You are here

Home

CAN33_52595-T1, CAN33_52595-T1 (mRNA) Aspergillus niger FDAARGOS_311

Overview
NameCAN33_52595-T1
Unique NameCAN33_52595-T1
TypemRNA
OrganismAspergillus niger FDAARGOS_311
Sequences
The following sequences are available for this feature:

mRNA from alignment at NKJJ01000020.1:1608336..1610854+

Legend: exonpolypeptideCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>CAN33_52595-T1 ID=CAN33_52595-T1|Name=CAN33_52595-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=2519bp|location=Sequence derived from alignment at NKJJ01000020.1:1608336..1610854+ (Aspergillus niger FDAARGOS_311)
ATGTCCGACTCCACCTCAACCATCCAGACCGTTCCCTACGACGACACCAT
CGCCGCCACAGCCCCGATCGCCGTTCGTTCTGCCTCATACCCTACCCCAG
TGGATTGTACTTCGTGCTCGGAGGAAAGATCGCACAGCGCATCGTCCGGT
AGTGCTTGGGATCAGTCGGGGTCCGCGCCGTCGCAACACAATGCCAGATC
GCGGCGGAACAGGTTCACTGCCTTACCAGAGGCTGGGGCCTCGACCGTGA
GCTTGCGCTCGCTGCGCAATAGCATCCCCAGTATCATTGTCAATGATACC
GCCTCCCGTCCTGCATCCCGCCCAGGATCCCGTCCTGGTTCGCGGTGGTC
GGAGCGCAGATGGGGCGGTCTGAGAAGTAAGAAGTCGGGCGAATTCGATC
GTGATGAAGATACCCCCCCTGTACCGCCGATTCAAGCTCCCTTCAATGGC
ATCGCTCTCGATATCCCGAATTCGGCTCTTGATGGCCTCGGAGCGCAATC
AATGCGTTTCTCCAAGCGCGGAAGTCTTATCAAGGAGGAATCGAAACGCC
AATTACAACAGCAAATCGAACAAGAGGAAGCAAGACGACGAGAGGCGGGC
CAACAGACCCACGATGGAGACAGTGAGCAACAACGGGTACCTGATGACAG
AGAACCGGCGTCACCTGATGTCGCTTCGTCGGAACAAAATAGCACAGAGC
CGGAGACTATTGAGACGCCATCGAGGCGGTCAAAGCCCGTCTCGACCCTC
CGAGTCAGGCACAGCGCCATGGCAAGCAGAGCCATCTCTGCAGACGAAGA
TATGTTGTCGCGACGGGTACGGCTGATGTATGAGAAGGGTGAAGAAAATG
TGACAGACTCAGAAGTAGCGAAGTCCATGGCCATGGAGAATGGCATTTTG
TGGGAAGATACCCCAACCAGTATGGAGACCACTCGTCTTTCTGGACCCAG
TGTGTCAGTGGATACCAAAAGTGTGGTGTCGTCTCTCGGTCCAGAGAATG
GACCAACGATCAAAAGAGAGGCCCACGAGCTAGCTGGAGGCATTGAGTAC
TGGCAGAATATCAAGGCCGGAGACGTCGACCGATACGGATTCATCCGCTC
ACCAACGTCCAACTCCAACGAGGGCATTGACCCCAGTCCCATCCAGCGCG
TCTCTACCAGCCTACTTATGGCTTCTGAGACACCGCGACGGAAACACTCC
ATCCGTCCACCCTCCGCCATTGGAGGAAATCGTTCCTTTTCCGGCCTCAC
AGGCCGCTCCCCAACGCGCAAGATGTCTGAGCCTTCAATACGGCCAACCT
CCTCTCACAGCATGTATAGTACGACGATGATGCGGCGATCAACCTCGCGG
TTCCGTCGGGCCGCCAATCATCTGCCACACAATCGCGACCGCCGCGTCAA
AGATGAGGCAAGCGATATGCTCACCCACCCGACAGCTCCTCTGAATCCGG
GCGAGAAACAGGACGCAGCTGCCGCCCGCGCGGCGAGAAAGAAAGAGTGG
GAGAGAGAAGATAAATGGACAAAAATGGCCCGCCCGATGCGGAGCGGAGA
TGGCGGTGGCATGACATTCGAGTTCGACACGACAAGCTCCAAGCTGATTG
AGCGGACATGGAAAGGCATCCCTGACCGATGGCGAGCTACCGCTTGGTAC
GCCTTTTTGAAAGCCAGCGCCAGATTGCACAGTGATAGCCCTTCAGAAGA
GGAGCTAATCGAAGCGTTCAACGAGTTCCAATTGGTTTCATCGCCCGATG
ATGTCCAGATTGATATCGACGTCCCGAGAACCATCACCAGTCACATCATG
TTCCGGCGACGGTATCGCGGAGGCCAACGACTATTATTCCGAGTACTCCA
CGCAATGTCCTTGTACTTTCCAGACACGGGATACGTCCAGGGCATGGCTG
CTCTTGCTGCGACCCTCCTCGCCTACTACGACGAAGAACACGCATTTATC
ATGCTCGTACGACTGTGGCAATTACGAGGTCTGGAGCGTCTGTACCAGTC
CGGCTTTTCAGGCCTCATGGAGGCCTTGGGGGATTTTGAACGTGAGTGGC
TAGAAAAAGGAGAGGTAGCTGCCAAGCTGGTAAGTCAAACAGCATTCTCC
CATATCTCTCGGTACACCGTTTCCTAACCAGAACTTAGAATGAGCTTGGA
ATTCCTCCCACAGCATACGGCACACGGTGGTATCTGACCCTTTTCAACTA
CTCTATCCCGTTCCCCGCTCAACTCCGCGTCTGGGACGTCTTCATGCTTC
TCGGTGATGCCGAGGACCTCACGGCACCCGGCTCCTCAGGCAAAGGCAGC
AAGAAAGAGGCATCCACCAGTGCCTTTGGAAACGGACTGGATGTTCTTCA
CGCGACCTCCGCCGCCCTGATTGATGGCATGCGCGACATTATCCTCGAAT
CCGACTTTGAAAACGCCATGAAAGTCCTCACCAGCTGGGTTCCCATCAAG
GACATCGAGCTATTCATGCGTGTCGCCAAAGCAGAATGGAAAGTGCACCG
TCGGAAAAAGGCCTCTTAG
back to top

Coding sequence (CDS) from alignment at NKJJ01000020.1:1608336..1610854+

>CAN33_52595-T1 ID=CAN33_52595-T1|Name=CAN33_52595-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=4920bp|location=Sequence derived from alignment at NKJJ01000020.1:1608336..1610854+ (Aspergillus niger FDAARGOS_311)
ATGTCCGACTCCACCTCAACCATCCAGACCGTTCCCTACGACGACACCAT
CGCCGCCACAGCCCCGATCGCCGTTCGTTCTGCCTCATACCCTACCCCAG
TGGATTGTACTTCGTGCTCGGAGGAAAGATCGCACAGCGCATCGTCCGGT
AGTGCTTGGGATCAGTCGGGGTCCGCGCCGTCGCAACACAATGCCAGATC
GCGGCGGAACAGGTTCACTGCCTTACCAGAGGCTGGGGCCTCGACCGTGA
GCTTGCGCTCGCTGCGCAATAGCATCCCCAGTATCATTGTCAATGATACC
GCCTCCCGTCCTGCATCCCGCCCAGGATCCCGTCCTGGTTCGCGGTGGTC
GGAGCGCAGATGGGGCGGTCTGAGAAGTAAGAAGTCGGGCGAATTCGATC
GTGATGAAGATACCCCCCCTGTACCGCCGATTCAAGCTCCCTTCAATGGC
ATCGCTCTCGATATCCCGAATTCGGCTCTTGATGGCCTCGGAGCGCAATC
AATGCGTTTCTCCAAGCGCGGAAGTCTTATCAAGGAGGAATCGAAACGCC
AATTACAACAGCAAATCGAACAAGAGGAAGCAAGACGACGAGAGGCGGGC
CAACAGACCCACGATGGAGACAGTGAGCAACAACGGGTACCTGATGACAG
AGAACCGGCGTCACCTGATGTCGCTTCGTCGGAACAAAATAGCACAGAGC
CGGAGACTATTGAGACGCCATCGAGGCGGTCAAAGCCCGTCTCGACCCTC
CGAGTCAGGCACAGCGCCATGGCAAGCAGAGCCATCTCTGCAGACGAAGA
TATGTTGTCGCGACGGGTACGGCTGATGTATGAGAAGGGTGAAGAAAATG
TGACAGACTCAGAAGTAGCGAAGTCCATGGCCATGGAGAATGGCATTTTG
TGGGAAGATACCCCAACCAGTATGGAGACCACTCGTCTTTCTGGACCCAG
TGTGTCAGTGGATACCAAAAGTGTGGTGTCGTCTCTCGGTCCAGAGAATG
GACCAACGATCAAAAGAGAGGCCCACGAGCTAGCTGGAGGCATTGAGTAC
TGGCAGAATATCAAGGCCGGAGACGTCGACCGATACGGATTCATCCGCTC
ACCAACGTCCAACTCCAACGAGGGCATTGACCCCAGTCCCATCCAGCGCG
TCTCTACCAGCCTACTTATGGCTTCTGAGACACCGCGACGGAAACACTCC
ATCCGTCCACCCTCCGCCATTGGAGGAAATCGTTCCTTTTCCGGCCTCAC
AGGCCGCTCCCCAACGCGCAAGATGTCTGAGCCTTCAATACGGCCAACCT
CCTCTCACAGCATGTATAGTACGACGATGATGCGGCGATCAACCTCGCGG
TTCCGTCGGGCCGCCAATCATCTGCCACACAATCGCGACCGCCGCGTCAA
AGATGAGGCAAGCGATATGCTCACCCACCCGACAGCTCCTCTGAATCCGG
GCGAGAAACAGGACGCAGCTGCCGCCCGCGCGGCGAGAAAGAAAGAGTGG
GAGAGAGAAGATAAATGGACAAAAATGGCCCGCCCGATGCGGAGCGGAGA
TGGCGGTGGCATGACATTCGAGTTCGACACGACAAGCTCCAAGCTGATTG
AGCGGACATGGAAAGGCATCCCTGACCGATGGCGAGCTACCGCTTGGTAC
GCCTTTTTGAAAGCCAGCGCCAGATTGCACAGTGATAGCCCTTCAGAAGA
GGAGCTAATCGAAGCGTTCAACGAGTTCCAATTGGTTTCATCGCCCGATG
ATGTCCAGATTGATATCGACGTCCCGAGAACCATCACCAGTCACATCATG
TTCCGGCGACGGTATCGCGGAGGCCAACGACTATTATTCCGAGTACTCCA
CGCAATGTCCTTGTACTTTCCAGACACGGGATACGTCCAGGGCATGGCTG
CTCTTGCTGCGACCCTCCTCGCCTACTACGACGAAGAACACGCATTTATC
ATGCTCGTACGACTGTGGCAATTACGAGGTCTGGAGCGTCTGTACCAGTC
CGGCTTTTCAGGCCTCATGGAGGCCTTGGGGGATTTTGAACGTGAGTGGC
TAGAAAAAGGAGAGGTAGCTGCCAAGCTGAATGAGCTTGGAATTCCTCCC
ACAGCATACGGCACACGGTGGTATCTGACCCTTTTCAACTACTCTATCCC
GTTCCCCGCTCAACTCCGCGTCTGGGACGTCTTCATGCTTCTCGGTGATG
CCGAGGACCTCACGGCACCCGGCTCCTCAGGCAAAGGCAGCAAGAAAGAG
GCATCCACCAGTGCCTTTGGAAACGGACTGGATGTTCTTCACGCGACCTC
CGCCGCCCTGATTGATGGCATGCGCGACATTATCCTCGAATCCGACTTTG
AAAACGCCATGAAAGTCCTCACCAGCTGGGTTCCCATCAAGGACATCGAG
CTATTCATGCGTGTCGCCAAAGCAGAATGGAAAGTGCACCGTCGGAAAAA
GGCCTCTTAGATGTCCGACTCCACCTCAACCATCCAGACCGTTCCCTACG
ACGACACCATCGCCGCCACAGCCCCGATCGCCGTTCGTTCTGCCTCATAC
CCTACCCCAGTGGATTGTACTTCGTGCTCGGAGGAAAGATCGCACAGCGC
ATCGTCCGGTAGTGCTTGGGATCAGTCGGGGTCCGCGCCGTCGCAACACA
ATGCCAGATCGCGGCGGAACAGGTTCACTGCCTTACCAGAGGCTGGGGCC
TCGACCGTGAGCTTGCGCTCGCTGCGCAATAGCATCCCCAGTATCATTGT
CAATGATACCGCCTCCCGTCCTGCATCCCGCCCAGGATCCCGTCCTGGTT
CGCGGTGGTCGGAGCGCAGATGGGGCGGTCTGAGAAGTAAGAAGTCGGGC
GAATTCGATCGTGATGAAGATACCCCCCCTGTACCGCCGATTCAAGCTCC
CTTCAATGGCATCGCTCTCGATATCCCGAATTCGGCTCTTGATGGCCTCG
GAGCGCAATCAATGCGTTTCTCCAAGCGCGGAAGTCTTATCAAGGAGGAA
TCGAAACGCCAATTACAACAGCAAATCGAACAAGAGGAAGCAAGACGACG
AGAGGCGGGCCAACAGACCCACGATGGAGACAGTGAGCAACAACGGGTAC
CTGATGACAGAGAACCGGCGTCACCTGATGTCGCTTCGTCGGAACAAAAT
AGCACAGAGCCGGAGACTATTGAGACGCCATCGAGGCGGTCAAAGCCCGT
CTCGACCCTCCGAGTCAGGCACAGCGCCATGGCAAGCAGAGCCATCTCTG
CAGACGAAGATATGTTGTCGCGACGGGTACGGCTGATGTATGAGAAGGGT
GAAGAAAATGTGACAGACTCAGAAGTAGCGAAGTCCATGGCCATGGAGAA
TGGCATTTTGTGGGAAGATACCCCAACCAGTATGGAGACCACTCGTCTTT
CTGGACCCAGTGTGTCAGTGGATACCAAAAGTGTGGTGTCGTCTCTCGGT
CCAGAGAATGGACCAACGATCAAAAGAGAGGCCCACGAGCTAGCTGGAGG
CATTGAGTACTGGCAGAATATCAAGGCCGGAGACGTCGACCGATACGGAT
TCATCCGCTCACCAACGTCCAACTCCAACGAGGGCATTGACCCCAGTCCC
ATCCAGCGCGTCTCTACCAGCCTACTTATGGCTTCTGAGACACCGCGACG
GAAACACTCCATCCGTCCACCCTCCGCCATTGGAGGAAATCGTTCCTTTT
CCGGCCTCACAGGCCGCTCCCCAACGCGCAAGATGTCTGAGCCTTCAATA
CGGCCAACCTCCTCTCACAGCATGTATAGTACGACGATGATGCGGCGATC
AACCTCGCGGTTCCGTCGGGCCGCCAATCATCTGCCACACAATCGCGACC
GCCGCGTCAAAGATGAGGCAAGCGATATGCTCACCCACCCGACAGCTCCT
CTGAATCCGGGCGAGAAACAGGACGCAGCTGCCGCCCGCGCGGCGAGAAA
GAAAGAGTGGGAGAGAGAAGATAAATGGACAAAAATGGCCCGCCCGATGC
GGAGCGGAGATGGCGGTGGCATGACATTCGAGTTCGACACGACAAGCTCC
AAGCTGATTGAGCGGACATGGAAAGGCATCCCTGACCGATGGCGAGCTAC
CGCTTGGTACGCCTTTTTGAAAGCCAGCGCCAGATTGCACAGTGATAGCC
CTTCAGAAGAGGAGCTAATCGAAGCGTTCAACGAGTTCCAATTGGTTTCA
TCGCCCGATGATGTCCAGATTGATATCGACGTCCCGAGAACCATCACCAG
TCACATCATGTTCCGGCGACGGTATCGCGGAGGCCAACGACTATTATTCC
GAGTACTCCACGCAATGTCCTTGTACTTTCCAGACACGGGATACGTCCAG
GGCATGGCTGCTCTTGCTGCGACCCTCCTCGCCTACTACGACGAAGAACA
CGCATTTATCATGCTCGTACGACTGTGGCAATTACGAGGTCTGGAGCGTC
TGTACCAGTCCGGCTTTTCAGGCCTCATGGAGGCCTTGGGGGATTTTGAA
CGTGAGTGGCTAGAAAAAGGAGAGGTAGCTGCCAAGCTGAATGAGCTTGG
AATTCCTCCCACAGCATACGGCACACGGTGGTATCTGACCCTTTTCAACT
ACTCTATCCCGTTCCCCGCTCAACTCCGCGTCTGGGACGTCTTCATGCTT
CTCGGTGATGCCGAGGACCTCACGGCACCCGGCTCCTCAGGCAAAGGCAG
CAAGAAAGAGGCATCCACCAGTGCCTTTGGAAACGGACTGGATGTTCTTC
ACGCGACCTCCGCCGCCCTGATTGATGGCATGCGCGACATTATCCTCGAA
TCCGACTTTGAAAACGCCATGAAAGTCCTCACCAGCTGGGTTCCCATCAA
GGACATCGAGCTATTCATGCGTGTCGCCAAAGCAGAATGGAAAGTGCACC
GTCGGAAAAAGGCCTCTTAG
back to top
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
CAN33_52595CAN33_52595Aspergillus niger FDAARGOS_311gene


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_52595-T1.exon1CAN33_52595-T1.exon1Aspergillus niger FDAARGOS_311exon
CAN33_52595-T1.exon2CAN33_52595-T1.exon2Aspergillus niger FDAARGOS_311exon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CAN33_52595-T1.cdsCAN33_52595-T1.cdsAspergillus niger FDAARGOS_311CDS


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
CAN33_52595-T1CAN33_52595-T1-proteinAspergillus niger FDAARGOS_311polypeptide


Properties
Property NameValue
DBxrefInterPro:IPR035969
DBxrefInterPro:IPR000195
DBxrefPFAM:PF00566
ProductRab-GTPase-TBC domain family protein
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Aspergillus niger FDAARGOS_311 whole genome analysis2021-11-01
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
NKJJ01000020.1supercontigNKJJ01000020.1:1608336..1610854 +
Powered by Drupal