You are here

Home

CAN33_50250-T1, CAN33_50250-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_50250-T1
Unique NameCAN33_50250-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000020.1:100743..101542-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_50250-T1 ID=CAN33_50250-T1|Name=CAN33_50250-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=800bp|location=Sequence derived from alignment at NKJJ01000020.1:100743..101542- (Aspergillus niger FDAARGOS_311)
ATGGCTCTTCATCTCTTTTCGTGGTCGCCTTTGCGCACCGTTGGCTCAGC
CTTTGGGTCGGTGTCTGCTGCTGCTAGTGTTGCTTGTCGCTGGAATTCGA
CGGCTGCTCCGAATCCCGCTCCTCAGCGTGGCCCCAGATCTCGGTGTAAG
TGATTGTACTATTCAGTCTGACTTTCTACCCGTTTCATAGACCGAACTTG
GGGGGAACCTATTTCAATTATATCCCTTCTATTGACTTTTCGCTAATCGG
TGGCTTCAACGCAGCTCCCAAAGTGTACAACCGCCGCCGTGGACCAGTGG
ACCGCCGCCGATTTCTCGAGGAGCAGCGGGCTCAGAGTGAGAGCAGGGCT
TTGGAGAGGTTCCAGACGCGTGAATGGAAAGCCGGTGATCTCTATGCCCC
TCATGATCTCAGCCCGGCAGAGATGAAGAAATGGAGGAAGCGTTACAGTC
CCTCGACTGATGCCTTTGACGCCCTGAACCTGAACCCCCTGGATTTGTAT
AAGGTAAGCCAACGTATCATGGACTTTTGGGAAAGAAAGAAGATGGTTCT
GTCTCGCAATCCATGCTGATCGCTGATAATTCGTGCTTCGCAGAACTTCT
CTGTTATGTCGGAATATATCACCTCGATGGGTCGGATAAAGCACAGAAAC
ATGACGGGTCTGCGGCCCGTCAACCAGCGCAAGATTTCCAAGGCTATCCG
GAGAGCTGTTGGTCTCGGTCTCATGCCCAGTGTTCACCGACACCCGGAAG
TTCTGGCGGCCGAAGCAAGGTCGCGGATGGAGGGAGGAAGTGGCTACTGA
back to top

Coding sequence (CDS) from alignment at NKJJ01000020.1:100743..101542-

>CAN33_50250-T1 ID=CAN33_50250-T1|Name=CAN33_50250-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1773bp|location=Sequence derived from alignment at NKJJ01000020.1:100743..101542- (Aspergillus niger FDAARGOS_311)
AACTTCTCTGTTATGTCGGAATATATCACCTCGATGGGTCGGATAAAGCA
CAGAAACATGACGGGTCTGCGGCCCGTCAACCAGCGCAAGATTTCCAAGG
CTATCCGGAGAGCTGTTGGTCTCGGTCTCATGCCCAGTGTTCACCGACAC
CCGGAAGTTCTGGCGGCCGAAGCAAGGTCGCGGATGGAGGGAGGAAGTGG
CTACTGACTCCCAAAGTGTACAACCGCCGCCGTGGACCAGTGGACCGCCG
CCGATTTCTCGAGGAGCAGCGGGCTCAGAGTGAGAGCAGGGCTTTGGAGA
GGTTCCAGACGCGTGAATGGAAAGCCGGTGATCTCTATGCCCCTCATGAT
CTCAGCCCGGCAGAGATGAAGAAATGGAGGAAGCGTTACAGTCCCTCGAC
TGATGCCTTTGACGCCCTGAACCTGAACCCCCTGGATTTGTATAAGATGG
CTCTTCATCTCTTTTCGTGGTCGCCTTTGCGCACCGTTGGCTCAGCCTTT
GGGTCGGTGTCTGCTGCTGCTAGTGTTGCTTGTCGCTGGAATTCGACGGC
TGCTCCGAATCCCGCTCCTCAGCGTGGCCCCAGATCTCGGTAACTTCTCT
GTTATGTCGGAATATATCACCTCGATGGGTCGGATAAAGCACAGAAACAT
GACGGGTCTGCGGCCCGTCAACCAGCGCAAGATTTCCAAGGCTATCCGGA
GAGCTGTTGGTCTCGGTCTCATGCCCAGTGTTCACCGACACCCGGAAGTT
CTGGCGGCCGAAGCAAGGTCGCGGATGGAGGGAGGAAGTGGCTACTGACT
CCCAAAGTGTACAACCGCCGCCGTGGACCAGTGGACCGCCGCCGATTTCT
CGAGGAGCAGCGGGCTCAGAGTGAGAGCAGGGCTTTGGAGAGGTTCCAGA
CGCGTGAATGGAAAGCCGGTGATCTCTATGCCCCTCATGATCTCAGCCCG
GCAGAGATGAAGAAATGGAGGAAGCGTTACAGTCCCTCGACTGATGCCTT
TGACGCCCTGAACCTGAACCCCCTGGATTTGTATAAGATGGCTCTTCATC
TCTTTTCGTGGTCGCCTTTGCGCACCGTTGGCTCAGCCTTTGGGTCGGTG
TCTGCTGCTGCTAGTGTTGCTTGTCGCTGGAATTCGACGGCTGCTCCGAA
TCCCGCTCCTCAGCGTGGCCCCAGATCTCGGTAACTTCTCTGTTATGTCG
GAATATATCACCTCGATGGGTCGGATAAAGCACAGAAACATGACGGGTCT
GCGGCCCGTCAACCAGCGCAAGATTTCCAAGGCTATCCGGAGAGCTGTTG
GTCTCGGTCTCATGCCCAGTGTTCACCGACACCCGGAAGTTCTGGCGGCC
GAAGCAAGGTCGCGGATGGAGGGAGGAAGTGGCTACTGACTCCCAAAGTG
TACAACCGCCGCCGTGGACCAGTGGACCGCCGCCGATTTCTCGAGGAGCA
GCGGGCTCAGAGTGAGAGCAGGGCTTTGGAGAGGTTCCAGACGCGTGAAT
GGAAAGCCGGTGATCTCTATGCCCCTCATGATCTCAGCCCGGCAGAGATG
AAGAAATGGAGGAAGCGTTACAGTCCCTCGACTGATGCCTTTGACGCCCT
GAACCTGAACCCCCTGGATTTGTATAAGATGGCTCTTCATCTCTTTTCGT
GGTCGCCTTTGCGCACCGTTGGCTCAGCCTTTGGGTCGGTGTCTGCTGCT
GCTAGTGTTGCTTGTCGCTGGAATTCGACGGCTGCTCCGAATCCCGCTCC
TCAGCGTGGCCCCAGATCTCGGT
back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_50250CAN33_50250Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_50250-T1CAN33_50250-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_50250-T1.cdsCAN33_50250-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_50250-T1.exon3CAN33_50250-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_50250-T1.exon2CAN33_50250-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_50250-T1.exon1CAN33_50250-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
NoteEggNog:ENOG41
NoteBUSCO:EOG09264XLN
DBxrefInterPro:IPR001648
DBxrefInterPro:IPR036870
DBxrefPFAM:PF01084
ProductRibosomal protein S18 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000020.1supercontigNKJJ01000020.1:100743..101542 -
Powered by Drupal