You are here

Home

CAN33_47645-T1, CAN33_47645-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_47645-T1
Unique NameCAN33_47645-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000022.1:3434845..3437161-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_47645-T1 ID=CAN33_47645-T1|Name=CAN33_47645-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=2317bp|location=Sequence derived from alignment at NKJJ01000022.1:3434845..3437161- (Aspergillus niger FDAARGOS_311)
ATGCCCAGATTAGATGGTAAGTATAATTCCTCCTCTCTGCTGATTGCCCG
TTGCTGATGCATCCAGACTCGGAAACGATCCGCATTCTTGTCTCTACAGA
CAACCATGTCGGATACAATGAACGGGATCCCATCCGTGGTGATGACAGCT
GGAAAAGCTTTCATGAGGTAATGTGTCTGGCCAAGGAACAAGATGTGGAC
ATGGTGCTTCTGGCAGGCGATCTCTTCCACGAGAACAAGCCATCGCGCAA
GTCCATGTACCAAGTTATGCGCTCCATTCGTATGAACTGTCTCGGCGATA
AGCCTTGCGAACTGGAGATGCTGAGTGATGCGAGCGAAAATTTTCAGGGT
GCTTTCAATCACGTGAACTACGAGGATTTGGATATCAATGTGGCTATCCC
CATCTTTTCAATTCACGGCAATCACGATGATCCGTCCGGAGAAGGACATC
TGGCTGCATTGGACCTACTTCAGGTGTCGGGGTTGATCAATTACTATGGA
CGGACCCCCGAGTCGGACAATATCCAGATTAAACCGGTTTTGCTCCAGAA
AGGACGCACGAAACTTGCTCTCTACGGTATGAGCAACGTCCGCGATGAGC
GTCTATTTCGCACATTTCGAGACGGCAAGGTCAAGTTCTACCAACCCTCA
ATCCAGAAAGAAGACTGGTTCAACTTGATGTCTGTTCATCAGAACCATTA
TGCACACACTGAGACAGGCTATTTGCCCGAGAATTTCCTACCCGAATTCC
TGGACCTCGTCGTCTGGGGCCACGAACACGAGTGTTTAATCAACCCACGA
TTGAACCCCGAGACCAAGTTTCACGTCATGCAGCCCGGCTCATCCGTGGC
GACATCCCTGGTTCCTGGCGAATCAGTGGCCAAACATGTAGCCATCCTCA
GTATCACAGGCCGGGAGTTCAAATGCGAGCCCATCCGTCTCAAGTCCGTC
CGCCCATTCGCCATGCGCGAAATCATTCTCTCCGAAGAAAAAGGCGCGCA
AAAGCTTGCCCGCAAGGACAACAACCGCACGGAAGTGACTCGCCTTCTCA
TGGAGATTGTCGAGGAACTGATCGAAGAAGCGAAAACGGAATGGCTAGAA
ATGCAAGATGAGACAGCAGAAGACGAAGAGCTAGAAGTCCCACTACCACT
AGTGCGACTGCGCGTTGAAACCTCAACGCCAGAAGGAGGCAGTTATGACT
GTGAGAACCCGCAGCGATTCTCCAACCGCTTCGTAGGCAAGGTCGCCAAT
GTGAACGATGTCGTCCAGTTCTACCGCAAGAAGAAAAACACCAACAGTAC
GCGCAAACCGGGTGAAACCGACCTCGACGAGACGGCAGTCTCACACCTCT
CCACCCTCGACACCGTCAAAGTCGAACAATTAGTGCGCGACTTCCTCTCC
GCACAGTCTCTGACCATCCTCCCACAGAACTCCTTCGGCGACGCAGTCGC
CCAATTCATCGACAAAGACGACAAACATGCCTTGGAAATGTTCGTCAACG
AATCACTCGAGAGCCAAATGAAGCACTTACTGGCCCTAGATCGCGACCAC
GATCTAGAGGAAGAAGAAGAAATTGCAGAAAGCTCCCTACAAAAAGCCAT
GGAGAGATATCGCACTCAAATGGAAGACATGTTCTCCCGCGGTATCAAGA
AACGCACCCGCGGCAAGAAGCGCTTCAAGCCCAAGCCCGACGGCTGGGAC
ACCGAATTCGACGGTGTCTGGGAGGACCAACCCGGCGCTCTCATCCACTC
CGACAACGAGGACGGCGATCCCAATGAAGACGTAGCCGGCGAGGATGGCG
CCGAACCACCCACCACATCACGAGCAACATCATCCACACGCGGCCGCGGC
CGAGGCCGTGGCGGTAGAGCCACCACCACTGCCGCTACAACCCGCAAAAC
CGCCACCACAAAAGCAGCACCTGCTACTACTACTTCAAAGAAAACCACAA
CCTCTACTAAAAGCCGTAAACGCCGCACCGTCTCCGACGAAGAAGATGAA
CAAGAGGATGTCATAATGCTCGACGATGACGATGATGACGACGACGACAA
CGCAGCCACCTCCCTCCCCAACATAGACGAAGAGGACGATGATGACGATG
ACTCCCTCTTCGTCAAACAACCCGCCAAATCTACTACCAGTACTAGATCT
CGCAGAACAACAACAGCAGCAACAGCGAAAGCAACAACACAACGCCGCAA
AGCTCCATCTCCAGCACCTTCATCCAATACAGTTGGAGGAACCGGACAAG
CTACGCGAAGAACTCGGGGCAAGCAAGCAACCCAGACAACGCTGAATTTT
GTAGGCTCGCAAAGTAG
back to top

Coding sequence (CDS) from alignment at NKJJ01000022.1:3434845..3437161-

>CAN33_47645-T1 ID=CAN33_47645-T1|Name=CAN33_47645-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=5796bp|location=Sequence derived from alignment at NKJJ01000022.1:3434845..3437161- (Aspergillus niger FDAARGOS_311)
TAGACTCGGAAACGATCCGCATTCTTGTCTCTACAGACAACCATGTCGGA
TACAATGAACGGGATCCCATCCGTGGTGATGACAGCTGGAAAAGCTTTCA
TGAGGTAATGTGTCTGGCCAAGGAACAAGATGTGGACATGGTGCTTCTGG
CAGGCGATCTCTTCCACGAGAACAAGCCATCGCGCAAGTCCATGTACCAA
GTTATGCGCTCCATTCGTATGAACTGTCTCGGCGATAAGCCTTGCGAACT
GGAGATGCTGAGTGATGCGAGCGAAAATTTTCAGGGTGCTTTCAATCACG
TGAACTACGAGGATTTGGATATCAATGTGGCTATCCCCATCTTTTCAATT
CACGGCAATCACGATGATCCGTCCGGAGAAGGACATCTGGCTGCATTGGA
CCTACTTCAGGTGTCGGGGTTGATCAATTACTATGGACGGACCCCCGAGT
CGGACAATATCCAGATTAAACCGGTTTTGCTCCAGAAAGGACGCACGAAA
CTTGCTCTCTACGGTATGAGCAACGTCCGCGATGAGCGTCTATTTCGCAC
ATTTCGAGACGGCAAGGTCAAGTTCTACCAACCCTCAATCCAGAAAGAAG
ACTGGTTCAACTTGATGTCTGTTCATCAGAACCATTATGCACACACTGAG
ACAGGCTATTTGCCCGAGAATTTCCTACCCGAATTCCTGGACCTCGTCGT
CTGGGGCCACGAACACGAGTGTTTAATCAACCCACGATTGAACCCCGAGA
CCAAGTTTCACGTCATGCAGCCCGGCTCATCCGTGGCGACATCCCTGGTT
CCTGGCGAATCAGTGGCCAAACATGTAGCCATCCTCAGTATCACAGGCCG
GGAGTTCAAATGCGAGCCCATCCGTCTCAAGTCCGTCCGCCCATTCGCCA
TGCGCGAAATCATTCTCTCCGAAGAAAAAGGCGCGCAAAAGCTTGCCCGC
AAGGACAACAACCGCACGGAAGTGACTCGCCTTCTCATGGAGATTGTCGA
GGAACTGATCGAAGAAGCGAAAACGGAATGGCTAGAAATGCAAGATGAGA
CAGCAGAAGACGAAGAGCTAGAAGTCCCACTACCACTAGTGCGACTGCGC
GTTGAAACCTCAACGCCAGAAGGAGGCAGTTATGACTGTGAGAACCCGCA
GCGATTCTCCAACCGCTTCGTAGGCAAGGTCGCCAATGTGAACGATGTCG
TCCAGTTCTACCGCAAGAAGAAAAACACCAACAGTACGCGCAAACCGGGT
GAAACCGACCTCGACGAGACGGCAGTCTCACACCTCTCCACCCTCGACAC
CGTCAAAGTCGAACAATTAGTGCGCGACTTCCTCTCCGCACAGTCTCTGA
CCATCCTCCCACAGAACTCCTTCGGCGACGCAGTCGCCCAATTCATCGAC
AAAGACGACAAACATGCCTTGGAAATGTTCGTCAACGAATCACTCGAGAG
CCAAATGAAGCACTTACTGGCCCTAGATCGCGACCACGATCTAGAGGAAG
AAGAAGAAATTGCAGAAAGCTCCCTACAAAAAGCCATGGAGAGATATCGC
ACTCAAATGGAAGACATGTTCTCCCGCGGTATCAAGAAACGCACCCGCGG
CAAGAAGCGCTTCAAGCCCAAGCCCGACGGCTGGGACACCGAATTCGACG
GTGTCTGGGAGGACCAACCCGGCGCTCTCATCCACTCCGACAACGAGGAC
GGCGATCCCAATGAAGACGTAGCCGGCGAGGATGGCGCCGAACCACCCAC
CACATCACGAGCAACATCATCCACACGCGGCCGCGGCCGAGGCCGTGGCG
GTAGAGCCACCACCACTGCCGCTACAACCCGCAAAACCGCCACCACAAAA
GCAGCACCTGCTACTACTACTTCAAAGAAAACCACAACCTCTACTAAAAG
CCGTAAACGCCGCACCATGCCCAGATTAGATGTAGACTCGGAAACGATCC
GCATTCTTGTCTCTACAGACAACCATGTCGGATACAATGAACGGGATCCC
ATCCGTGGTGATGACAGCTGGAAAAGCTTTCATGAGGTAATGTGTCTGGC
CAAGGAACAAGATGTGGACATGGTGCTTCTGGCAGGCGATCTCTTCCACG
AGAACAAGCCATCGCGCAAGTCCATGTACCAAGTTATGCGCTCCATTCGT
ATGAACTGTCTCGGCGATAAGCCTTGCGAACTGGAGATGCTGAGTGATGC
GAGCGAAAATTTTCAGGGTGCTTTCAATCACGTGAACTACGAGGATTTGG
ATATCAATGTGGCTATCCCCATCTTTTCAATTCACGGCAATCACGATGAT
CCGTCCGGAGAAGGACATCTGGCTGCATTGGACCTACTTCAGGTGTCGGG
GTTGATCAATTACTATGGACGGACCCCCGAGTCGGACAATATCCAGATTA
AACCGGTTTTGCTCCAGAAAGGACGCACGAAACTTGCTCTCTACGGTATG
AGCAACGTCCGCGATGAGCGTCTATTTCGCACATTTCGAGACGGCAAGGT
CAAGTTCTACCAACCCTCAATCCAGAAAGAAGACTGGTTCAACTTGATGT
CTGTTCATCAGAACCATTATGCACACACTGAGACAGGCTATTTGCCCGAG
AATTTCCTACCCGAATTCCTGGACCTCGTCGTCTGGGGCCACGAACACGA
GTGTTTAATCAACCCACGATTGAACCCCGAGACCAAGTTTCACGTCATGC
AGCCCGGCTCATCCGTGGCGACATCCCTGGTTCCTGGCGAATCAGTGGCC
AAACATGTAGCCATCCTCAGTATCACAGGCCGGGAGTTCAAATGCGAGCC
CATCCGTCTCAAGTCCGTCCGCCCATTCGCCATGCGCGAAATCATTCTCT
CCGAAGAAAAAGGCGCGCAAAAGCTTGCCCGCAAGGACAACAACCGCACG
GAAGTGACTCGCCTTCTCATGGAGATTGTCGAGGAACTGATCGAAGAAGC
GAAAACGGAATGGCTAGAAATGCAAGATGAGACAGCAGAAGACGAAGAGC
TAGAAGTCCCACTACCACTAGTGCGACTGCGCGTTGAAACCTCAACGCCA
GAAGGAGGCAGTTATGACTGTGAGAACCCGCAGCGATTCTCCAACCGCTT
CGTAGGCAAGGTCGCCAATGTGAACGATGTCGTCCAGTTCTACCGCAAGA
AGAAAAACACCAACAGTACGCGCAAACCGGGTGAAACCGACCTCGACGAG
ACGGCAGTCTCACACCTCTCCACCCTCGACACCGTCAAAGTCGAACAATT
AGTGCGCGACTTCCTCTCCGCACAGTCTCTGACCATCCTCCCACAGAACT
CCTTCGGCGACGCAGTCGCCCAATTCATCGACAAAGACGACAAACATGCC
TTGGAAATGTTCGTCAACGAATCACTCGAGAGCCAAATGAAGCACTTACT
GGCCCTAGATCGCGACCACGATCTAGAGGAAGAAGAAGAAATTGCAGAAA
GCTCCCTACAAAAAGCCATGGAGAGATATCGCACTCAAATGGAAGACATG
TTCTCCCGCGGTATCAAGAAACGCACCCGCGGCAAGAAGCGCTTCAAGCC
CAAGCCCGACGGCTGGGACACCGAATTCGACGGTGTCTGGGAGGACCAAC
CCGGCGCTCTCATCCACTCCGACAACGAGGACGGCGATCCCAATGAAGAC
GTAGCCGGCGAGGATGGCGCCGAACCACCCACCACATCACGAGCAACATC
ATCCACACGCGGCCGCGGCCGAGGCCGTGGCGGTAGAGCCACCACCACTG
CCGCTACAACCCGCAAAACCGCCACCACAAAAGCAGCACCTGCTACTACT
ACTTCAAAGAAAACCACAACCTCTACTAAAAGCCGTAAACGCCGCACCAT
GCCCAGATTAGATGTAGACTCGGAAACGATCCGCATTCTTGTCTCTACAG
ACAACCATGTCGGATACAATGAACGGGATCCCATCCGTGGTGATGACAGC
TGGAAAAGCTTTCATGAGGTAATGTGTCTGGCCAAGGAACAAGATGTGGA
CATGGTGCTTCTGGCAGGCGATCTCTTCCACGAGAACAAGCCATCGCGCA
AGTCCATGTACCAAGTTATGCGCTCCATTCGTATGAACTGTCTCGGCGAT
AAGCCTTGCGAACTGGAGATGCTGAGTGATGCGAGCGAAAATTTTCAGGG
TGCTTTCAATCACGTGAACTACGAGGATTTGGATATCAATGTGGCTATCC
CCATCTTTTCAATTCACGGCAATCACGATGATCCGTCCGGAGAAGGACAT
CTGGCTGCATTGGACCTACTTCAGGTGTCGGGGTTGATCAATTACTATGG
ACGGACCCCCGAGTCGGACAATATCCAGATTAAACCGGTTTTGCTCCAGA
AAGGACGCACGAAACTTGCTCTCTACGGTATGAGCAACGTCCGCGATGAG
CGTCTATTTCGCACATTTCGAGACGGCAAGGTCAAGTTCTACCAACCCTC
AATCCAGAAAGAAGACTGGTTCAACTTGATGTCTGTTCATCAGAACCATT
ATGCACACACTGAGACAGGCTATTTGCCCGAGAATTTCCTACCCGAATTC
CTGGACCTCGTCGTCTGGGGCCACGAACACGAGTGTTTAATCAACCCACG
ATTGAACCCCGAGACCAAGTTTCACGTCATGCAGCCCGGCTCATCCGTGG
CGACATCCCTGGTTCCTGGCGAATCAGTGGCCAAACATGTAGCCATCCTC
AGTATCACAGGCCGGGAGTTCAAATGCGAGCCCATCCGTCTCAAGTCCGT
CCGCCCATTCGCCATGCGCGAAATCATTCTCTCCGAAGAAAAAGGCGCGC
AAAAGCTTGCCCGCAAGGACAACAACCGCACGGAAGTGACTCGCCTTCTC
ATGGAGATTGTCGAGGAACTGATCGAAGAAGCGAAAACGGAATGGCTAGA
AATGCAAGATGAGACAGCAGAAGACGAAGAGCTAGAAGTCCCACTACCAC
TAGTGCGACTGCGCGTTGAAACCTCAACGCCAGAAGGAGGCAGTTATGAC
TGTGAGAACCCGCAGCGATTCTCCAACCGCTTCGTAGGCAAGGTCGCCAA
TGTGAACGATGTCGTCCAGTTCTACCGCAAGAAGAAAAACACCAACAGTA
CGCGCAAACCGGGTGAAACCGACCTCGACGAGACGGCAGTCTCACACCTC
TCCACCCTCGACACCGTCAAAGTCGAACAATTAGTGCGCGACTTCCTCTC
CGCACAGTCTCTGACCATCCTCCCACAGAACTCCTTCGGCGACGCAGTCG
CCCAATTCATCGACAAAGACGACAAACATGCCTTGGAAATGTTCGTCAAC
GAATCACTCGAGAGCCAAATGAAGCACTTACTGGCCCTAGATCGCGACCA
CGATCTAGAGGAAGAAGAAGAAATTGCAGAAAGCTCCCTACAAAAAGCCA
TGGAGAGATATCGCACTCAAATGGAAGACATGTTCTCCCGCGGTATCAAG
AAACGCACCCGCGGCAAGAAGCGCTTCAAGCCCAAGCCCGACGGCTGGGA
CACCGAATTCGACGGTGTCTGGGAGGACCAACCCGGCGCTCTCATCCACT
CCGACAACGAGGACGGCGATCCCAATGAAGACGTAGCCGGCGAGGATGGC
GCCGAACCACCCACCACATCACGAGCAACATCATCCACACGCGGCCGCGG
CCGAGGCCGTGGCGGTAGAGCCACCACCACTGCCGCTACAACCCGCAAAA
CCGCCACCACAAAAGCAGCACCTGCTACTACTACTTCAAAGAAAACCACA
ACCTCTACTAAAAGCCGTAAACGCCGCACCATGCCCAGATTAGATG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0030870Mre11 complex
GO:0005634nucleus
Vocabulary: Biological Process
TermDefinition
GO:0006302double-strand break repair
Vocabulary: Molecular Function
TermDefinition
GO:00084083'-5' exonuclease activity
GO:0016787hydrolase activity
GO:0004519endonuclease activity
GO:0030145manganese ion binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
MUS23CAN33_47645Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_47645-T1CAN33_47645-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_47645-T1.cdsCAN33_47645-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_47645-T1.exon3CAN33_47645-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_47645-T1.exon2CAN33_47645-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_47645-T1.exon1CAN33_47645-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteBUSCO:EOG09262GVX
DBxrefInterPro:IPR041796
DBxrefInterPro:IPR003701
DBxrefInterPro:IPR038487
DBxrefInterPro:IPR004843
DBxrefInterPro:IPR029052
DBxrefInterPro:IPR007281
DBxrefPFAM:PF04152
DBxrefPFAM:PF00149
ProductDouble-strand break repair protein mus-23
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000022.1supercontigNKJJ01000022.1:3434845..3437161 -
Powered by Drupal