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CAN33_52260-T1, CAN33_52260-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_52260-T1
Unique NameCAN33_52260-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000020.1:1377892..1379937-

Legend: polypeptideCDSexon
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_52260-T1 ID=CAN33_52260-T1|Name=CAN33_52260-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=2046bp|location=Sequence derived from alignment at NKJJ01000020.1:1377892..1379937- (Aspergillus niger FDAARGOS_311)
ATGGCCCCCAAACCACCCCCGGGCACCTCCGCCAGAGCATGGGACGGAGT
GACGCCCGCCCTGTCGGAATGGGTGCTGGATGCCGTTGCTTCTATGGGCT
TCACCCGCATGACCCCCGTTCAGGCTTCTGCGATTCCCTTGTTCATGGCG
CATAAAGATGTCGTTGTTGAAGCAGTCACAGGAAGTGGAAAGACCTTGTC
TTTCTTGATTCCAGTTGTCGAGAAGCTTTTGCGCCTGGAAGAACCACTCA
AGAAACACCATGTCGGAGCCATCATCATCTCTCCAACCAGGTTGGTCATA
CCGTATACCGTTGAAAAGGTCACGGTCACAGTACTGACAGTTGCGCTTAA
GAGAACTCGCATCGCAGATTTACAACGTTCTGACATCGTTGCTCGCCTTC
CATCCTCCATCCGCCTCCACTCTCAAACCCTCCGATGATGACGATGATGC
ACCTCGTCAGAAATTCCCCTCCTCGACCCTCAAAGTTGTCCCGCAGCTCC
TTCTCGGTGGTTCGACCACTCCGGCTGAGGATTTGAGTACCTTCTTGAAG
CGGTCTCCCAATCTGTTGGTATCTACGCCAGGACGACTGTTGGAGTTGCT
CTCTTCACCCCATGTCCACTGCCCCCAGTCGTCTTTCGAAATGCTTGTCA
TGGATGAAGCGGACAGGCTTCTGGATCTTGGATTCAAGGATACACTACAG
AACATCTTGCGCCGTCTACCCAAGCAACGGCGCACGGGGTTGTTCAGTGC
CAGTGTCAGTGAGGCTGTTGATCAGATTGTTCGGGTTGGTCTGCGCAACC
CCGTCAAAGTCATGGTCAAGGTAAAGGGCACTTCAGGTGTTCAGGATAAA
CGCACACCCGCTAGGTCCGTACCCTTGTTCCTCCATCATTGAAGCATCCT
GTAACTGACAGCCATACTAGCTTGCAAATGACGTACCTCACAGCTCCCCC
AACTCACAAATTCCCTGCCATCAAACACATTCTCTACTCACTCGAGCCCG
CTCCTCAAAAGACCATCATGTTCGTCTCAACATGCTCGGGTGTCGACTAC
CTCTCCGCAATCCTTCCTTCAATCATCGGCGATGACTTCCAACTGATCCC
GCTGCACGGCAAACACCAAGCAAACGTCCGCGAAAAGAACTTCAACCGCT
TCGTCAACTCCCACACCCCCGCCATTCTCCTCACCACCGACGTTGCTTCC
CGTGGACTAGACATCCCCTCAGTCGACGTCGTAATACAGATTGACCCCCC
TTCAGACCCAAAGACTTTCATCCACAGATGCGGCCGTGCCGGACGTGCAG
GCCGCAAAGGTCTGAGTGTGGTCCTTCTTCACCCCGGCCGAGAGGAAGAC
TACGTCTCGTTCCTCGAAGTCCGCAAGACCCCCGTCGCACCGTATCCTCA
CACTCTCACCATAACCGACGCAGACGCCGCTGCAGCCACCGAAACGGCAC
GTAAAGCCGTCCTTGCAGACCGCGCACTACACGACAGGGGCCAGAAGGCC
TTCGTCAGCTGGTTCCGAAGCTACAGCAAGCACCAGGCTAGCAGCATATT
CCGCGTCGCAGACCTCGATTGGGAAGGACTAGGCAATGCATGGGGTCTCC
TGAAGCTTCCCAAGATGCCCGAGTTGAGAAACTTCCAAGGTGACCGGACG
CTCGGCGTGAACTTGGACTGGGAGAACTACGCATACAAGGACAAACAGCG
CGAGAAGCGCCGGAAGGAACAAGTGCAGGAGAATGCCGAGAACGGTGTCG
CGGACGATCAAGCTGCTGGCAAGAAGCGCTCCAGCGAGAGCGTCGCGTGG
AGCAGGAATCTCGACAACCGGAATAAAAAGCTGAAGCGTCGGGAGGCCAA
GCAAGCGCGTCAGCAGAAGGACAAATGGGAGAAGATGACGGAGGAAGAGC
GACAAAAGGTGCTCGAGACGGAGAAGATGCTTGAGCAGATCCGGGTGAAG
AACGAAGAAGAACGACTGCTTAGGCGTGCAGCCAAAGATAAGGAATCTAA
GGCTGCTGGTGGGGATGATGATGATGAGTTCAAGGGGTTTGACTGA
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Coding sequence (CDS) from alignment at NKJJ01000020.1:1377892..1379937-

>CAN33_52260-T1 ID=CAN33_52260-T1|Name=CAN33_52260-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=5787bp|location=Sequence derived from alignment at NKJJ01000020.1:1377892..1379937- (Aspergillus niger FDAARGOS_311)
CTTGCAAATGACGTACCTCACAGCTCCCCCAACTCACAAATTCCCTGCCA
TCAAACACATTCTCTACTCACTCGAGCCCGCTCCTCAAAAGACCATCATG
TTCGTCTCAACATGCTCGGGTGTCGACTACCTCTCCGCAATCCTTCCTTC
AATCATCGGCGATGACTTCCAACTGATCCCGCTGCACGGCAAACACCAAG
CAAACGTCCGCGAAAAGAACTTCAACCGCTTCGTCAACTCCCACACCCCC
GCCATTCTCCTCACCACCGACGTTGCTTCCCGTGGACTAGACATCCCCTC
AGTCGACGTCGTAATACAGATTGACCCCCCTTCAGACCCAAAGACTTTCA
TCCACAGATGCGGCCGTGCCGGACGTGCAGGCCGCAAAGGTCTGAGTGTG
GTCCTTCTTCACCCCGGCCGAGAGGAAGACTACGTCTCGTTCCTCGAAGT
CCGCAAGACCCCCGTCGCACCGTATCCTCACACTCTCACCATAACCGACG
CAGACGCCGCTGCAGCCACCGAAACGGCACGTAAAGCCGTCCTTGCAGAC
CGCGCACTACACGACAGGGGCCAGAAGGCCTTCGTCAGCTGGTTCCGAAG
CTACAGCAAGCACCAGGCTAGCAGCATATTCCGCGTCGCAGACCTCGATT
GGGAAGGACTAGGCAATGCATGGGGTCTCCTGAAGCTTCCCAAGATGCCC
GAGTTGAGAAACTTCCAAGGTGACCGGACGCTCGGCGTGAACTTGGACTG
GGAGAACTACGCATACAAGGACAAACAGCGCGAGAAGCGCCGGAAGGAAC
AAGTGCAGGAGAATGCCGAGAACGGTGTCGCGGACGATCAAGCTGCTGGC
AAGAAGCGCTCCAGCGAGAGCGTCGCGTGGAGCAGGAATCTCGACAACCG
GAATAAAAAGCTGAAGCGTCGGGAGGCCAAGCAAGCGCGTCAGCAGAAGG
ACAAATGGGAGAAGATGACGGAGGAAGAGCGACAAAAGGTGCTCGAGACG
GAGAAGATGCTTGAGCAGATCCGGGTGAAGAACGAAGAAGAACGACTGCT
TAGGCGTGCAGCCAAAGATAAGGAATCTAAGGCTGCTGGTGGGGATGATG
ATGATGAGTTCAAGGGGTTTGACTGAAGAACTCGCATCGCAGATTTACAA
CGTTCTGACATCGTTGCTCGCCTTCCATCCTCCATCCGCCTCCACTCTCA
AACCCTCCGATGATGACGATGATGCACCTCGTCAGAAATTCCCCTCCTCG
ACCCTCAAAGTTGTCCCGCAGCTCCTTCTCGGTGGTTCGACCACTCCGGC
TGAGGATTTGAGTACCTTCTTGAAGCGGTCTCCCAATCTGTTGGTATCTA
CGCCAGGACGACTGTTGGAGTTGCTCTCTTCACCCCATGTCCACTGCCCC
CAGTCGTCTTTCGAAATGCTTGTCATGGATGAAGCGGACAGGCTTCTGGA
TCTTGGATTCAAGGATACACTACAGAACATCTTGCGCCGTCTACCCAAGC
AACGGCGCACGGGGTTGTTCAGTGCCAGTGTCAGTGAGGCTGTTGATCAG
ATTGTTCGGGTTGGTCTGCGCAACCCCGTCAAAGTCATGGTCAAGGTAAA
GGGCACTTCAGGTGTTCAGGATAAACGCACACCCGCTAGATGGCCCCCAA
ACCACCCCCGGGCACCTCCGCCAGAGCATGGGACGGAGTGACGCCCGCCC
TGTCGGAATGGGTGCTGGATGCCGTTGCTTCTATGGGCTTCACCCGCATG
ACCCCCGTTCAGGCTTCTGCGATTCCCTTGTTCATGGCGCATAAAGATGT
CGTTGTTGAAGCAGTCACAGGAAGTGGAAAGACCTTGTCTTTCTTGATTC
CAGTTGTCGAGAAGCTTTTGCGCCTGGAAGAACCACTCAAGAAACACCAT
GTCGGAGCCATCATCATCTCTCCAACCAGCTTGCAAATGACGTACCTCAC
AGCTCCCCCAACTCACAAATTCCCTGCCATCAAACACATTCTCTACTCAC
TCGAGCCCGCTCCTCAAAAGACCATCATGTTCGTCTCAACATGCTCGGGT
GTCGACTACCTCTCCGCAATCCTTCCTTCAATCATCGGCGATGACTTCCA
ACTGATCCCGCTGCACGGCAAACACCAAGCAAACGTCCGCGAAAAGAACT
TCAACCGCTTCGTCAACTCCCACACCCCCGCCATTCTCCTCACCACCGAC
GTTGCTTCCCGTGGACTAGACATCCCCTCAGTCGACGTCGTAATACAGAT
TGACCCCCCTTCAGACCCAAAGACTTTCATCCACAGATGCGGCCGTGCCG
GACGTGCAGGCCGCAAAGGTCTGAGTGTGGTCCTTCTTCACCCCGGCCGA
GAGGAAGACTACGTCTCGTTCCTCGAAGTCCGCAAGACCCCCGTCGCACC
GTATCCTCACACTCTCACCATAACCGACGCAGACGCCGCTGCAGCCACCG
AAACGGCACGTAAAGCCGTCCTTGCAGACCGCGCACTACACGACAGGGGC
CAGAAGGCCTTCGTCAGCTGGTTCCGAAGCTACAGCAAGCACCAGGCTAG
CAGCATATTCCGCGTCGCAGACCTCGATTGGGAAGGACTAGGCAATGCAT
GGGGTCTCCTGAAGCTTCCCAAGATGCCCGAGTTGAGAAACTTCCAAGGT
GACCGGACGCTCGGCGTGAACTTGGACTGGGAGAACTACGCATACAAGGA
CAAACAGCGCGAGAAGCGCCGGAAGGAACAAGTGCAGGAGAATGCCGAGA
ACGGTGTCGCGGACGATCAAGCTGCTGGCAAGAAGCGCTCCAGCGAGAGC
GTCGCGTGGAGCAGGAATCTCGACAACCGGAATAAAAAGCTGAAGCGTCG
GGAGGCCAAGCAAGCGCGTCAGCAGAAGGACAAATGGGAGAAGATGACGG
AGGAAGAGCGACAAAAGGTGCTCGAGACGGAGAAGATGCTTGAGCAGATC
CGGGTGAAGAACGAAGAAGAACGACTGCTTAGGCGTGCAGCCAAAGATAA
GGAATCTAAGGCTGCTGGTGGGGATGATGATGATGAGTTCAAGGGGTTTG
ACTGAAGAACTCGCATCGCAGATTTACAACGTTCTGACATCGTTGCTCGC
CTTCCATCCTCCATCCGCCTCCACTCTCAAACCCTCCGATGATGACGATG
ATGCACCTCGTCAGAAATTCCCCTCCTCGACCCTCAAAGTTGTCCCGCAG
CTCCTTCTCGGTGGTTCGACCACTCCGGCTGAGGATTTGAGTACCTTCTT
GAAGCGGTCTCCCAATCTGTTGGTATCTACGCCAGGACGACTGTTGGAGT
TGCTCTCTTCACCCCATGTCCACTGCCCCCAGTCGTCTTTCGAAATGCTT
GTCATGGATGAAGCGGACAGGCTTCTGGATCTTGGATTCAAGGATACACT
ACAGAACATCTTGCGCCGTCTACCCAAGCAACGGCGCACGGGGTTGTTCA
GTGCCAGTGTCAGTGAGGCTGTTGATCAGATTGTTCGGGTTGGTCTGCGC
AACCCCGTCAAAGTCATGGTCAAGGTAAAGGGCACTTCAGGTGTTCAGGA
TAAACGCACACCCGCTAGATGGCCCCCAAACCACCCCCGGGCACCTCCGC
CAGAGCATGGGACGGAGTGACGCCCGCCCTGTCGGAATGGGTGCTGGATG
CCGTTGCTTCTATGGGCTTCACCCGCATGACCCCCGTTCAGGCTTCTGCG
ATTCCCTTGTTCATGGCGCATAAAGATGTCGTTGTTGAAGCAGTCACAGG
AAGTGGAAAGACCTTGTCTTTCTTGATTCCAGTTGTCGAGAAGCTTTTGC
GCCTGGAAGAACCACTCAAGAAACACCATGTCGGAGCCATCATCATCTCT
CCAACCAGCTTGCAAATGACGTACCTCACAGCTCCCCCAACTCACAAATT
CCCTGCCATCAAACACATTCTCTACTCACTCGAGCCCGCTCCTCAAAAGA
CCATCATGTTCGTCTCAACATGCTCGGGTGTCGACTACCTCTCCGCAATC
CTTCCTTCAATCATCGGCGATGACTTCCAACTGATCCCGCTGCACGGCAA
ACACCAAGCAAACGTCCGCGAAAAGAACTTCAACCGCTTCGTCAACTCCC
ACACCCCCGCCATTCTCCTCACCACCGACGTTGCTTCCCGTGGACTAGAC
ATCCCCTCAGTCGACGTCGTAATACAGATTGACCCCCCTTCAGACCCAAA
GACTTTCATCCACAGATGCGGCCGTGCCGGACGTGCAGGCCGCAAAGGTC
TGAGTGTGGTCCTTCTTCACCCCGGCCGAGAGGAAGACTACGTCTCGTTC
CTCGAAGTCCGCAAGACCCCCGTCGCACCGTATCCTCACACTCTCACCAT
AACCGACGCAGACGCCGCTGCAGCCACCGAAACGGCACGTAAAGCCGTCC
TTGCAGACCGCGCACTACACGACAGGGGCCAGAAGGCCTTCGTCAGCTGG
TTCCGAAGCTACAGCAAGCACCAGGCTAGCAGCATATTCCGCGTCGCAGA
CCTCGATTGGGAAGGACTAGGCAATGCATGGGGTCTCCTGAAGCTTCCCA
AGATGCCCGAGTTGAGAAACTTCCAAGGTGACCGGACGCTCGGCGTGAAC
TTGGACTGGGAGAACTACGCATACAAGGACAAACAGCGCGAGAAGCGCCG
GAAGGAACAAGTGCAGGAGAATGCCGAGAACGGTGTCGCGGACGATCAAG
CTGCTGGCAAGAAGCGCTCCAGCGAGAGCGTCGCGTGGAGCAGGAATCTC
GACAACCGGAATAAAAAGCTGAAGCGTCGGGAGGCCAAGCAAGCGCGTCA
GCAGAAGGACAAATGGGAGAAGATGACGGAGGAAGAGCGACAAAAGGTGC
TCGAGACGGAGAAGATGCTTGAGCAGATCCGGGTGAAGAACGAAGAAGAA
CGACTGCTTAGGCGTGCAGCCAAAGATAAGGAATCTAAGGCTGCTGGTGG
GGATGATGATGATGAGTTCAAGGGGTTTGACTGAAGAACTCGCATCGCAG
ATTTACAACGTTCTGACATCGTTGCTCGCCTTCCATCCTCCATCCGCCTC
CACTCTCAAACCCTCCGATGATGACGATGATGCACCTCGTCAGAAATTCC
CCTCCTCGACCCTCAAAGTTGTCCCGCAGCTCCTTCTCGGTGGTTCGACC
ACTCCGGCTGAGGATTTGAGTACCTTCTTGAAGCGGTCTCCCAATCTGTT
GGTATCTACGCCAGGACGACTGTTGGAGTTGCTCTCTTCACCCCATGTCC
ACTGCCCCCAGTCGTCTTTCGAAATGCTTGTCATGGATGAAGCGGACAGG
CTTCTGGATCTTGGATTCAAGGATACACTACAGAACATCTTGCGCCGTCT
ACCCAAGCAACGGCGCACGGGGTTGTTCAGTGCCAGTGTCAGTGAGGCTG
TTGATCAGATTGTTCGGGTTGGTCTGCGCAACCCCGTCAAAGTCATGGTC
AAGGTAAAGGGCACTTCAGGTGTTCAGGATAAACGCACACCCGCTAGATG
GCCCCCAAACCACCCCCGGGCACCTCCGCCAGAGCATGGGACGGAGTGAC
GCCCGCCCTGTCGGAATGGGTGCTGGATGCCGTTGCTTCTATGGGCTTCA
CCCGCATGACCCCCGTTCAGGCTTCTGCGATTCCCTTGTTCATGGCGCAT
AAAGATGTCGTTGTTGAAGCAGTCACAGGAAGTGGAAAGACCTTGTCTTT
CTTGATTCCAGTTGTCGAGAAGCTTTTGCGCCTGGAAGAACCACTCAAGA
AACACCATGTCGGAGCCATCATCATCTCTCCAACCAG
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Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Molecular Function
TermDefinition
GO:0003676nucleic acid binding
GO:0005524ATP binding
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
SPB4CAN33_52260Aspergillus niger FDAARGOS_311gene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_52260-T1CAN33_52260-T1-proteinAspergillus niger FDAARGOS_311polypeptide


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_52260-T1.cdsCAN33_52260-T1.cdsAspergillus niger FDAARGOS_311CDS


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_52260-T1.exon3CAN33_52260-T1.exon3Aspergillus niger FDAARGOS_311exon
CAN33_52260-T1.exon2CAN33_52260-T1.exon2Aspergillus niger FDAARGOS_311exon
CAN33_52260-T1.exon1CAN33_52260-T1.exon1Aspergillus niger FDAARGOS_311exon


Properties
Property NameValue
DBxrefInterPro:IPR027417
DBxrefInterPro:IPR014014
DBxrefInterPro:IPR000629
DBxrefInterPro:IPR011545
DBxrefInterPro:IPR025313
DBxrefInterPro:IPR001650
DBxrefInterPro:IPR014001
DBxrefPFAM:PF00271
DBxrefPFAM:PF13959
DBxrefPFAM:PF00270
ProductATP-dependent rRNA helicase spb4
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000020.1supercontigNKJJ01000020.1:1377892..1379937 -
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