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CAN33_50355-T1, CAN33_50355-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_50355-T1
Unique NameCAN33_50355-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000020.1:163699..164472-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_50355-T1 ID=CAN33_50355-T1|Name=CAN33_50355-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=774bp|location=Sequence derived from alignment at NKJJ01000020.1:163699..164472- (Aspergillus niger FDAARGOS_311)
ATGAGCCGGAAGCTCGCCCCCGAAGCCAATCGGTAAGTTCTGCTCGCCGA
ATCTTGCCCCTCTTCGGTCGCCCGCCATCTTTCAATTCCAGGCATTTGTT
CGGCACGTTGTTGGCTGGCAAACCTACGAGCCGGGCAAGTATCATATCTA
AAGCATCGATGCTGACCGGTTTCAGGATTCTCTTTGTAAAGAACCTCAAG
TACGTCGATGATTTCCCAAGATTCGTTCCTCGACTCGCAAACCATCCGTC
GCATACCTGTCGACCAACAGCCAGCAGGCGACAGGCGCCCATCGTCTTCC
AAAATGCAAGAGCTAACCTGATTGTTTCCTTACAGCTACAACGTCACAGC
TGAGCAACTCTTTGACCTCTTCGGCAAATTTGGTCCCATCCGGTAAATCT
GCGCATGACTCACGTTCAGCCCACTTCTTGGTCAATAATGGCTAATTGTT
CCTGTTTCTTCCAGCCAAATACGTCAGGGAATCGCCAACAACTCGAAGGG
CACAGCCTTTGTGGTTTACGAAGACGTTCATGACGCCAAACAGGCATGCG
ATAAGCTCAATGGATTCAACTTCCAGAACAGATACCTCGTCGGTATGTAA
CCCCGTGTCAAGGGGAGATGAAGCAGAGAATATATGGAGACAAGCCGATT
GGCTGACATTTGTTTCTTTCTAGTTCTATATCACCAGCCTGAGAAAATGC
TTAGGTCGAAAGAGGACTTGGCGGAAAGGCAAGAGAATTTGGAGCGTCTC
AAACAGCAACATGGGATAGAATGA
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Coding sequence (CDS) from alignment at NKJJ01000020.1:163699..164472-

>CAN33_50355-T1 ID=CAN33_50355-T1|Name=CAN33_50355-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1710bp|location=Sequence derived from alignment at NKJJ01000020.1:163699..164472- (Aspergillus niger FDAARGOS_311)
TTCTATATCACCAGCCTGAGAAAATGCTTAGGTCGAAAGAGGACTTGGCG
GAAAGGCAAGAGAATTTGGAGCGTCTCAAACAGCAACATGGGATAGAATG
ACCAAATACGTCAGGGAATCGCCAACAACTCGAAGGGCACAGCCTTTGTG
GTTTACGAAGACGTTCATGACGCCAAACAGGCATGCGATAAGCTCAATGG
ATTCAACTTCCAGAACAGATACCTCGTCGCTACAACGTCACAGCTGAGCA
ACTCTTTGACCTCTTCGGCAAATTTGGTCCCATCCGGATTCTCTTTGTAA
AGAACCTCAAATGAGCCGGAAGCTCGCCCCCGAAGCCAATCGTTCTATAT
CACCAGCCTGAGAAAATGCTTAGGTCGAAAGAGGACTTGGCGGAAAGGCA
AGAGAATTTGGAGCGTCTCAAACAGCAACATGGGATAGAATGACCAAATA
CGTCAGGGAATCGCCAACAACTCGAAGGGCACAGCCTTTGTGGTTTACGA
AGACGTTCATGACGCCAAACAGGCATGCGATAAGCTCAATGGATTCAACT
TCCAGAACAGATACCTCGTCGCTACAACGTCACAGCTGAGCAACTCTTTG
ACCTCTTCGGCAAATTTGGTCCCATCCGGATTCTCTTTGTAAAGAACCTC
AAATGAGCCGGAAGCTCGCCCCCGAAGCCAATCGTTCTATATCACCAGCC
TGAGAAAATGCTTAGGTCGAAAGAGGACTTGGCGGAAAGGCAAGAGAATT
TGGAGCGTCTCAAACAGCAACATGGGATAGAATGACCAAATACGTCAGGG
AATCGCCAACAACTCGAAGGGCACAGCCTTTGTGGTTTACGAAGACGTTC
ATGACGCCAAACAGGCATGCGATAAGCTCAATGGATTCAACTTCCAGAAC
AGATACCTCGTCGCTACAACGTCACAGCTGAGCAACTCTTTGACCTCTTC
GGCAAATTTGGTCCCATCCGGATTCTCTTTGTAAAGAACCTCAAATGAGC
CGGAAGCTCGCCCCCGAAGCCAATCGTTCTATATCACCAGCCTGAGAAAA
TGCTTAGGTCGAAAGAGGACTTGGCGGAAAGGCAAGAGAATTTGGAGCGT
CTCAAACAGCAACATGGGATAGAATGACCAAATACGTCAGGGAATCGCCA
ACAACTCGAAGGGCACAGCCTTTGTGGTTTACGAAGACGTTCATGACGCC
AAACAGGCATGCGATAAGCTCAATGGATTCAACTTCCAGAACAGATACCT
CGTCGCTACAACGTCACAGCTGAGCAACTCTTTGACCTCTTCGGCAAATT
TGGTCCCATCCGGATTCTCTTTGTAAAGAACCTCAAATGAGCCGGAAGCT
CGCCCCCGAAGCCAATCGTTCTATATCACCAGCCTGAGAAAATGCTTAGG
TCGAAAGAGGACTTGGCGGAAAGGCAAGAGAATTTGGAGCGTCTCAAACA
GCAACATGGGATAGAATGACCAAATACGTCAGGGAATCGCCAACAACTCG
AAGGGCACAGCCTTTGTGGTTTACGAAGACGTTCATGACGCCAAACAGGC
ATGCGATAAGCTCAATGGATTCAACTTCCAGAACAGATACCTCGTCGCTA
CAACGTCACAGCTGAGCAACTCTTTGACCTCTTCGGCAAATTTGGTCCCA
TCCGGATTCTCTTTGTAAAGAACCTCAAATGAGCCGGAAGCTCGCCCCCG
AAGCCAATCG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_50355CAN33_50355Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_50355-T1CAN33_50355-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_50355-T1.cdsCAN33_50355-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_50355-T1.exon5CAN33_50355-T1.exon5Aspergillus niger FDAARGOS_311exon
CAN33_50355-T1.exon4CAN33_50355-T1.exon4Aspergillus niger FDAARGOS_311exon
CAN33_50355-T1.exon3CAN33_50355-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_50355-T1.exon2CAN33_50355-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_50355-T1.exon1CAN33_50355-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
DBxrefInterPro:IPR035979
DBxrefInterPro:IPR034150
DBxrefInterPro:IPR012677
DBxrefInterPro:IPR000504
DBxrefPFAM:PF13893
DBxrefPFAM:PF00076
ProductRNA recognition motif family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000020.1supercontigNKJJ01000020.1:163699..164472 -
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