You are here

Home

CAN33_50235-T1, CAN33_50235-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_50235-T1
Unique NameCAN33_50235-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000020.1:91818..93392-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_50235-T1 ID=CAN33_50235-T1|Name=CAN33_50235-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1575bp|location=Sequence derived from alignment at NKJJ01000020.1:91818..93392- (Aspergillus niger FDAARGOS_311)
ATGCAGATCGATCCGGCTGCTCTGAGTCGGACAGACTCGGCCTCCACTAC
AATAGCCTCGTCTAAAAGCACTGCTCCAAATGCTCCGCCAACGCAGAAGT
CTACCAAAGCCCTCATTTCCGTGCCGCGCCTGGATCTTGAGCCCATCTAC
ACCGAGCTGAAGGCCGCCATCGGCGACAATTGGGCTGACTACAAGGAAGC
TACTTCCCTCTTTCTTCTAGGTATGTCTGTGCATTGTCACGTCTATCCCC
ATCTTCTTGCGAGGACCTATCTATATCATTGTTCTTGAGTTTCTGTCTCT
TATCTTACAATAAGCCTCGGTCCCACTTTTAACCTGAATGCGTATGCTGA
CGCCGCCCTTCTCCCCCAACGAACAGGACAACTGAACCAAAGCGAATTGT
CGTCGCGAGTCGATCATATAATATGCGCCGATCAAAAAACCGAGCATCTA
CATAACAATTTCGTATGCGCAATCATTGGCAATCTTACACGGGATCTTCC
GGATCATGGTGTCGCAAGTTGGGTGTCGGCGAACGACAAGCCGTCCGTCG
TGTCAAAGCCGACATCGGGCGATGCCGCTGAACAAAGGCTCAAGACGGAG
GTTATGCAACTCCCTCCCCGGGATCGTCGACGAATCAAAGCTATTCCCGA
GGTATGCGACCTGCTCCAGAGATGCGACAGCCTCCCCCCTGAGATGTGCG
CGTACAAGGCTGACCATGGATCTATACAAAGCGTGACCCCCATGAACTGT
CGCCGAACGAACTGGAGGAGTATCATCTGGCGAAACAGATCAAGTTGCCA
AGTCAAGTACCAGCTAGTGCGGGCGGGTTGAATAAGACAAGTAGGTTCAT
GCCAGAGATCTCGTCTGTTTTTCGTCTGCTCGACCGAATGATGCTAATCA
TCCTGGATCTCGGTAGACTGGGAACTCGAAATTCGAAAACGATATGCACA
ACCTCTGGCGTCAGAGTCCGGCGAATTCCCGGACGCCGAATCTATCCACG
CACGTATGGTTCCCATCTGCTACGAAGAATCCATTGTCAGTGGTGCAAGC
CTTCCCTGTGCCGAGTTCATGGCGATCGCAACGGAGACTTTTGTCAAGGA
AGTTCTATCCGTAGTGTTCTCACGGACGAGATCGAACGGCCCTTCAGGGA
CAATAAACGGCATGATGATGCGCAAGTACCGACAGCAGCTCGAAAGTGAG
GAATTGGCTTTCACGCGAGGAGAGATCGTCAAGGATAGCGCGACCGGTCT
TCTCCCAGTCGAGGCCAAGGAGGCAAGCACCCGAAAACCCTTGGGCGTGC
GAGATCTCCGATTATCCTTGGAACTCGGCGGCGGTGTCCTGAGTCATATG
CCTCTACTCGTGGATCAAATCATGGGTGGGTATCTCGAGGATGAGTTAGA
AACAGACAAACAGGACCGGGTCGAGGAGGCGGTCGACGTCCCCGACGCGA
AGCCCGACAGTTTCATGGACGAAATGGACGTGGACGAGGCAAAATTCGAC
TGGGAAGGCGGGACAGTCACGGATCGGGAGCAATTGGGTGCCTTGCTGGA
TGAATGTTTGTCGATGGCCTCGTGA
back to top

Coding sequence (CDS) from alignment at NKJJ01000020.1:91818..93392-

>CAN33_50235-T1 ID=CAN33_50235-T1|Name=CAN33_50235-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=5052bp|location=Sequence derived from alignment at NKJJ01000020.1:91818..93392- (Aspergillus niger FDAARGOS_311)
ACTGGGAACTCGAAATTCGAAAACGATATGCACAACCTCTGGCGTCAGAG
TCCGGCGAATTCCCGGACGCCGAATCTATCCACGCACGTATGGTTCCCAT
CTGCTACGAAGAATCCATTGTCAGTGGTGCAAGCCTTCCCTGTGCCGAGT
TCATGGCGATCGCAACGGAGACTTTTGTCAAGGAAGTTCTATCCGTAGTG
TTCTCACGGACGAGATCGAACGGCCCTTCAGGGACAATAAACGGCATGAT
GATGCGCAAGTACCGACAGCAGCTCGAAAGTGAGGAATTGGCTTTCACGC
GAGGAGAGATCGTCAAGGATAGCGCGACCGGTCTTCTCCCAGTCGAGGCC
AAGGAGGCAAGCACCCGAAAACCCTTGGGCGTGCGAGATCTCCGATTATC
CTTGGAACTCGGCGGCGGTGTCCTGAGTCATATGCCTCTACTCGTGGATC
AAATCATGGGTGGGTATCTCGAGGATGAGTTAGAAACAGACAAACAGGAC
CGGGTCGAGGAGGCGGTCGACGTCCCCGACGCGAAGCCCGACAGTTTCAT
GGACGAAATGGACGTGGACGAGGCAAAATTCGACTGGGAAGGCGGGACAG
TCACGGATCGGGAGCAATTGGGTGCCTTGCTGGATGAATGTTTGTCGATG
GCCTCGTGACGTGACCCCCATGAACTGTCGCCGAACGAACTGGAGGAGTA
TCATCTGGCGAAACAGATCAAGTTGCCAAGTCAAGTACCAGCTAGTGCGG
GCGGGTTGAATAAGACAAGACAACTGAACCAAAGCGAATTGTCGTCGCGA
GTCGATCATATAATATGCGCCGATCAAAAAACCGAGCATCTACATAACAA
TTTCGTATGCGCAATCATTGGCAATCTTACACGGGATCTTCCGGATCATG
GTGTCGCAAGTTGGGTGTCGGCGAACGACAAGCCGTCCGTCGTGTCAAAG
CCGACATCGGGCGATGCCGCTGAACAAAGGCTCAAGACGGAGGTTATGCA
ACTCCCTCCCCGGGATCGTCGACGAATCAAAGCTATTCCCGAGATGCAGA
TCGATCCGGCTGCTCTGAGTCGGACAGACTCGGCCTCCACTACAATAGCC
TCGTCTAAAAGCACTGCTCCAAATGCTCCGCCAACGCAGAAGTCTACCAA
AGCCCTCATTTCCGTGCCGCGCCTGGATCTTGAGCCCATCTACACCGAGC
TGAAGGCCGCCATCGGCGACAATTGGGCTGACTACAAGGAAGCTACTTCC
CTCTTTCTTCTAGACTGGGAACTCGAAATTCGAAAACGATATGCACAACC
TCTGGCGTCAGAGTCCGGCGAATTCCCGGACGCCGAATCTATCCACGCAC
GTATGGTTCCCATCTGCTACGAAGAATCCATTGTCAGTGGTGCAAGCCTT
CCCTGTGCCGAGTTCATGGCGATCGCAACGGAGACTTTTGTCAAGGAAGT
TCTATCCGTAGTGTTCTCACGGACGAGATCGAACGGCCCTTCAGGGACAA
TAAACGGCATGATGATGCGCAAGTACCGACAGCAGCTCGAAAGTGAGGAA
TTGGCTTTCACGCGAGGAGAGATCGTCAAGGATAGCGCGACCGGTCTTCT
CCCAGTCGAGGCCAAGGAGGCAAGCACCCGAAAACCCTTGGGCGTGCGAG
ATCTCCGATTATCCTTGGAACTCGGCGGCGGTGTCCTGAGTCATATGCCT
CTACTCGTGGATCAAATCATGGGTGGGTATCTCGAGGATGAGTTAGAAAC
AGACAAACAGGACCGGGTCGAGGAGGCGGTCGACGTCCCCGACGCGAAGC
CCGACAGTTTCATGGACGAAATGGACGTGGACGAGGCAAAATTCGACTGG
GAAGGCGGGACAGTCACGGATCGGGAGCAATTGGGTGCCTTGCTGGATGA
ATGTTTGTCGATGGCCTCGTGACGTGACCCCCATGAACTGTCGCCGAACG
AACTGGAGGAGTATCATCTGGCGAAACAGATCAAGTTGCCAAGTCAAGTA
CCAGCTAGTGCGGGCGGGTTGAATAAGACAAGACAACTGAACCAAAGCGA
ATTGTCGTCGCGAGTCGATCATATAATATGCGCCGATCAAAAAACCGAGC
ATCTACATAACAATTTCGTATGCGCAATCATTGGCAATCTTACACGGGAT
CTTCCGGATCATGGTGTCGCAAGTTGGGTGTCGGCGAACGACAAGCCGTC
CGTCGTGTCAAAGCCGACATCGGGCGATGCCGCTGAACAAAGGCTCAAGA
CGGAGGTTATGCAACTCCCTCCCCGGGATCGTCGACGAATCAAAGCTATT
CCCGAGATGCAGATCGATCCGGCTGCTCTGAGTCGGACAGACTCGGCCTC
CACTACAATAGCCTCGTCTAAAAGCACTGCTCCAAATGCTCCGCCAACGC
AGAAGTCTACCAAAGCCCTCATTTCCGTGCCGCGCCTGGATCTTGAGCCC
ATCTACACCGAGCTGAAGGCCGCCATCGGCGACAATTGGGCTGACTACAA
GGAAGCTACTTCCCTCTTTCTTCTAGACTGGGAACTCGAAATTCGAAAAC
GATATGCACAACCTCTGGCGTCAGAGTCCGGCGAATTCCCGGACGCCGAA
TCTATCCACGCACGTATGGTTCCCATCTGCTACGAAGAATCCATTGTCAG
TGGTGCAAGCCTTCCCTGTGCCGAGTTCATGGCGATCGCAACGGAGACTT
TTGTCAAGGAAGTTCTATCCGTAGTGTTCTCACGGACGAGATCGAACGGC
CCTTCAGGGACAATAAACGGCATGATGATGCGCAAGTACCGACAGCAGCT
CGAAAGTGAGGAATTGGCTTTCACGCGAGGAGAGATCGTCAAGGATAGCG
CGACCGGTCTTCTCCCAGTCGAGGCCAAGGAGGCAAGCACCCGAAAACCC
TTGGGCGTGCGAGATCTCCGATTATCCTTGGAACTCGGCGGCGGTGTCCT
GAGTCATATGCCTCTACTCGTGGATCAAATCATGGGTGGGTATCTCGAGG
ATGAGTTAGAAACAGACAAACAGGACCGGGTCGAGGAGGCGGTCGACGTC
CCCGACGCGAAGCCCGACAGTTTCATGGACGAAATGGACGTGGACGAGGC
AAAATTCGACTGGGAAGGCGGGACAGTCACGGATCGGGAGCAATTGGGTG
CCTTGCTGGATGAATGTTTGTCGATGGCCTCGTGACGTGACCCCCATGAA
CTGTCGCCGAACGAACTGGAGGAGTATCATCTGGCGAAACAGATCAAGTT
GCCAAGTCAAGTACCAGCTAGTGCGGGCGGGTTGAATAAGACAAGACAAC
TGAACCAAAGCGAATTGTCGTCGCGAGTCGATCATATAATATGCGCCGAT
CAAAAAACCGAGCATCTACATAACAATTTCGTATGCGCAATCATTGGCAA
TCTTACACGGGATCTTCCGGATCATGGTGTCGCAAGTTGGGTGTCGGCGA
ACGACAAGCCGTCCGTCGTGTCAAAGCCGACATCGGGCGATGCCGCTGAA
CAAAGGCTCAAGACGGAGGTTATGCAACTCCCTCCCCGGGATCGTCGACG
AATCAAAGCTATTCCCGAGATGCAGATCGATCCGGCTGCTCTGAGTCGGA
CAGACTCGGCCTCCACTACAATAGCCTCGTCTAAAAGCACTGCTCCAAAT
GCTCCGCCAACGCAGAAGTCTACCAAAGCCCTCATTTCCGTGCCGCGCCT
GGATCTTGAGCCCATCTACACCGAGCTGAAGGCCGCCATCGGCGACAATT
GGGCTGACTACAAGGAAGCTACTTCCCTCTTTCTTCTAGACTGGGAACTC
GAAATTCGAAAACGATATGCACAACCTCTGGCGTCAGAGTCCGGCGAATT
CCCGGACGCCGAATCTATCCACGCACGTATGGTTCCCATCTGCTACGAAG
AATCCATTGTCAGTGGTGCAAGCCTTCCCTGTGCCGAGTTCATGGCGATC
GCAACGGAGACTTTTGTCAAGGAAGTTCTATCCGTAGTGTTCTCACGGAC
GAGATCGAACGGCCCTTCAGGGACAATAAACGGCATGATGATGCGCAAGT
ACCGACAGCAGCTCGAAAGTGAGGAATTGGCTTTCACGCGAGGAGAGATC
GTCAAGGATAGCGCGACCGGTCTTCTCCCAGTCGAGGCCAAGGAGGCAAG
CACCCGAAAACCCTTGGGCGTGCGAGATCTCCGATTATCCTTGGAACTCG
GCGGCGGTGTCCTGAGTCATATGCCTCTACTCGTGGATCAAATCATGGGT
GGGTATCTCGAGGATGAGTTAGAAACAGACAAACAGGACCGGGTCGAGGA
GGCGGTCGACGTCCCCGACGCGAAGCCCGACAGTTTCATGGACGAAATGG
ACGTGGACGAGGCAAAATTCGACTGGGAAGGCGGGACAGTCACGGATCGG
GAGCAATTGGGTGCCTTGCTGGATGAATGTTTGTCGATGGCCTCGTGACG
TGACCCCCATGAACTGTCGCCGAACGAACTGGAGGAGTATCATCTGGCGA
AACAGATCAAGTTGCCAAGTCAAGTACCAGCTAGTGCGGGCGGGTTGAAT
AAGACAAGACAACTGAACCAAAGCGAATTGTCGTCGCGAGTCGATCATAT
AATATGCGCCGATCAAAAAACCGAGCATCTACATAACAATTTCGTATGCG
CAATCATTGGCAATCTTACACGGGATCTTCCGGATCATGGTGTCGCAAGT
TGGGTGTCGGCGAACGACAAGCCGTCCGTCGTGTCAAAGCCGACATCGGG
CGATGCCGCTGAACAAAGGCTCAAGACGGAGGTTATGCAACTCCCTCCCC
GGGATCGTCGACGAATCAAAGCTATTCCCGAGATGCAGATCGATCCGGCT
GCTCTGAGTCGGACAGACTCGGCCTCCACTACAATAGCCTCGTCTAAAAG
CACTGCTCCAAATGCTCCGCCAACGCAGAAGTCTACCAAAGCCCTCATTT
CCGTGCCGCGCCTGGATCTTGAGCCCATCTACACCGAGCTGAAGGCCGCC
ATCGGCGACAATTGGGCTGACTACAAGGAAGCTACTTCCCTCTTTCTTCT
AG
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0070461SAGA-type complex
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_50235CAN33_50235Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_50235-T1CAN33_50235-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_50235-T1.cdsCAN33_50235-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_50235-T1.exon4CAN33_50235-T1.exon4Aspergillus niger FDAARGOS_311exon
CAN33_50235-T1.exon3CAN33_50235-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_50235-T1.exon2CAN33_50235-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_50235-T1.exon1CAN33_50235-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
DBxrefInterPro:IPR024738
DBxrefPFAM:PF12767
ProductTranscriptional regulator of RNA polII SAGA subunit family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000020.1supercontigNKJJ01000020.1:91818..93392 -
Powered by Drupal