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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000022.1:4165358..4166236- Legend: CDSpolypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_48790-T1 ID=CAN33_48790-T1|Name=CAN33_48790-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=879bp|location=Sequence derived from alignment at NKJJ01000022.1:4165358..4166236- (Aspergillus niger FDAARGOS_311)
ATGTCGCATCTTCAACAGCAGCTGAAGAGCTTCAACGCTGGTGTTATGGA
CTATGCAGCCCGAATGCCCCAGCAGCGTCGTTTCGTGCACAACACCAACT
CAGCGAGCAGTTCCCAGCTCCCCTCCTCTACGTCTACACCTACTCCAAGC
GACGATGCGAGACGCAAACGGCACGATGCAGATATTGTTTACTCGCAGCC
CGCCAACACCGGCACAGGAAAGGATATCATGACGCAGGTTGTCTTTGCAA
TCGAGCACATGAAGTCCAAGGGAGTTCCGCTCAAGTTTGCCGATATCGTC
TCGTACCTGTCCCTTCAACATCGGGCCAACGACCAAGGCTATGTTCAGGC
ACTCCGGAGCATTCTGCAGATGCACGAGAAGGTCCAGTACGATCCCAGCG
GCGCAAACGGCGAAGGCACTTTCAGCTTCCGTCCCCCGCACAACATCCGT
ACCGCCGAACAGCTCCTCCAGAAACTCCAGTCCCAGTCGACCGGTGCGGG
GATGAGCGTACGTGAACTTCGGGAGGGTTGGCCAAATGTGGAGGACACGA
TCAACAAGCTCGAGAAGGAAGGCAAGCTGCTTGTAACTCGGAACAAGAAG
GACGATCATGCCAAGATGGTTTGGGCCAATGATCCATCCTTGATCCAGCA
TTTTGATCCTGAGTTCCGTCAGATCTGGGAGAAGATCAAGGTTCCTGATC
AGCAAGCTGTTAAGGAAGAGCTGGAAAAGGCGGGTATCACACCTACCAAC
AAGAACAAGGTTGTCAAGGCCCGGCCAAAGATTGAGAACAAGAAGGTGAA
GAAGCCACGACGGAGTGGGAAGACTACCAATACTCACATGATGGGCGTTT
TGAGGGATTATTCGCACCTCAAACGGTAG back to topCoding sequence (CDS) from alignment at NKJJ01000022.1:4165358..4166236- >CAN33_48790-T1 ID=CAN33_48790-T1|Name=CAN33_48790-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=879bp|location=Sequence derived from alignment at NKJJ01000022.1:4165358..4166236- (Aspergillus niger FDAARGOS_311)
ATGTCGCATCTTCAACAGCAGCTGAAGAGCTTCAACGCTGGTGTTATGGA
CTATGCAGCCCGAATGCCCCAGCAGCGTCGTTTCGTGCACAACACCAACT
CAGCGAGCAGTTCCCAGCTCCCCTCCTCTACGTCTACACCTACTCCAAGC
GACGATGCGAGACGCAAACGGCACGATGCAGATATTGTTTACTCGCAGCC
CGCCAACACCGGCACAGGAAAGGATATCATGACGCAGGTTGTCTTTGCAA
TCGAGCACATGAAGTCCAAGGGAGTTCCGCTCAAGTTTGCCGATATCGTC
TCGTACCTGTCCCTTCAACATCGGGCCAACGACCAAGGCTATGTTCAGGC
ACTCCGGAGCATTCTGCAGATGCACGAGAAGGTCCAGTACGATCCCAGCG
GCGCAAACGGCGAAGGCACTTTCAGCTTCCGTCCCCCGCACAACATCCGT
ACCGCCGAACAGCTCCTCCAGAAACTCCAGTCCCAGTCGACCGGTGCGGG
GATGAGCGTACGTGAACTTCGGGAGGGTTGGCCAAATGTGGAGGACACGA
TCAACAAGCTCGAGAAGGAAGGCAAGCTGCTTGTAACTCGGAACAAGAAG
GACGATCATGCCAAGATGGTTTGGGCCAATGATCCATCCTTGATCCAGCA
TTTTGATCCTGAGTTCCGTCAGATCTGGGAGAAGATCAAGGTTCCTGATC
AGCAAGCTGTTAAGGAAGAGCTGGAAAAGGCGGGTATCACACCTACCAAC
AAGAACAAGGTTGTCAAGGCCCGGCCAAAGATTGAGAACAAGAAGGTGAA
GAAGCCACGACGGAGTGGGAAGACTACCAATACTCACATGATGGGCGTTT
TGAGGGATTATTCGCACCTCAAACGGTAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0005673 | transcription factor TFIIE complex |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006367 | transcription initiation from RNA polymerase II promoter |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264CND |
| DBxref | InterPro:IPR040501 |
| DBxref | InterPro:IPR003166 |
| DBxref | InterPro:IPR016656 |
| DBxref | PFAM:PF02186 |
| DBxref | PFAM:PF18121 |
| Product | TFIIE beta subunit core domain family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000022.1 | supercontig | NKJJ01000022.1:4165358..4166236 - |
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