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CAN33_51100-T1, CAN33_51100-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_51100-T1
Unique NameCAN33_51100-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000020.1:619236..620558+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_51100-T1 ID=CAN33_51100-T1|Name=CAN33_51100-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1323bp|location=Sequence derived from alignment at NKJJ01000020.1:619236..620558+ (Aspergillus niger FDAARGOS_311)
ATGTCTGTCTTCAAGGCATCATTCCTATTTCTTCTTTCCTCCTCACTAGT
CCACGGGGTTCCACACTCCAGCAGAGCATCTCGGAGCCAACAATGCGTGG
TTCCGTCCAAATACCAGGCATCGAATGGGACGGCTGATGACTCGGCTGCT
GTCTCCCAGGCCTTTGCACAATGCGCGACTGACTCGGTTATTATTTTCGA
GGAGGGTGTCAACTATAACATCTTTCAGCCGATCACCGCCACCAACCTCA
GCAATGTGGAAATCCGGATGCACGGCAACCTGCATCTGCCACAGAATATC
ACTGCGGTGCAGAATATAGTCAGTGACGGTACTTCTACATGGTTTACCCT
AGAAGGACCAAAAGTGGACTGGATTGGTCCTGAAGACGTGAACAATGGTT
GGATTGACTCGTACGGACAACCGTGGTGGGATGCGAACCCTGCAGGTAGT
TCAGGCATCGATAACCGTCCGCATCTCATGAGCTTCAAGTCTAGCCAAGC
CACTATGAAATACTTCAGGTCTAGGAAGCCCATCGCCTGGAATGTCAAAC
TGCATGGACAAGACATTACAGTCAGCCACGCTATTATCGACGCTACCTCG
ACAGGTAGCTTCCCATTCAACACTGACGGTTTCGATGTTGAGGGTACCAA
TATCCAGATCACCGACAGTATCATGTACAACGGCGACGATGCGATTGCAG
TAGGCGCGGACTCGCACGACATACTTTTCACAAGAAACACCATCGGCTAC
CAGACTCACGGCATGAGCATTGGATCGCTGGGAAAGGATCCCACAGACTT
CGCCAATATCAGCAACATCCGCTTTGACGATGTGACTGTTGTCGATGGGC
TCTACGCAGCACGCTTCAAGTCATGGAGCGGAGGGACCGGACTCGTCAAG
AATGTGACCTGGAACAATATTAGAGTCTTCAACGTGACGTTCCCGATCTT
TGTGACTCAGAGTTATAGCGACCAAGGCGCCTCCCGGTCTGGAACTGTCA
ATGCTAGTTCGGCTGTGATGATGGAGGATTTTACCTGGTCTGACTTTGCT
GGCTCGATCAATACGTACCAGCCTGGTGACGGTTCTTGCGTTTCCGACCC
TTGCTGGTACAACGTTGGGCTGCCAAATTTGAAGCATACGGAGGCCCTCA
TTATCGAATGCCATACTGCTCAATCTTGTAAGAACTTTGTGACGGACAAC
ATCCAGCTATACCCGCAGGTTCTGGAACCAGCGAGTGTGATCTGCATGAA
CGCAACGGCAGCCCTCAATCCTGATCTTGGATTTACATGTAAAAACGGGA
CCTACAGCCCATTATCTAATTAA
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Coding sequence (CDS) from alignment at NKJJ01000020.1:619236..620558+

>CAN33_51100-T1 ID=CAN33_51100-T1|Name=CAN33_51100-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1323bp|location=Sequence derived from alignment at NKJJ01000020.1:619236..620558+ (Aspergillus niger FDAARGOS_311)
ATGTCTGTCTTCAAGGCATCATTCCTATTTCTTCTTTCCTCCTCACTAGT
CCACGGGGTTCCACACTCCAGCAGAGCATCTCGGAGCCAACAATGCGTGG
TTCCGTCCAAATACCAGGCATCGAATGGGACGGCTGATGACTCGGCTGCT
GTCTCCCAGGCCTTTGCACAATGCGCGACTGACTCGGTTATTATTTTCGA
GGAGGGTGTCAACTATAACATCTTTCAGCCGATCACCGCCACCAACCTCA
GCAATGTGGAAATCCGGATGCACGGCAACCTGCATCTGCCACAGAATATC
ACTGCGGTGCAGAATATAGTCAGTGACGGTACTTCTACATGGTTTACCCT
AGAAGGACCAAAAGTGGACTGGATTGGTCCTGAAGACGTGAACAATGGTT
GGATTGACTCGTACGGACAACCGTGGTGGGATGCGAACCCTGCAGGTAGT
TCAGGCATCGATAACCGTCCGCATCTCATGAGCTTCAAGTCTAGCCAAGC
CACTATGAAATACTTCAGGTCTAGGAAGCCCATCGCCTGGAATGTCAAAC
TGCATGGACAAGACATTACAGTCAGCCACGCTATTATCGACGCTACCTCG
ACAGGTAGCTTCCCATTCAACACTGACGGTTTCGATGTTGAGGGTACCAA
TATCCAGATCACCGACAGTATCATGTACAACGGCGACGATGCGATTGCAG
TAGGCGCGGACTCGCACGACATACTTTTCACAAGAAACACCATCGGCTAC
CAGACTCACGGCATGAGCATTGGATCGCTGGGAAAGGATCCCACAGACTT
CGCCAATATCAGCAACATCCGCTTTGACGATGTGACTGTTGTCGATGGGC
TCTACGCAGCACGCTTCAAGTCATGGAGCGGAGGGACCGGACTCGTCAAG
AATGTGACCTGGAACAATATTAGAGTCTTCAACGTGACGTTCCCGATCTT
TGTGACTCAGAGTTATAGCGACCAAGGCGCCTCCCGGTCTGGAACTGTCA
ATGCTAGTTCGGCTGTGATGATGGAGGATTTTACCTGGTCTGACTTTGCT
GGCTCGATCAATACGTACCAGCCTGGTGACGGTTCTTGCGTTTCCGACCC
TTGCTGGTACAACGTTGGGCTGCCAAATTTGAAGCATACGGAGGCCCTCA
TTATCGAATGCCATACTGCTCAATCTTGTAAGAACTTTGTGACGGACAAC
ATCCAGCTATACCCGCAGGTTCTGGAACCAGCGAGTGTGATCTGCATGAA
CGCAACGGCAGCCCTCAATCCTGATCTTGGATTTACATGTAAAAACGGGA
CCTACAGCCCATTATCTAATTAA
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
TermDefinition
GO:0005975carbohydrate metabolic process
Vocabulary: Molecular Function
TermDefinition
GO:0004650polygalacturonase activity
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_51100CAN33_51100Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_51100-T1.exon1CAN33_51100-T1.exon1Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_51100-T1.cdsCAN33_51100-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_51100-T1CAN33_51100-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
NoteSECRETED:SignalP(1-19)
NoteCAZy:GH28
DBxrefInterPro:IPR011050
DBxrefInterPro:IPR000743
DBxrefInterPro:IPR012334
DBxrefPFAM:PF00295
ProductGlycosyl hydrolases family 28 family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000020.1supercontigNKJJ01000020.1:619236..620558 +
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