You are here

Home

CAN33_4865-T1, CAN33_4865-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_4865-T1
Unique NameCAN33_4865-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000019.1:680485..681896-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_4865-T1 ID=CAN33_4865-T1|Name=CAN33_4865-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1412bp|location=Sequence derived from alignment at NKJJ01000019.1:680485..681896- (Aspergillus niger FDAARGOS_311)
ATGGCACCGACTGCTTGTGTACCTGCTGAAGTATGCACTCCTAAATACTA
CCAGGAGAAACACGACTATAATCTCAATTGGGATCATGGTCAATTCAGCA
ATCATGGAGGGGACGATTTATCGCAATCTAGGTTGGCTGCCAAGGAACTA
GTCTTGGACATCCTGAAGAAGCGCGCAGCTGAGGTCAATGTGGACAGCTG
CGCGCCAGGAGAGGAGGACCCGTTTTACGTGGCAGATATGGGGGAGGTCT
ACCGCCAGCATCTGCGCTGGAAAATGAACTTGAGCCGTGTTCGGCCTTTC
TACGGTAAGGATATGAATGCACAACTGGGATTTTCATGACAGCGGCTAAC
AGTGAGTCAATAGCGGTCAAGTGCAACCCCGACCCGGAGATCCTTCGCCT
CATGGCTAAACTCGGAAACGGTTTTGATTGTGCGTCCAAGGCCGAGATCG
ATATGGCCCTCGAGACCGGCGTCGACCCAAGCCGCATCATCTACGCGCAG
CCCTGCAAGACCAAGTCCTATCTGCGCTACGCCGCCCAGGTGGGCGTCAA
GCAGATGACCTTTGACAACGCCGACGAGCTGTACAAGATCAAGGCCAACT
ACCCGGACGCCGAGCTTTATCTGCGCATCCTCACGGATGATTCGAACAGC
TTGTGCCAGTTCAGCATGAAATTCGGAGCTTCCTTGGACGTTGCTCGCCA
GCTCCTCGAATTGGCGCACCAGCTCGAGCTGAAGGTGGTCGGCGTGAGTT
TTCACGTCGGATCAGGCGCTGAGGATCCTAAGGCTTTCCTGAAAGCCGTG
CAGGACGCGCGCCTTGTGTTTGATCAAGCCGCAGAGATTGGCCACGAACT
GCACACTTTGGATGTCGGCGGAGGTTTCTCCCAGGACACTTTTGAGAAAT
TCGCCGGCGTCCTGAGCGAGGCGTTGGAGACCTATTTCCCGCCCAACATC
CGGGTCATTGCCGAACCGGGTCGCTACTATGTTGCCAATGCGTTCACTCT
GGCGGCCAACATCATTGCTCGCCGTGAGGTGCGCGACCCGGAGGACCCGG
CCAACGACGCCTACATGCTGTATCTCAACGACGGGGTGTATGGAAACTTC
TCCAACATCATCTTTGACCACCAGCACCCCGTGGCCCAGGTCCTGACCTG
TGCGTCGGCCGCTAACTCCCCTTATGCTGCGACTTCGGGGGGTGTCACGT
ACTCCATCTGGGGGCCGACCTGTGACGGCATTGATGTTATCTCCAAGCGC
ATTGCGCTGCCAGCTCTGCTGGAAGTTGGAGATTGGCTTTACTTCGAGGA
GATGGGAGCCTACACCAAGTGTAGCGCGACCCGCTTCAACGGCTTTTCGG
ACAACCACGAGGTGATCTACATCTCCAGCGAAGCCGGGGCTTCTGCGCTC
CTCGAGTATTAG
back to top

Coding sequence (CDS) from alignment at NKJJ01000019.1:680485..681896-

>CAN33_4865-T1 ID=CAN33_4865-T1|Name=CAN33_4865-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2706bp|location=Sequence derived from alignment at NKJJ01000019.1:680485..681896- (Aspergillus niger FDAARGOS_311)
CGGTCAAGTGCAACCCCGACCCGGAGATCCTTCGCCTCATGGCTAAACTC
GGAAACGGTTTTGATTGTGCGTCCAAGGCCGAGATCGATATGGCCCTCGA
GACCGGCGTCGACCCAAGCCGCATCATCTACGCGCAGCCCTGCAAGACCA
AGTCCTATCTGCGCTACGCCGCCCAGGTGGGCGTCAAGCAGATGACCTTT
GACAACGCCGACGAGCTGTACAAGATCAAGGCCAACTACCCGGACGCCGA
GCTTTATCTGCGCATCCTCACGGATGATTCGAACAGCTTGTGCCAGTTCA
GCATGAAATTCGGAGCTTCCTTGGACGTTGCTCGCCAGCTCCTCGAATTG
GCGCACCAGCTCGAGCTGAAGGTGGTCGGCGTGAGTTTTCACGTCGGATC
AGGCGCTGAGGATCCTAAGGCTTTCCTGAAAGCCGTGCAGGACGCGCGCC
TTGTGTTTGATCAAGCCGCAGAGATTGGCCACGAACTGCACACTTTGGAT
GTCGGCGGAGGTTTCTCCCAGGACACTTTTGAGAAATTCGCCGGCGTCCT
GAGCGAGGCGTTGGAGACCTATTTCCCGCCCAACATCCGGGTCATTGCCG
AACCGGGTCGCTACTATGTTGCCAATGCGTTCACTCTGGCGGCCAACATC
ATTGCTCGCCGTGAGGTGCGCGACCCGGAGGACCCGGCCAACGACGCCTA
CATGCTGTATCTCAACGACGGGGTGTATGGAAACTTCTCCAACATCATCT
TTGACCACCAGCACCCCGTGGCCCAGGTCCTGACCTGTGCGTCGGCCGCT
AACTCCCCTTATGCTGCGACTTCGGGGGGTGTCACGTACTCCATCTGGGG
GCCGACCTGTGACGGCATTGATGTTATCTCCAAGCGCATTGCGCTGCCAG
CTCTGCTGGAAGTTGGAGATTGGCTTTACTTCGAGGAGATGGGAGCCTAC
ACCAAGTGTAGCGCGACCCGCTTCAACGGCTTTTCGGACAACCACGAGGT
GATCTACATCTCCAGCGAAGCCGGGGCTTCTGCGCTCCTCGAGTATTAGA
TGGCACCGACTGCTTGTGTACCTGCTGAAGTATGCACTCCTAAATACTAC
CAGGAGAAACACGACTATAATCTCAATTGGGATCATGGTCAATTCAGCAA
TCATGGAGGGGACGATTTATCGCAATCTAGGTTGGCTGCCAAGGAACTAG
TCTTGGACATCCTGAAGAAGCGCGCAGCTGAGGTCAATGTGGACAGCTGC
GCGCCAGGAGAGGAGGACCCGTTTTACGTGGCAGATATGGGGGAGGTCTA
CCGCCAGCATCTGCGCTGGAAAATGAACTTGAGCCGTGTTCGGCCTTTCT
ACGCGGTCAAGTGCAACCCCGACCCGGAGATCCTTCGCCTCATGGCTAAA
CTCGGAAACGGTTTTGATTGTGCGTCCAAGGCCGAGATCGATATGGCCCT
CGAGACCGGCGTCGACCCAAGCCGCATCATCTACGCGCAGCCCTGCAAGA
CCAAGTCCTATCTGCGCTACGCCGCCCAGGTGGGCGTCAAGCAGATGACC
TTTGACAACGCCGACGAGCTGTACAAGATCAAGGCCAACTACCCGGACGC
CGAGCTTTATCTGCGCATCCTCACGGATGATTCGAACAGCTTGTGCCAGT
TCAGCATGAAATTCGGAGCTTCCTTGGACGTTGCTCGCCAGCTCCTCGAA
TTGGCGCACCAGCTCGAGCTGAAGGTGGTCGGCGTGAGTTTTCACGTCGG
ATCAGGCGCTGAGGATCCTAAGGCTTTCCTGAAAGCCGTGCAGGACGCGC
GCCTTGTGTTTGATCAAGCCGCAGAGATTGGCCACGAACTGCACACTTTG
GATGTCGGCGGAGGTTTCTCCCAGGACACTTTTGAGAAATTCGCCGGCGT
CCTGAGCGAGGCGTTGGAGACCTATTTCCCGCCCAACATCCGGGTCATTG
CCGAACCGGGTCGCTACTATGTTGCCAATGCGTTCACTCTGGCGGCCAAC
ATCATTGCTCGCCGTGAGGTGCGCGACCCGGAGGACCCGGCCAACGACGC
CTACATGCTGTATCTCAACGACGGGGTGTATGGAAACTTCTCCAACATCA
TCTTTGACCACCAGCACCCCGTGGCCCAGGTCCTGACCTGTGCGTCGGCC
GCTAACTCCCCTTATGCTGCGACTTCGGGGGGTGTCACGTACTCCATCTG
GGGGCCGACCTGTGACGGCATTGATGTTATCTCCAAGCGCATTGCGCTGC
CAGCTCTGCTGGAAGTTGGAGATTGGCTTTACTTCGAGGAGATGGGAGCC
TACACCAAGTGTAGCGCGACCCGCTTCAACGGCTTTTCGGACAACCACGA
GGTGATCTACATCTCCAGCGAAGCCGGGGCTTCTGCGCTCCTCGAGTATT
AGATGGCACCGACTGCTTGTGTACCTGCTGAAGTATGCACTCCTAAATAC
TACCAGGAGAAACACGACTATAATCTCAATTGGGATCATGGTCAATTCAG
CAATCATGGAGGGGACGATTTATCGCAATCTAGGTTGGCTGCCAAGGAAC
TAGTCTTGGACATCCTGAAGAAGCGCGCAGCTGAGGTCAATGTGGACAGC
TGCGCGCCAGGAGAGGAGGACCCGTTTTACGTGGCAGATATGGGGGAGGT
CTACCGCCAGCATCTGCGCTGGAAAATGAACTTGAGCCGTGTTCGGCCTT
TCTACG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0006596polyamine biosynthetic process
Vocabulary: Molecular Function
TermDefinition
GO:0003824catalytic activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SPE1CAN33_4865Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_4865-T1CAN33_4865-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_4865-T1.cdsCAN33_4865-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_4865-T1.exon2CAN33_4865-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_4865-T1.exon1CAN33_4865-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteBUSCO:EOG09261V03
DBxrefInterPro:IPR022657
DBxrefInterPro:IPR022653
DBxrefInterPro:IPR022643
DBxrefInterPro:IPR022644
DBxrefInterPro:IPR009006
DBxrefInterPro:IPR029066
DBxrefInterPro:IPR002433
DBxrefInterPro:IPR000183
DBxrefPFAM:PF00278
DBxrefPFAM:PF02784
ProductOrnithine decarboxylase
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000019.1supercontigNKJJ01000019.1:680485..681896 -
Powered by Drupal