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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000020.1:647038..648012- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_51160-T1 ID=CAN33_51160-T1|Name=CAN33_51160-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=975bp|location=Sequence derived from alignment at NKJJ01000020.1:647038..648012- (Aspergillus niger FDAARGOS_311)
ATGGATACCAACGGCGAAGTGACGGAGGCTGCTCCGGTTGTTGAGAAGCC
GGTTGCTGAGACTGAGGGTATATACCTTTCTCCCCTCTCGACTTGTGGAT
ATCAAATTTGATATTGACCTCTACGCATCACCTACAGACAAGGCCGTCGA
CGAAGTTACCGAACTCTTCAAGGGTCTTTCGAAAAAGAAGAAGAGCAAGA
AGCCCAAGGACACCGAGGGCGATGACGAGACCCCCGCCGCCGACGGCGAG
TTCGACCCCTCCGCTCTGAAGAAGAAGAAGAAGAAGCCGAAGAAGGTCGA
CGCGGGCGATTTCGAGGCCAAGCTGGCTGAGGCCGGTGTTGCAGAGAAGG
AAGGTGCCGTCGCCGAGGAGAAGGAAGAGGTCGTCCCCGAGGGAGACCAC
GAAGCTGGAACCGGTATCTGGGCTCACGACGCCGCGCAACCCATCCCGTA
CTCGCTGCTTGTGTCCCGATTCTTCTCCCTCATTCAGAGCCACCACCCCG
ATCTGTTGTCCAGCGGTACCAAGTCGTATAAGATCCCGCCGCCCCAGTGT
CTGCGTGAAGGTAACCGTCGTACGATTTTCGCCAACATTGCCGATATCTG
CAAGCGCATGAAGCGGTCCGATGATCACGTTATGCAGTTCTTGTTCGCCG
AATTGGGTACCAGTGGTAGTGTGGACGGTAGCCGTCGTCTGGTTATCAAG
GGTCGTTTCCAGCAGAAGCAGATTGAGAACGTCTTGAGAAGATACATCGG
TATGTTGCTTTGCTATATGGTTATTTTTCAAATCAATAACGACACTAACG
TTGTATAGTCGAATACGTCACCTGCAAGACCTGCCGCAGTCCCGACACCG
AGCTCAACAAGGGTGAGAACCGTCTATACTTCGTCACCTGCAACTCTTGC
GGTTCTCGTCGTTCCGTCGCCGCCATCAAGACCGGTTTCCGTGGACAGGT
CGGCCGCAGAAAGAGACAGGGTTAA back to topCoding sequence (CDS) from alignment at NKJJ01000020.1:647038..648012- >CAN33_51160-T1 ID=CAN33_51160-T1|Name=CAN33_51160-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2700bp|location=Sequence derived from alignment at NKJJ01000020.1:647038..648012- (Aspergillus niger FDAARGOS_311)
TCGAATACGTCACCTGCAAGACCTGCCGCAGTCCCGACACCGAGCTCAAC
AAGGGTGAGAACCGTCTATACTTCGTCACCTGCAACTCTTGCGGTTCTCG
TCGTTCCGTCGCCGCCATCAAGACCGGTTTCCGTGGACAGGTCGGCCGCA
GAAAGAGACAGGGTTAAAGAAGGAAGGTGCCGTCGCCGAGGAGAAGGAAG
AGGTCGTCCCCGAGGGAGACCACGAAGCTGGAACCGGTATCTGGGCTCAC
GACGCCGCGCAACCCATCCCGTACTCGCTGCTTGTGTCCCGATTCTTCTC
CCTCATTCAGAGCCACCACCCCGATCTGTTGTCCAGCGGTACCAAGTCGT
ATAAGATCCCGCCGCCCCAGTGTCTGCGTGAAGGTAACCGTCGTACGATT
TTCGCCAACATTGCCGATATCTGCAAGCGCATGAAGCGGTCCGATGATCA
CGTTATGCAGTTCTTGTTCGCCGAATTGGGTACCAGTGGTAGTGTGGACG
GTAGCCGTCGTCTGGTTATCAAGGGTCGTTTCCAGCAGAAGCAGATTGAG
AACGTCTTGAGAAGATACATCGACAAGGCCGTCGACGAAGTTACCGAACT
CTTCAAGGATGGATACCAACGGCGAAGTGACGGAGGCTGCTCCGGTTGTT
GAGAAGCCGGTTGCTGAGACTGAGGTCGAATACGTCACCTGCAAGACCTG
CCGCAGTCCCGACACCGAGCTCAACAAGGGTGAGAACCGTCTATACTTCG
TCACCTGCAACTCTTGCGGTTCTCGTCGTTCCGTCGCCGCCATCAAGACC
GGTTTCCGTGGACAGGTCGGCCGCAGAAAGAGACAGGGTTAAAGAAGGAA
GGTGCCGTCGCCGAGGAGAAGGAAGAGGTCGTCCCCGAGGGAGACCACGA
AGCTGGAACCGGTATCTGGGCTCACGACGCCGCGCAACCCATCCCGTACT
CGCTGCTTGTGTCCCGATTCTTCTCCCTCATTCAGAGCCACCACCCCGAT
CTGTTGTCCAGCGGTACCAAGTCGTATAAGATCCCGCCGCCCCAGTGTCT
GCGTGAAGGTAACCGTCGTACGATTTTCGCCAACATTGCCGATATCTGCA
AGCGCATGAAGCGGTCCGATGATCACGTTATGCAGTTCTTGTTCGCCGAA
TTGGGTACCAGTGGTAGTGTGGACGGTAGCCGTCGTCTGGTTATCAAGGG
TCGTTTCCAGCAGAAGCAGATTGAGAACGTCTTGAGAAGATACATCGACA
AGGCCGTCGACGAAGTTACCGAACTCTTCAAGGATGGATACCAACGGCGA
AGTGACGGAGGCTGCTCCGGTTGTTGAGAAGCCGGTTGCTGAGACTGAGG
TCGAATACGTCACCTGCAAGACCTGCCGCAGTCCCGACACCGAGCTCAAC
AAGGGTGAGAACCGTCTATACTTCGTCACCTGCAACTCTTGCGGTTCTCG
TCGTTCCGTCGCCGCCATCAAGACCGGTTTCCGTGGACAGGTCGGCCGCA
GAAAGAGACAGGGTTAAAGAAGGAAGGTGCCGTCGCCGAGGAGAAGGAAG
AGGTCGTCCCCGAGGGAGACCACGAAGCTGGAACCGGTATCTGGGCTCAC
GACGCCGCGCAACCCATCCCGTACTCGCTGCTTGTGTCCCGATTCTTCTC
CCTCATTCAGAGCCACCACCCCGATCTGTTGTCCAGCGGTACCAAGTCGT
ATAAGATCCCGCCGCCCCAGTGTCTGCGTGAAGGTAACCGTCGTACGATT
TTCGCCAACATTGCCGATATCTGCAAGCGCATGAAGCGGTCCGATGATCA
CGTTATGCAGTTCTTGTTCGCCGAATTGGGTACCAGTGGTAGTGTGGACG
GTAGCCGTCGTCTGGTTATCAAGGGTCGTTTCCAGCAGAAGCAGATTGAG
AACGTCTTGAGAAGATACATCGACAAGGCCGTCGACGAAGTTACCGAACT
CTTCAAGGATGGATACCAACGGCGAAGTGACGGAGGCTGCTCCGGTTGTT
GAGAAGCCGGTTGCTGAGACTGAGGTCGAATACGTCACCTGCAAGACCTG
CCGCAGTCCCGACACCGAGCTCAACAAGGGTGAGAACCGTCTATACTTCG
TCACCTGCAACTCTTGCGGTTCTCGTCGTTCCGTCGCCGCCATCAAGACC
GGTTTCCGTGGACAGGTCGGCCGCAGAAAGAGACAGGGTTAAAGAAGGAA
GGTGCCGTCGCCGAGGAGAAGGAAGAGGTCGTCCCCGAGGGAGACCACGA
AGCTGGAACCGGTATCTGGGCTCACGACGCCGCGCAACCCATCCCGTACT
CGCTGCTTGTGTCCCGATTCTTCTCCCTCATTCAGAGCCACCACCCCGAT
CTGTTGTCCAGCGGTACCAAGTCGTATAAGATCCCGCCGCCCCAGTGTCT
GCGTGAAGGTAACCGTCGTACGATTTTCGCCAACATTGCCGATATCTGCA
AGCGCATGAAGCGGTCCGATGATCACGTTATGCAGTTCTTGTTCGCCGAA
TTGGGTACCAGTGGTAGTGTGGACGGTAGCCGTCGTCTGGTTATCAAGGG
TCGTTTCCAGCAGAAGCAGATTGAGAACGTCTTGAGAAGATACATCGACA
AGGCCGTCGACGAAGTTACCGAACTCTTCAAGGATGGATACCAACGGCGA
AGTGACGGAGGCTGCTCCGGTTGTTGAGAAGCCGGTTGCTGAGACTGAGG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
| GO:0003743 | translation initiation factor activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006413 | translational initiation |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264OQ8 |
| DBxref | InterPro:IPR016189 |
| DBxref | InterPro:IPR016190 |
| DBxref | InterPro:IPR000048 |
| DBxref | InterPro:IPR002735 |
| DBxref | PFAM:PF01873 |
| Product | Domain found in IF2B/IF5 family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000020.1 | supercontig | NKJJ01000020.1:647038..648012 - |
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