|
|
Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000020.1:704632..705971- Legend: polypeptideCDSexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_51265-T1 ID=CAN33_51265-T1|Name=CAN33_51265-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1340bp|location=Sequence derived from alignment at NKJJ01000020.1:704632..705971- (Aspergillus niger FDAARGOS_311)
ATGGCCTCTCTAACTACTCCTCCCCGCGTCCCCATCCCCGCCAACGGGGT
CGACTACCGTGGCAAAGTAGTCCTGGCCCCTATGGTGCGCTCCGGCGAAT
TGCCCTCCCGCCTCATTGCCCTCAAGTATGGCGCCGATCTAGTTTGGGGC
CCTGAAACTATCGACCGGGCTATGGCAGGCGCCATCCGCCGTGTGAACCC
CCGCAACGGCACCATCGAATTCACCCGCATGCCCTCCAACGGCGGCCGCA
CCGAAAAGGCAGGCCAAGAATCCGTGATCTACCGTCTCGACCCCGTCCGC
GAGAAAGGCAAACTCATTTATCAAATTGGCACTGCGACGCCTGAAATCGC
CGTCCAAGCAGCCAAACTCGTCGCGGGCGATGTCGCCGGTATCGACGTGA
ACTCGGGATGTCCGAAACCCTTTAGCACGAGCGGTGGTATGGGTGCGGCG
CTTCTCAAGACACCGGATAAGTTGGTTGCGATTCTGGAAGCCCTGGTGAA
GGAGGTCGGGACGCCATTCCAGATCGGTATCTCGGTCAAGATCCGCATTT
TGAAAGATCCCGAGGAGACGAGAGCTCTGGTGTCGCGGCTCGTGAAGACA
GGCATTACGGGCTTGACAGTGCATTGTCGGACGCCGCCCATGAGGCCGCG
TGAACGCGCTATCCGTGATCAGGTGCGCATGATTGCCGACATCTGTCATG
AGGCTGGTGTCGCATGCGTTATAAACGGTGATGTAACCTCCAAAGATGAG
GGACACGCCTTGATGAAAGAGTTCGGCGTCGACGGCGCGATGATCGCCAC
AGCCGCAGAAGCAAACCCATCCTGCTTCCGTACCGAAGCCGAGGGCGGCC
TTCTCCCCTGGAAGGAGGTAGTCCACGAATATATCAAGTTCTGCCTCGAG
TCTGAGAACCGCTTCGGCAACTCCAAATATCTCCTCAACATCCTCGTCCC
CGGCAAGCTCCAGGAAGGCAAGCTTGCAAAGGCAGCCAGGTCCTATGCCG
ATACATGCCACGCCCTCGGATTCGAGGATCTCCTTCCCCTCGCCATGCAA
GTGGACGACATCCTCAACCTCACCGACAAGTCAGTCACTACCAAAGACCT
CCAGTCCGAACACACCCGCAGCAAGGCCGTTCAGAACGCCATGGAGAACA
ACGAATCCGCGCGGGCTGCTGGCGGTGCTTCTCGCGTCAAGTCCACCTCC
CCGCAGTCAGCGCAGGCGGCCCCATTCGCACGAACTCCATCCCAGCTCCT
ACGAAGACCAAGGCTGAGGCGGAGACCCAGGCCGATGTCTCTGTTCCGGC
TCCCGAAGCTGCGCCTCAGAAGCAGGAGCTGACAGCTTAA back to topCoding sequence (CDS) from alignment at NKJJ01000020.1:704632..705971- >CAN33_51265-T1 ID=CAN33_51265-T1|Name=CAN33_51265-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2616bp|location=Sequence derived from alignment at NKJJ01000020.1:704632..705971- (Aspergillus niger FDAARGOS_311)
TCAGCGCAGGCGGCCCCATTCGCACGAACTCCATCCCAGCTCCTACGAAG
ACCAAGGCTGAGGCGGAGACCCAGGCCGATGTCTCTGTTCCGGCTCCCGA
AGCTGCGCCTCAGAAGCAGGAGCTGACAGCTTAAATGGCCTCTCTAACTA
CTCCTCCCCGCGTCCCCATCCCCGCCAACGGGGTCGACTACCGTGGCAAA
GTAGTCCTGGCCCCTATGGTGCGCTCCGGCGAATTGCCCTCCCGCCTCAT
TGCCCTCAAGTATGGCGCCGATCTAGTTTGGGGCCCTGAAACTATCGACC
GGGCTATGGCAGGCGCCATCCGCCGTGTGAACCCCCGCAACGGCACCATC
GAATTCACCCGCATGCCCTCCAACGGCGGCCGCACCGAAAAGGCAGGCCA
AGAATCCGTGATCTACCGTCTCGACCCCGTCCGCGAGAAAGGCAAACTCA
TTTATCAAATTGGCACTGCGACGCCTGAAATCGCCGTCCAAGCAGCCAAA
CTCGTCGCGGGCGATGTCGCCGGTATCGACGTGAACTCGGGATGTCCGAA
ACCCTTTAGCACGAGCGGTGGTATGGGTGCGGCGCTTCTCAAGACACCGG
ATAAGTTGGTTGCGATTCTGGAAGCCCTGGTGAAGGAGGTCGGGACGCCA
TTCCAGATCGGTATCTCGGTCAAGATCCGCATTTTGAAAGATCCCGAGGA
GACGAGAGCTCTGGTGTCGCGGCTCGTGAAGACAGGCATTACGGGCTTGA
CAGTGCATTGTCGGACGCCGCCCATGAGGCCGCGTGAACGCGCTATCCGT
GATCAGGTGCGCATGATTGCCGACATCTGTCATGAGGCTGGTGTCGCATG
CGTTATAAACGGTGATGTAACCTCCAAAGATGAGGGACACGCCTTGATGA
AAGAGTTCGGCGTCGACGGCGCGATGATCGCCACAGCCGCAGAAGCAAAC
CCATCCTGCTTCCGTACCGAAGCCGAGGGCGGCCTTCTCCCCTGGAAGGA
GGTAGTCCACGAATATATCAAGTTCTGCCTCGAGTCTGAGAACCGCTTCG
GCAACTCCAAATATCTCCTCAACATCCTCGTCCCCGGCAAGCTCCAGGAA
GGCAAGCTTGCAAAGGCAGCCAGGTCCTATGCCGATACATGCCACGCCCT
CGGATTCGAGGATCTCCTTCCCCTCGCCATGCAAGTGGACGACATCCTCA
ACCTCACCGACAAGTCAGTCACTACCAAAGACCTCCAGTCCGAACACACC
CGCAGCAAGGCCGTTCAGAACGCCATGGAGAACAACGAATCCGCGCGGGC
TGCTGGCGTCAGCGCAGGCGGCCCCATTCGCACGAACTCCATCCCAGCTC
CTACGAAGACCAAGGCTGAGGCGGAGACCCAGGCCGATGTCTCTGTTCCG
GCTCCCGAAGCTGCGCCTCAGAAGCAGGAGCTGACAGCTTAAATGGCCTC
TCTAACTACTCCTCCCCGCGTCCCCATCCCCGCCAACGGGGTCGACTACC
GTGGCAAAGTAGTCCTGGCCCCTATGGTGCGCTCCGGCGAATTGCCCTCC
CGCCTCATTGCCCTCAAGTATGGCGCCGATCTAGTTTGGGGCCCTGAAAC
TATCGACCGGGCTATGGCAGGCGCCATCCGCCGTGTGAACCCCCGCAACG
GCACCATCGAATTCACCCGCATGCCCTCCAACGGCGGCCGCACCGAAAAG
GCAGGCCAAGAATCCGTGATCTACCGTCTCGACCCCGTCCGCGAGAAAGG
CAAACTCATTTATCAAATTGGCACTGCGACGCCTGAAATCGCCGTCCAAG
CAGCCAAACTCGTCGCGGGCGATGTCGCCGGTATCGACGTGAACTCGGGA
TGTCCGAAACCCTTTAGCACGAGCGGTGGTATGGGTGCGGCGCTTCTCAA
GACACCGGATAAGTTGGTTGCGATTCTGGAAGCCCTGGTGAAGGAGGTCG
GGACGCCATTCCAGATCGGTATCTCGGTCAAGATCCGCATTTTGAAAGAT
CCCGAGGAGACGAGAGCTCTGGTGTCGCGGCTCGTGAAGACAGGCATTAC
GGGCTTGACAGTGCATTGTCGGACGCCGCCCATGAGGCCGCGTGAACGCG
CTATCCGTGATCAGGTGCGCATGATTGCCGACATCTGTCATGAGGCTGGT
GTCGCATGCGTTATAAACGGTGATGTAACCTCCAAAGATGAGGGACACGC
CTTGATGAAAGAGTTCGGCGTCGACGGCGCGATGATCGCCACAGCCGCAG
AAGCAAACCCATCCTGCTTCCGTACCGAAGCCGAGGGCGGCCTTCTCCCC
TGGAAGGAGGTAGTCCACGAATATATCAAGTTCTGCCTCGAGTCTGAGAA
CCGCTTCGGCAACTCCAAATATCTCCTCAACATCCTCGTCCCCGGCAAGC
TCCAGGAAGGCAAGCTTGCAAAGGCAGCCAGGTCCTATGCCGATACATGC
CACGCCCTCGGATTCGAGGATCTCCTTCCCCTCGCCATGCAAGTGGACGA
CATCCTCAACCTCACCGACAAGTCAGTCACTACCAAAGACCTCCAGTCCG
AACACACCCGCAGCAAGGCCGTTCAGAACGCCATGGAGAACAACGAATCC
GCGCGGGCTGCTGGCG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0008033 | tRNA processing |
| GO:0055114 | oxidation-reduction process |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003824 | catalytic activity |
| GO:0017150 | tRNA dihydrouridine synthase activity |
| GO:0050660 | flavin adenine dinucleotide binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG092628FW |
| DBxref | InterPro:IPR035587 |
| DBxref | InterPro:IPR018517 |
| DBxref | InterPro:IPR013785 |
| DBxref | InterPro:IPR001269 |
| DBxref | PFAM:PF01207 |
| Product | Dihydrouridine synthase (Dus) family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000020.1 | supercontig | NKJJ01000020.1:704632..705971 - |
|
