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CAN33_52245-T1, CAN33_52245-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_52245-T1
Unique NameCAN33_52245-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000020.1:1370435..1371395-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_52245-T1 ID=CAN33_52245-T1|Name=CAN33_52245-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=961bp|location=Sequence derived from alignment at NKJJ01000020.1:1370435..1371395- (Aspergillus niger FDAARGOS_311)
ATGGCCCCCTCTCAGCTCCCCCCGATCTTCAACCCCACCTCCCAGGACAT
TGAGATGCTCCTCGCAGCTCAGTGCCACCTCGGGTCCAAGAACCTCCAGT
CTCACATGGAGCCTTACCTCTGGAAGACTCGCCCCGACGGTGTCAATGTC
ATCAACATTGGCAAGACCTGGTATGTTGATCAGGCGATATATTGCGCGCA
ACTCATTTAGGATCGCTGCCTAACACCGCGCGAAAACTTAGGGAGAAGAT
CCTCCTCGCTGCCCGTATCATCGCCGCCATCGACAACCCGGCCGACATCT
GTGTCATCTCCGCTCGTCCCTACGGCCAGCGTGCTGTCCTGAAGTTCGCC
TCCCACACCGGTGCTACCGCCATTGCTGGTCGTTTCACCCCCGGTAACTT
CACCAACTACATCACCCGCTCTTTCAAGGAGCCCCGCCTGATCATCGTCA
CCGACCCTCGCACCGACGCCCAGGCCATCAAGGAGGCCAGCTACGTCAAC
ATCCCCGTCATTGCCCTTTGCGACACTGACTCCCCCACCGACTTCGTTGA
CGTTGCTATCCCCACCAACAACAAGGGTCGCCACGCCATCGGTCTCGTCT
GGTGGCTCCTTGCCCGTGAGGTCCTCCGCCTCCGTGGTACCCTCGCTTCC
CGTGAGGTTGACTGGGACGTCGTTGTCGACCTGTACTTCTACCGTGACCC
CGAGGCTGAGGAGAACAAGGAGGTCGTCGAGGAGAAGGTTGCCAGCGCTG
AGGAGGTCGGTGCTGGTGCCATCGAGTCCGGCTTCGCTGGTGAGAACTGG
GATGTTGCCGGTGCCGGTGCCGGTGTTCCTGGCACTGCTTTCGCTGCTGC
TAGCGCTGCTGCTGGTGCTGCCAGCTGGGAGGCCGAGGGTGGCGACTGGG
CTGCCAGCTCTGCCGCTCCTGCTGGTGAGAGCTGGGCTGAGGCCCAGCCC
ACCGAGGCTAA
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Coding sequence (CDS) from alignment at NKJJ01000020.1:1370435..1371395-

>CAN33_52245-T1 ID=CAN33_52245-T1|Name=CAN33_52245-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=2169bp|location=Sequence derived from alignment at NKJJ01000020.1:1370435..1371395- (Aspergillus niger FDAARGOS_311)
GCTAAGGAGAAGATCCTCCTCGCTGCCCGTATCATCGCCGCCATCGACAA
CCCGGCCGACATCTGTGTCATCTCCGCTCGTCCCTACGGCCAGCGTGCTG
TCCTGAAGTTCGCCTCCCACACCGGTGCTACCGCCATTGCTGGTCGTTTC
ACCCCCGGTAACTTCACCAACTACATCACCCGCTCTTTCAAGGAGCCCCG
CCTGATCATCGTCACCGACCCTCGCACCGACGCCCAGGCCATCAAGGAGG
CCAGCTACGTCAACATCCCCGTCATTGCCCTTTGCGACACTGACTCCCCC
ACCGACTTCGTTGACGTTGCTATCCCCACCAACAACAAGGGTCGCCACGC
CATCGGTCTCGTCTGGTGGCTCCTTGCCCGTGAGGTCCTCCGCCTCCGTG
GTACCCTCGCTTCCCGTGAGGTTGACTGGGACGTCGTTGTCGACCTGTAC
TTCTACCGTGACCCCGAGGCTGAGGAGAACAAGGAGGTCGTCGAGGAGAA
GGTTGCCAGCGCTGAGGAGGTCGGTGCTGGTGCCATCGAGTCCGGCTTCG
CTGATGGCCCCCTCTCAGCTCCCCCCGATCTTCAACCCCACCTCCCAGGA
CATTGAGATGCTCCTCGCAGCTCAGTGCCACCTCGGGTCCAAGAACCTCC
AGTCTCACATGGAGCCTTACCTCTGGAAGACTCGCCCCGACGGTGTCAAT
GTCATCAACATTGGCAAGACCTGGCTAAGGAGAAGATCCTCCTCGCTGCC
CGTATCATCGCCGCCATCGACAACCCGGCCGACATCTGTGTCATCTCCGC
TCGTCCCTACGGCCAGCGTGCTGTCCTGAAGTTCGCCTCCCACACCGGTG
CTACCGCCATTGCTGGTCGTTTCACCCCCGGTAACTTCACCAACTACATC
ACCCGCTCTTTCAAGGAGCCCCGCCTGATCATCGTCACCGACCCTCGCAC
CGACGCCCAGGCCATCAAGGAGGCCAGCTACGTCAACATCCCCGTCATTG
CCCTTTGCGACACTGACTCCCCCACCGACTTCGTTGACGTTGCTATCCCC
ACCAACAACAAGGGTCGCCACGCCATCGGTCTCGTCTGGTGGCTCCTTGC
CCGTGAGGTCCTCCGCCTCCGTGGTACCCTCGCTTCCCGTGAGGTTGACT
GGGACGTCGTTGTCGACCTGTACTTCTACCGTGACCCCGAGGCTGAGGAG
AACAAGGAGGTCGTCGAGGAGAAGGTTGCCAGCGCTGAGGAGGTCGGTGC
TGGTGCCATCGAGTCCGGCTTCGCTGATGGCCCCCTCTCAGCTCCCCCCG
ATCTTCAACCCCACCTCCCAGGACATTGAGATGCTCCTCGCAGCTCAGTG
CCACCTCGGGTCCAAGAACCTCCAGTCTCACATGGAGCCTTACCTCTGGA
AGACTCGCCCCGACGGTGTCAATGTCATCAACATTGGCAAGACCTGGCTA
AGGAGAAGATCCTCCTCGCTGCCCGTATCATCGCCGCCATCGACAACCCG
GCCGACATCTGTGTCATCTCCGCTCGTCCCTACGGCCAGCGTGCTGTCCT
GAAGTTCGCCTCCCACACCGGTGCTACCGCCATTGCTGGTCGTTTCACCC
CCGGTAACTTCACCAACTACATCACCCGCTCTTTCAAGGAGCCCCGCCTG
ATCATCGTCACCGACCCTCGCACCGACGCCCAGGCCATCAAGGAGGCCAG
CTACGTCAACATCCCCGTCATTGCCCTTTGCGACACTGACTCCCCCACCG
ACTTCGTTGACGTTGCTATCCCCACCAACAACAAGGGTCGCCACGCCATC
GGTCTCGTCTGGTGGCTCCTTGCCCGTGAGGTCCTCCGCCTCCGTGGTAC
CCTCGCTTCCCGTGAGGTTGACTGGGACGTCGTTGTCGACCTGTACTTCT
ACCGTGACCCCGAGGCTGAGGAGAACAAGGAGGTCGTCGAGGAGAAGGTT
GCCAGCGCTGAGGAGGTCGGTGCTGGTGCCATCGAGTCCGGCTTCGCTGA
TGGCCCCCTCTCAGCTCCCCCCGATCTTCAACCCCACCTCCCAGGACATT
GAGATGCTCCTCGCAGCTCAGTGCCACCTCGGGTCCAAGAACCTCCAGTC
TCACATGGAGCCTTACCTCTGGAAGACTCGCCCCGACGGTGTCAATGTCA
TCAACATTGGCAAGACCTG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Cellular Component
TermDefinition
GO:0015935small ribosomal subunit
GO:0005840ribosome
Vocabulary: Molecular Function
TermDefinition
GO:0003735structural constituent of ribosome
Vocabulary: Biological Process
TermDefinition
GO:0006412translation
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
RPS0CAN33_52245Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_52245-T1CAN33_52245-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_52245-T1.cdsCAN33_52245-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_52245-T1.exon3CAN33_52245-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_52245-T1.exon2CAN33_52245-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_52245-T1.exon1CAN33_52245-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
DBxrefInterPro:IPR023591
DBxrefInterPro:IPR027498
DBxrefInterPro:IPR018130
DBxrefInterPro:IPR005707
DBxrefInterPro:IPR001865
Productstructural constituent of ribosome
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000020.1supercontigNKJJ01000020.1:1370435..1371395 -
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