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CAN33_50510-T1, CAN33_50510-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_50510-T1
Unique NameCAN33_50510-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000020.1:274243..274879-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_50510-T1 ID=CAN33_50510-T1|Name=CAN33_50510-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=637bp|location=Sequence derived from alignment at NKJJ01000020.1:274243..274879- (Aspergillus niger FDAARGOS_311)
ATGTTCGCCATCCAACCAGCCCAGAACTCGTCCAACGAGACACCAACTGA
TAAATTCACTCCGAACATCCTGCCCTGTCGCATCCACCACGATGGCCCCG
TTGAAACTCTAGGCCGCTACTGGAATCCCACCTCTGATGAGAAAGGTATA
CACTGACTGCTTCGCATCCGGCAATTCGCTACCCACGCTCATTTTTCACA
GATCAGAACCTGCAAACAGCCTACTTCCGCGGCCGCAAGCTAAGGGGCCG
CCGAGTCGCGATTCCCGAAGGCTACGAGGGTGAGACTTGCCCGGCCACAT
CAATCCTTGAATGGTTCGCTAACAAATCGATTTAGGTGTCATTGCAATCC
CCACAGACCGTACGATGCCTACTACCCGTACAAGCGCCGACGTTGAGGTC
GAGGAAATCACACCAGAAGAACCTGTGAAGGTCCTTGAGAAGCAAGGCAC
ATTTGATGAATATGTTGTCTGGGGACATGAGTTTGTGCCTGCGGCAGATG
AGACCTTCGTTAAGGGAGTGGAGGAGTGGATCAAGCTTGCTGAAGTGGTA
GGTCGATCATTTTCCATAGGTCGTCCTCAGGCTAATGCAGTGTAGATGCA
TACGACTCCTGACAGTGAAAAGCAGCCGTCTACTTGA
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Coding sequence (CDS) from alignment at NKJJ01000020.1:274243..274879-

>CAN33_50510-T1 ID=CAN33_50510-T1|Name=CAN33_50510-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1908bp|location=Sequence derived from alignment at NKJJ01000020.1:274243..274879- (Aspergillus niger FDAARGOS_311)
ATGCATACGACTCCTGACAGTGAAAAGCAGCCGTCTACTTGAGTGTCATT
GCAATCCCCACAGACCGTACGATGCCTACTACCCGTACAAGCGCCGACGT
TGAGGTCGAGGAAATCACACCAGAAGAACCTGTGAAGGTCCTTGAGAAGC
AAGGCACATTTGATGAATATGTTGTCTGGGGACATGAGTTTGTGCCTGCG
GCAGATGAGACCTTCGTTAAGGGAGTGGAGGAGTGGATCAAGCTTGCTGA
AGTGATCAGAACCTGCAAACAGCCTACTTCCGCGGCCGCAAGCTAAGGGG
CCGCCGAGTCGCGATTCCCGAAGGCTACGAGGATGTTCGCCATCCAACCA
GCCCAGAACTCGTCCAACGAGACACCAACTGATAAATTCACTCCGAACAT
CCTGCCCTGTCGCATCCACCACGATGGCCCCGTTGAAACTCTAGGCCGCT
ACTGGAATCCCACCTCTGATGAGAAAGATGCATACGACTCCTGACAGTGA
AAAGCAGCCGTCTACTTGAGTGTCATTGCAATCCCCACAGACCGTACGAT
GCCTACTACCCGTACAAGCGCCGACGTTGAGGTCGAGGAAATCACACCAG
AAGAACCTGTGAAGGTCCTTGAGAAGCAAGGCACATTTGATGAATATGTT
GTCTGGGGACATGAGTTTGTGCCTGCGGCAGATGAGACCTTCGTTAAGGG
AGTGGAGGAGTGGATCAAGCTTGCTGAAGTGATCAGAACCTGCAAACAGC
CTACTTCCGCGGCCGCAAGCTAAGGGGCCGCCGAGTCGCGATTCCCGAAG
GCTACGAGGATGTTCGCCATCCAACCAGCCCAGAACTCGTCCAACGAGAC
ACCAACTGATAAATTCACTCCGAACATCCTGCCCTGTCGCATCCACCACG
ATGGCCCCGTTGAAACTCTAGGCCGCTACTGGAATCCCACCTCTGATGAG
AAAGATGCATACGACTCCTGACAGTGAAAAGCAGCCGTCTACTTGAGTGT
CATTGCAATCCCCACAGACCGTACGATGCCTACTACCCGTACAAGCGCCG
ACGTTGAGGTCGAGGAAATCACACCAGAAGAACCTGTGAAGGTCCTTGAG
AAGCAAGGCACATTTGATGAATATGTTGTCTGGGGACATGAGTTTGTGCC
TGCGGCAGATGAGACCTTCGTTAAGGGAGTGGAGGAGTGGATCAAGCTTG
CTGAAGTGATCAGAACCTGCAAACAGCCTACTTCCGCGGCCGCAAGCTAA
GGGGCCGCCGAGTCGCGATTCCCGAAGGCTACGAGGATGTTCGCCATCCA
ACCAGCCCAGAACTCGTCCAACGAGACACCAACTGATAAATTCACTCCGA
ACATCCTGCCCTGTCGCATCCACCACGATGGCCCCGTTGAAACTCTAGGC
CGCTACTGGAATCCCACCTCTGATGAGAAAGATGCATACGACTCCTGACA
GTGAAAAGCAGCCGTCTACTTGAGTGTCATTGCAATCCCCACAGACCGTA
CGATGCCTACTACCCGTACAAGCGCCGACGTTGAGGTCGAGGAAATCACA
CCAGAAGAACCTGTGAAGGTCCTTGAGAAGCAAGGCACATTTGATGAATA
TGTTGTCTGGGGACATGAGTTTGTGCCTGCGGCAGATGAGACCTTCGTTA
AGGGAGTGGAGGAGTGGATCAAGCTTGCTGAAGTGATCAGAACCTGCAAA
CAGCCTACTTCCGCGGCCGCAAGCTAAGGGGCCGCCGAGTCGCGATTCCC
GAAGGCTACGAGGATGTTCGCCATCCAACCAGCCCAGAACTCGTCCAACG
AGACACCAACTGATAAATTCACTCCGAACATCCTGCCCTGTCGCATCCAC
CACGATGGCCCCGTTGAAACTCTAGGCCGCTACTGGAATCCCACCTCTGA
TGAGAAAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0032299ribonuclease H2 complex
Vocabulary: Biological Process
TermDefinition
GO:0006401RNA catabolic process
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_50510CAN33_50510Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_50510-T1CAN33_50510-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_50510-T1.cdsCAN33_50510-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_50510-T1.exon4CAN33_50510-T1.exon4Aspergillus niger FDAARGOS_311exon
CAN33_50510-T1.exon3CAN33_50510-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_50510-T1.exon2CAN33_50510-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_50510-T1.exon1CAN33_50510-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
DBxrefInterPro:IPR013924
DBxrefPFAM:PF08615
ProductRibonuclease H2 non-catalytic subunit (Ylr154p-like) family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000020.1supercontigNKJJ01000020.1:274243..274879 -
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