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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000020.1:1366385..1368211- Legend: CDSpolypeptideexon Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_52235-T1 ID=CAN33_52235-T1|Name=CAN33_52235-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1827bp|location=Sequence derived from alignment at NKJJ01000020.1:1366385..1368211- (Aspergillus niger FDAARGOS_311)
ATGTCCGGGAACACAGCGGAGGGCCAACAAGTCCCTACCCACGAAACCGA
CTATTCAACATGGACTACGTCGAGACTTGTTGCCCGAATCACTGAACTAG
AACGCCAGTTACATTCCCGCACAGCAGAGTACGCTGCATCCCCTGCGAAG
CAGCCCGAGGACGCGGCCAAAGACGCTGCCAAGAGTGCACCGAGTGATGG
GAAAGTGAACCAGAAGGAGCCTTCATCTCCTGCGGTGGGAGCGGAGAAGA
AGAAGCAGGTGAAGCCGCCAAAGCCGCCGAAACCGCGCCGGGAAATTGAT
CCGTCGAGATACAATACACGGTTCATCGCGTTGAAGTTCGCCTACCTTGG
ACAGCGGTACAATGGGCTTGAGCATGCAAACGGGAATGCCACGCCGCTAC
CTACGATCGAGGAGGAGATGTACAAGGCTCTACGGAAGACGCGGTTGATT
TTCCCGACGGATACAACCGGTGATGAATTCGTGGAGAGCTATGCGCCGAG
AGAGACGAAGCCGTATTATATCAATTGGGATGGATGTGAATATTCCAAGG
CTGGGCGTACGGACCGAGGAGTCAGTGCCTTCGGGCAAGTGATTGGCATT
AGAGTGCGGAGTGCACGGCCGAAGCGCGACGAGGTTGTGCAGTCGGACGA
AAACGCCGATACCACCATGCAGAATACGGACGAGGCTAATGCTTCGGTCG
ACGATGGCTGGGACGACATCAAAGATGAGCTACCCTACGTGAGCATGTTG
AACAAGGTGCTTCCTGAGGATATTCGTGTATTGGCATGGTGCCCGCGTCC
TCCTGAGGGGTTCGATGCCCGCTTTTCTTGCGGGGAACGCCATTACAAGT
ATTTCTTCACGCAGCCAGCCTTTTCTCCTACGCCGGGCGCTTCGGGCTTT
GTGCCGCGAGATGGAACAGGCAAGCCTCCGAAGCTGAGAGAGGGTTGGTT
AGACATTGAAGCGATGCGCAAAGCTGCGAAGTATTTCGAAGGGACACACG
ACTTCCGGAACTTCTGTAAATTGGACGTGACGAAACAAATCGAGTCTTTC
TACCGAGACATCTTCCGTGCCGACATTGAGCTTCTCGATGCTCGCACCAA
TCCACTGGGCTATGTGACTCAGCCGGAATTCCAGGCTAGACCGGCCTCAG
GTGCGGATGAAAGCGCAGAGTCTTCAGCGGCACCTCTGCCAACAGCAGCG
CAGGTATATGTCTTCCATCTGGAGGGTTCTGCTTTCCTGTGGCATCAGGT
CCGACATATGGTCAATGTCCTTTTCCTCGTCGGTCAGGGACTCGAGGAAC
CATCCATTGTACAGGATCTCCTTGACGTGACCAAGAACCCGCGAAAACCA
ACCTACGAGATGGCTTCTGATGCCCCCCTGGTGCTTTGGGACTGCATCTA
CCCCGATAAGAAGAGCGGCAGCCGTGCTGATAGCTTGGATTGGGTTTATG
CGGGCGACGTTCGGCAGATCAAGTCTCACCTCGGTAAGGGAGGTGGAAAG
TTTGGTCTTGGAGGGATTGTAGAGGAGCTCTGGTCCGTTTGGAGGCAGCG
CAAGATGGAGGAAATCCTTGCTGGCGCATTACTGGACTTGGCCGTTAGTC
AGGGCGACAAGAGGCTCACTATTGGTGATGGAGTCGAGCCAATCTGGGAG
AGAAAGAACCGGGGTAAGAAAATCTTCGTTGGGTCGAATGAAGCCAGAAC
CGGCGGGTACTATGTCCCAGTCATGCAGAAGAGAAAGACAGAGCTCGTGG
AAGTCCAGAACGCGAGGTGGCTGGCGGCAAAGCAGCGCAGGATGGAGAAT
GGCGCAAAGGCCACCAAGATGGAATAG back to topCoding sequence (CDS) from alignment at NKJJ01000020.1:1366385..1368211- >CAN33_52235-T1 ID=CAN33_52235-T1|Name=CAN33_52235-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=1827bp|location=Sequence derived from alignment at NKJJ01000020.1:1366385..1368211- (Aspergillus niger FDAARGOS_311)
ATGTCCGGGAACACAGCGGAGGGCCAACAAGTCCCTACCCACGAAACCGA
CTATTCAACATGGACTACGTCGAGACTTGTTGCCCGAATCACTGAACTAG
AACGCCAGTTACATTCCCGCACAGCAGAGTACGCTGCATCCCCTGCGAAG
CAGCCCGAGGACGCGGCCAAAGACGCTGCCAAGAGTGCACCGAGTGATGG
GAAAGTGAACCAGAAGGAGCCTTCATCTCCTGCGGTGGGAGCGGAGAAGA
AGAAGCAGGTGAAGCCGCCAAAGCCGCCGAAACCGCGCCGGGAAATTGAT
CCGTCGAGATACAATACACGGTTCATCGCGTTGAAGTTCGCCTACCTTGG
ACAGCGGTACAATGGGCTTGAGCATGCAAACGGGAATGCCACGCCGCTAC
CTACGATCGAGGAGGAGATGTACAAGGCTCTACGGAAGACGCGGTTGATT
TTCCCGACGGATACAACCGGTGATGAATTCGTGGAGAGCTATGCGCCGAG
AGAGACGAAGCCGTATTATATCAATTGGGATGGATGTGAATATTCCAAGG
CTGGGCGTACGGACCGAGGAGTCAGTGCCTTCGGGCAAGTGATTGGCATT
AGAGTGCGGAGTGCACGGCCGAAGCGCGACGAGGTTGTGCAGTCGGACGA
AAACGCCGATACCACCATGCAGAATACGGACGAGGCTAATGCTTCGGTCG
ACGATGGCTGGGACGACATCAAAGATGAGCTACCCTACGTGAGCATGTTG
AACAAGGTGCTTCCTGAGGATATTCGTGTATTGGCATGGTGCCCGCGTCC
TCCTGAGGGGTTCGATGCCCGCTTTTCTTGCGGGGAACGCCATTACAAGT
ATTTCTTCACGCAGCCAGCCTTTTCTCCTACGCCGGGCGCTTCGGGCTTT
GTGCCGCGAGATGGAACAGGCAAGCCTCCGAAGCTGAGAGAGGGTTGGTT
AGACATTGAAGCGATGCGCAAAGCTGCGAAGTATTTCGAAGGGACACACG
ACTTCCGGAACTTCTGTAAATTGGACGTGACGAAACAAATCGAGTCTTTC
TACCGAGACATCTTCCGTGCCGACATTGAGCTTCTCGATGCTCGCACCAA
TCCACTGGGCTATGTGACTCAGCCGGAATTCCAGGCTAGACCGGCCTCAG
GTGCGGATGAAAGCGCAGAGTCTTCAGCGGCACCTCTGCCAACAGCAGCG
CAGGTATATGTCTTCCATCTGGAGGGTTCTGCTTTCCTGTGGCATCAGGT
CCGACATATGGTCAATGTCCTTTTCCTCGTCGGTCAGGGACTCGAGGAAC
CATCCATTGTACAGGATCTCCTTGACGTGACCAAGAACCCGCGAAAACCA
ACCTACGAGATGGCTTCTGATGCCCCCCTGGTGCTTTGGGACTGCATCTA
CCCCGATAAGAAGAGCGGCAGCCGTGCTGATAGCTTGGATTGGGTTTATG
CGGGCGACGTTCGGCAGATCAAGTCTCACCTCGGTAAGGGAGGTGGAAAG
TTTGGTCTTGGAGGGATTGTAGAGGAGCTCTGGTCCGTTTGGAGGCAGCG
CAAGATGGAGGAAATCCTTGCTGGCGCATTACTGGACTTGGCCGTTAGTC
AGGGCGACAAGAGGCTCACTATTGGTGATGGAGTCGAGCCAATCTGGGAG
AGAAAGAACCGGGGTAAGAAAATCTTCGTTGGGTCGAATGAAGCCAGAAC
CGGCGGGTACTATGTCCCAGTCATGCAGAAGAGAAAGACAGAGCTCGTGG
AAGTCCAGAACGCGAGGTGGCTGGCGGCAAAGCAGCGCAGGATGGAGAAT
GGCGCAAAGGCCACCAAGATGGAATAG back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0001522 | pseudouridine synthesis |
| GO:0009451 | RNA modification |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0009982 | pseudouridine synthase activity |
| GO:0003723 | RNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following CDS feature(s) are a part of this mRNA:
The following exon feature(s) are a part of this mRNA:
The following polypeptide feature(s) derives from this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09263UAJ |
| DBxref | InterPro:IPR020103 |
| DBxref | InterPro:IPR001406 |
| DBxref | InterPro:IPR020095 |
| DBxref | InterPro:IPR020097 |
| DBxref | PFAM:PF01416 |
| Product | tRNA pseudouridine synthase family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000020.1 | supercontig | NKJJ01000020.1:1366385..1368211 - |
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