTGAC
TGGCCTTCCAGCCACCACGGTCCCGTCCTGACTTACCTTGCCAACTGCAA
CGGTGACTGCTCCGATGTCACCAAGACTGATCTTGAGTTCTTCAAGATCG
ACGAGAGCGGCCTCATCAGCGACACTGAAGTCCCCGGAACCTGGGCCACT
GACAACTTGATCTCCAACAACAACAGCTGGACTGTGACCATTCCCTCGAC
CCTCGAGGCTGGTAACTACGTCCTGCGCCACGAGATCATTGCCCTGCACT
CCGCTGAGAACAAGGATGGCGCCCAGAACTACCCTCAATGTCTCAACCTG
AAGGTTACCGGCAGTGGTAGCTCCACCTACTCCGGCACCAAGGGTGAAGC
CCTCTACAAGGACACCGACCCGGGTATCCTGGTCAACATCTACGAGACCC
TGAGCTCCTACGACATCCCCGGTCCTGCTATGTACAACGCCACTTCCTCC
AGCAGCTCTTCCGGCAGCTCCTCCGGTGCCTCTTCTACCAGCTCCGCTGC
CGCTGCCGCCGCCACTACTTCCAGTGCCTCGACTTCCAGCGCTTCCACCC
CACCACCAGCGCTGCCGCTGCGACTAGCTCCGCCGTAAGCGCCACCACCA
CTGCTGCTGCTGCCGTTGTCACCGACGTTGAAACCACCGTTCAGACTGCG
GTCGCCACTGCTTACCAGACTTCGACTGACGTTGTGCAGGTCACTGTCAC
TGGCAGCGCCCCCCAGCAGACCCACATCCAGGTCGCCAGCTCCAGCGCCG
CTGCTTCCACCCCCAGCAGCTCCAGTGTCGCCGTCTCCAGCGACAACCTC
ACCAGCTACTTCAGCTCTCTGAGCGCCGACCAGTTCCTCAGCGTCCTGAA
GGAGACCTTCTCTTGGCTGGTCACTGAGAAGAAGCACGCCCGTGACCTCA
ACGCCTAA
back to top

Coding sequence (CDS) from alignment at NKJJ01000022.1:2953847..2955054+

>CAN33_46900-T1 ID=CAN33_46900-T1|Name=CAN33_46900-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1866bp|location=Sequence derived from alignment at NKJJ01000022.1:2953847..2955054+ (Aspergillus niger FDAARGOS_311)
ATGTCTGTCGCTAAGATTGCTGGTGTCGTCCTCGGCTCGGCCGCCCTTGT
TGCTGGCCACGGTTATGTGTCTGGTGCTGTCATCGACGGCGAGTACTACG
GAGGATACATCGTCTCCTCCTACGCCTATGAGAGTGACCCTCCGGAGACC
ATTGCCTGGTCTACCACAGCCACTGACCTTGGCTTCGTCGACGGCTCTGA
ATACTCGGACCCTGACATCATCTGCCACAAGAGCGCTAAGCCTGGTGCTA
TCTCCGCTGACGTCAAGGCCGGTGGTACTGTTGAGCTTCAGTGGACTGAC
TGGCCTTCCAGCCACCACGGTCCCGTCCTGACTTACCTTGCCAACTGCAA
CGGTGACTGCTCCGATGTCACCAAGACTGATCTTGAGTTCTTCAAGATCG
ACGAGAGCGGCCTCATCAGCGACACTGAAGTCCCCGGAACCTGGGCCACT
GACAACTTGATCTCCAACAACAACAGCTGGACTGTGACCATTCCCTCGAC
CCTCGAGGCTGGTAACTACGTCCTGCGCCACGAGATCATTGCCCTGCACT
CCGCTGAGAACAAGGATGGCGCCCAGAACTACCCTCAATGTCTCAACCTG
AAGGTTACCGGCAGTGGTAGCTCCACCTACTCCGGCACCAAGGGTGAAGC
CCTCTACAAGGACACCGACCCGGGTATCCTGGTCAACATCTACGAGACCC
TGAGCTCCTACGACATCCCCGGTCCTGCTATCGCCCCCCAGCAGACCCAC
ATCCAGGTCGCCAGCTCCAGCGCCGCTGCTTCCACCCCCAGCAGCTCCAG
TGTCGCCGTCTCCAGCGACAACCTCACCAGCTACTTCAGCTCTCTGAGCG
CCGACCAGTTCCTCAGCGTCCTGAAGGAGACCTTCTCTTGGCTGGTCACT
GAGAAGAAGCACGCCCGTGACCTCAACGCCTAAATGTCTGTCGCTAAGAT
TGCTGGTGTCGTCCTCGGCTCGGCCGCCCTTGTTGCTGGCCACGGTTATG
TGTCTGGTGCTGTCATCGACGGCGAGTACTACGGAGGATACATCGTCTCC
TCCTACGCCTATGAGAGTGACCCTCCGGAGACCATTGCCTGGTCTACCAC
AGCCACTGACCTTGGCTTCGTCGACGGCTCTGAATACTCGGACCCTGACA
TCATCTGCCACAAGAGCGCTAAGCCTGGTGCTATCTCCGCTGACGTCAAG
GCCGGTGGTACTGTTGAGCTTCAGTGGACTGACTGGCCTTCCAGCCACCA
CGGTCCCGTCCTGACTTACCTTGCCAACTGCAACGGTGACTGCTCCGATG
TCACCAAGACTGATCTTGAGTTCTTCAAGATCGACGAGAGCGGCCTCATC
AGCGACACTGAAGTCCCCGGAACCTGGGCCACTGACAACTTGATCTCCAA
CAACAACAGCTGGACTGTGACCATTCCCTCGACCCTCGAGGCTGGTAACT
ACGTCCTGCGCCACGAGATCATTGCCCTGCACTCCGCTGAGAACAAGGAT
GGCGCCCAGAACTACCCTCAATGTCTCAACCTGAAGGTTACCGGCAGTGG
TAGCTCCACCTACTCCGGCACCAAGGGTGAAGCCCTCTACAAGGACACCG
ACCCGGGTATCCTGGTCAACATCTACGAGACCCTGAGCTCCTACGACATC
CCCGGTCCTGCTATCGCCCCCCAGCAGACCCACATCCAGGTCGCCAGCTC
CAGCGCCGCTGCTTCCACCCCCAGCAGCTCCAGTGTCGCCGTCTCCAGCG
ACAACCTCACCAGCTACTTCAGCTCTCTGAGCGCCGACCAGTTCCTCAGC
GTCCTGAAGGAGACCTTCTCTTGGCTGGTCACTGAGAAGAAGCACGCCCG
TGACCTCAACGCCTAA
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_46900CAN33_46900Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_46900-T1.exon1CAN33_46900-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_46900-T1.exon2CAN33_46900-T1.exon2Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_46900-T1.cdsCAN33_46900-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_46900-T1CAN33_46900-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteEggNog:ENOG41
NoteSECRETED:SignalP(1-25)
NoteCAZy:AA9
DBxrefInterPro:IPR005103
DBxrefPFAM:PF03443
ProductGlycosyl hydrolase family 61 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000022.1supercontigNKJJ01000022.1:2953847..2955054 +
Powered by Drupal