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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000022.1:3790064..3791927+ Legend: exonpolypeptideCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_48205-T1 ID=CAN33_48205-T1|Name=CAN33_48205-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1864bp|location=Sequence derived from alignment at NKJJ01000022.1:3790064..3791927+ (Aspergillus niger FDAARGOS_311)
ATGAAAGTCCAGCAGCTTGTCATATATGTCCCTGCCCTTGGCGAGCAGAA
AATTCTTCAAGGTCTTTATGCTCTTTCCGCACAGTTGGTCTGTCTCGGCA
GGTTCTTCGAGCAGGTTAACATCAAAAAGTGGATGCCTACACTCGACATG
TTCAATTGTCGGTAATGCTGGCTCCATTATGCCTATTGCTTCGGCGACCT
TCGGTAGTTTTGCGGAGGGGAGCTTTCCTGAGTGAATAAAGAGACTGATA
TATAGCTTTTGGAAGGCACACAAGACAAAGCAGCTGCTTTCGAGATGCTA
GAAGGTCTGGAGAGACCGGTCATTCCGGCCAGATTTATAGCATTGGGAGA
TCTCATGTTACACAGTGATGAAGGCTCAGATATACTGTATTTCACTGCAA
TATCCGTCATTTACTGTGTATTTGTGAGGAGTGAAAACATAGTCAGGAAA
ACTGCAGAGTGCAGAGTGCAATTGACCGATTTGGCTGGCATATTCCTTGC
AATCAGCCAAGGAGAATGTCAGAGCAATCATTCTCAATAGATGTTTCATA
ATTCGATTATCGTCTGAAGGCATATCCCAGCTACACCAGTGATCACATTG
GGGAGATATCTGCTAACGAGGCAAGTTGAAGATGAAGATGAGGTGAATCC
CGTAGTATCGCGATGTTCTATACAGTATAACTATGCCTCAGGCATAGGAT
TACTAATACACCACTGTACACCAAATACCGTACCAAAGCAGCCGTATCAC
GTGCACAGAACAGTCAAGTGACAATATACCCTATTCAGGAATAGCCCCAA
GCACAAGCGAGCCCTGAATCCCACCATACCCAAATAGGCTAGAGCCCAGC
TTACCCGATCCCACAACGGGCGAGAGCAAAGTTGGAAGAAGCACTCGCAA
GCCCGCCTCGATTTCACCTCCTTCTCATCCCTCTCGCCTGTCGACAATCA
ATCGCGGTCCTTCGCGCCATCGCCCATCATGTGTACGTGAATGACCCTGA
AATCGGATTTCCAACCCTGCCTATTTGATTTCCGTCGCTGTTCGTTTTTT
GCCGGTCATTTTTGGAGGAAATATTCATCGCTGGGGTTTTGGAGAAAAGA
GAAAAGGACTATCATCGCGGATATAGACGGCAGCAACAGCAGCGACGGAA
TCATTGAATATTTTTCATCATCATCATGGCAACAACCGATTTCTTAAGAC
AGAAAGGCTGACTTGCGGTTTTTGGAATTTTTTAGCGCTCGTGTCCGGCG
AGAAGACGAACTTCCAGTACATTCTGCGTCTGCTCAACACCAATGTTGAC
GGCAAGCAGAAGATCATGTACGCCTTGACCCAGATCAAGGGTGTTGGTCG
CCGTTACTCCAACTTGGTCTGCAAGAAGGCCGACGTTGACCTCAGCAAGC
GGTACGTTTACACTACACTACATTTCTCGATGGTTCGAATGCGAGGCAGG
GGATAAAAGAGTGGGAGTGGATTCCACGGACAAGAGAAGGGAGAAGAGCA
AACACCACGAGGTTGAAAGGGCAGGAGATACAAGAACAGCCAAGTTGACT
TTCCTACTTTCTACAGCGCTGGTGAACTCACCACCGAAGAGCTCGAGCGT
ATCGTCACCATCCTCCAGAGCCCCACCCAGTACAAGATCCCCACCTGGTT
CCTCAACAGACAGCGCGACATCACCGATGGCAAGGACTCCCAGGTCGTCT
CCAACTCCCTCGACAGCAAGATCCGTGAGGATCTCGAGCGCCTGAAGAAG
ATCCGCTCCCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGG
TCAGCACACCAAGACCACCGGTCGTCGTGGACGCACCGTCGGTGTCAGCA
AGAAGAAGAACTAA back to topCoding sequence (CDS) from alignment at NKJJ01000022.1:3790064..3791927+ >CAN33_48205-T1 ID=CAN33_48205-T1|Name=CAN33_48205-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1863bp|location=Sequence derived from alignment at NKJJ01000022.1:3790064..3791927+ (Aspergillus niger FDAARGOS_311)
ATGAAAGTCCAGCAGCTTGTCATATATGTCCCTGCCCTTGGCGAGCAGAA
AATTCTTCAAGGTCTTTATGCTCTTTCCGCACAGTTGGTCTGTCTCGGCA
GGTTCTTCGAGCAGGTTAACATCAAAAAGTGGATGCCTACACTCGACATG
TTCAATTCGCTCGTGTCCGGCGAGAAGACGAACTTCCAGTACATTCTGCG
TCTGCTCAACACCAATGTTGACGGCAAGCAGAAGATCATGTACGCCTTGA
CCCAGATCAAGGGTGTTGGTCGCCGTTACTCCAACTTGGTCTGCAAGAAG
GCCGACGTTGACCTCAGCAAGCGCGCTGGTGAACTCACCACCGAAGAGCT
CGAGCGTATCGTCACCATCCTCCAGAGCCCCACCCAGTACAAGATCCCCA
CCTGGTTCCTCAACAGACAGCGCGACATCACCGATGGCAAGGACTCCCAG
GTCGTCTCCAACTCCCTCGACAGCAAGATCCGTGAGGATCTCGAGCGCCT
GAAGAAGATCCGCTCCCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTG
TCCGCGGTCAGCACACCAAGACCACCGGTCGTCGTGGACGCACCGTCGGT
GTCAGCAAGAAGAAGAACTAAATGAAAGTCCAGCAGCTTGTCATATATGT
CCCTGCCCTTGGCGAGCAGAAAATTCTTCAAGGTCTTTATGCTCTTTCCG
CACAGTTGGTCTGTCTCGGCAGGTTCTTCGAGCAGGTTAACATCAAAAAG
TGGATGCCTACACTCGACATGTTCAATTCGCTCGTGTCCGGCGAGAAGAC
GAACTTCCAGTACATTCTGCGTCTGCTCAACACCAATGTTGACGGCAAGC
AGAAGATCATGTACGCCTTGACCCAGATCAAGGGTGTTGGTCGCCGTTAC
TCCAACTTGGTCTGCAAGAAGGCCGACGTTGACCTCAGCAAGCGCGCTGG
TGAACTCACCACCGAAGAGCTCGAGCGTATCGTCACCATCCTCCAGAGCC
CCACCCAGTACAAGATCCCCACCTGGTTCCTCAACAGACAGCGCGACATC
ACCGATGGCAAGGACTCCCAGGTCGTCTCCAACTCCCTCGACAGCAAGAT
CCGTGAGGATCTCGAGCGCCTGAAGAAGATCCGCTCCCACCGTGGTCTCC
GTCACTACTGGGGTCTCCGTGTCCGCGGTCAGCACACCAAGACCACCGGT
CGTCGTGGACGCACCGTCGGTGTCAGCAAGAAGAAGAACTAAATGAAAGT
CCAGCAGCTTGTCATATATGTCCCTGCCCTTGGCGAGCAGAAAATTCTTC
AAGGTCTTTATGCTCTTTCCGCACAGTTGGTCTGTCTCGGCAGGTTCTTC
GAGCAGGTTAACATCAAAAAGTGGATGCCTACACTCGACATGTTCAATTC
GCTCGTGTCCGGCGAGAAGACGAACTTCCAGTACATTCTGCGTCTGCTCA
ACACCAATGTTGACGGCAAGCAGAAGATCATGTACGCCTTGACCCAGATC
AAGGGTGTTGGTCGCCGTTACTCCAACTTGGTCTGCAAGAAGGCCGACGT
TGACCTCAGCAAGCGCGCTGGTGAACTCACCACCGAAGAGCTCGAGCGTA
TCGTCACCATCCTCCAGAGCCCCACCCAGTACAAGATCCCCACCTGGTTC
CTCAACAGACAGCGCGACATCACCGATGGCAAGGACTCCCAGGTCGTCTC
CAACTCCCTCGACAGCAAGATCCGTGAGGATCTCGAGCGCCTGAAGAAGA
TCCGCTCCCACCGTGGTCTCCGTCACTACTGGGGTCTCCGTGTCCGCGGT
CAGCACACCAAGACCACCGGTCGTCGTGGACGCACCGTCGGTGTCAGCAA
GAAGAAGAACTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005840 | ribosome |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
| GO:0003723 | RNA binding |
| GO:0003735 | structural constituent of ribosome |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006412 | translation |
Relationships
This mRNA is a part of the following gene feature(s):
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264YEG |
| DBxref | InterPro:IPR010979 |
| DBxref | InterPro:IPR018269 |
| DBxref | InterPro:IPR001892 |
| DBxref | InterPro:IPR027437 |
| DBxref | PFAM:PF00416 |
| Product | ribosomal 40S subunit protein S18B |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000022.1 | supercontig | NKJJ01000022.1:3790064..3791927 + |
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