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Sequences
The following sequences are available for this feature:
mRNA from alignment at NKJJ01000020.1:2058256..2059476+ Legend: polypeptideexonCDS Hold the cursor over a type above to highlight its positions in the sequence below. >CAN33_53290-T1 ID=CAN33_53290-T1|Name=CAN33_53290-T1|organism=Aspergillus niger FDAARGOS_311|type=mRNA|length=1221bp|location=Sequence derived from alignment at NKJJ01000020.1:2058256..2059476+ (Aspergillus niger FDAARGOS_311)
ATGCCTGATAGGAAATCCGTTCAGCCTGCTAAGAAGAGAAAGGTCCGCCC
ATCTGATGTCCGTGGCATGTTGACCACAGACGTCTCACCATTGGCTTTTC
CGCATCTGGTAATCAATGTCTAACGCGTGGCGGCACAGGGAGGTGGCCAA
TGGCAGAAACACCAACAAGGCAATAAGTCGGGCATTGAGGGAGGCGACTG
GGGAGTCTTCGTGTCGTGCGATCTGGGAAAGGAAGGGAAATGTATGGCAG
AGGTAGTGGATGTTTTCTCGCAGGTTAGTAGCATGAATGACAGGGCTTTG
TGAATAGAAGGCGACCCACGGTATCTGGCAGATTGATGCGATCTGATATG
CTCATCCATCTGACTTGTGTTATTTCCCAGAGTGTGGAATCATCCAGCAG
TGACAGTCATGGAGGCAAGCTCGACTCGGATGAGGAGGATGACGATGATG
ACATCGAGGCCCAAATCAGAAGAGAGGTCGAAGGCCTGAAGCCCAGCGCG
AGCAAGTCCCGCCCGTTTCATGCCATCAGAATGGATTTGCCATGTCGTGC
GTTAACCCTCGTTCTCCTCCTTAGATTGATCTAGGTTTTGAGAGACGCTA
ATATACTTCAGTGTTGTTTGTGCGATTTGACAAATCCATCAATCCAGAGG
AAATGGTACATCAGCTTTGCTTAGACGCAGCTGCTAATCCTGAAAAGAAA
CGATCCCGATGGATCCAACGCATGACACCTGCAATTTCCGTTCGCAAAAC
TCTCAGTGTCGACCTGGAGTCTTTTGCACGGGAAATACTCAAACCGCATT
TCCATTCCGGGGGACCTCCCAAAAAGGTGAGTCTCGGTCTCACCGTAAGG
CTTAGATGGTCATGAACTCCCATTAACCAGAAAATTTCAGTACGCAATTC
GACCTGTGGTGAGAAGCAACAAGAAGTTCAACCGCGACATTGTCATCAAG
ACCGTTGCAGATGTCGTGGGGCCCGAACATCCCGTTGATCTCAAGAACTA
TGACTTGATCATTCTCGTCACCGTTATCCAGGTCAGTTTTCTACGGACGT
AGTGTGGTGTTTAAGTCGCTCATACAAGTACCGTAACTGACAATAAATTA
TCAGAATGTCATTGGCATGAGTGTTGCCGGAAGTGACTATGATCGGTTAA
AGAAGTATAACCTGGCCGAGTTATACAGTCCAGCACCTACGTCAGAGGCC
GCCGAATCTACTAAGGACTAA back to topCoding sequence (CDS) from alignment at NKJJ01000020.1:2058256..2059476+ >CAN33_53290-T1 ID=CAN33_53290-T1|Name=CAN33_53290-T1|organism=Aspergillus niger FDAARGOS_311|type=CDS|length=4986bp|location=Sequence derived from alignment at NKJJ01000020.1:2058256..2059476+ (Aspergillus niger FDAARGOS_311)
ATGCCTGATAGGAAATCCGTTCAGCCTGCTAAGAAGAGAAAGGTCCGCCC
ATCTGATGGAGGTGGCCAATGGCAGAAACACCAACAAGGCAATAAGTCGG
GCATTGAGGGAGGCGACTGGGGAGTCTTCGTGTCGTGCGATCTGGGAAAG
GAAGGGAAATGTATGGCAGAGGTAGTGGATGTTTTCTCGCAGAGTGTGGA
ATCATCCAGCAGTGACAGTCATGGAGGCAAGCTCGACTCGGATGAGGAGG
ATGACGATGATGACATCGAGGCCCAAATCAGAAGAGAGGTCGAAGGCCTG
AAGCCCAGCGCGAGCAAGTCCCGCCCGTTTCATGCCATCAGAATGGATTT
GCCATGTCTGTTGTTTGTGCGATTTGACAAATCCATCAATCCAGAGGAAA
TGGTACATCAGCTTTGCTTAGACGCAGCTGCTAATCCTGAAAAGAAACGA
TCCCGATGGATCCAACGCATGACACCTGCAATTTCCGTTCGCAAAACTCT
CAGTGTCGACCTGGAGTCTTTTGCACGGGAAATACTCAAACCGCATTTCC
ATTCCGGGGGACCTCCCAAAAAGTACGCAATTCGACCTGTGGTGAGAAGC
AACAAGAAGTTCAACCGCGACATTGTCATCAAGACCGTTGCAGATGTCGT
GGGGCCCGAACATCCCGTTGATCTCAAGAACTATGACTTGATCATTCTCG
TCACCGTTATCCAGAATGTCATTGGCATGAGTGTTGCCGGAAGTGACTAT
GATCGGTTAAAGAAGTATAACCTGGCCGAGTTATACAGTCCAGCACCTAC
GTCAGAGGCCGCCGAATCTACTAAGGACTAAATGCCTGATAGGAAATCCG
TTCAGCCTGCTAAGAAGAGAAAGGTCCGCCCATCTGATGGAGGTGGCCAA
TGGCAGAAACACCAACAAGGCAATAAGTCGGGCATTGAGGGAGGCGACTG
GGGAGTCTTCGTGTCGTGCGATCTGGGAAAGGAAGGGAAATGTATGGCAG
AGGTAGTGGATGTTTTCTCGCAGAGTGTGGAATCATCCAGCAGTGACAGT
CATGGAGGCAAGCTCGACTCGGATGAGGAGGATGACGATGATGACATCGA
GGCCCAAATCAGAAGAGAGGTCGAAGGCCTGAAGCCCAGCGCGAGCAAGT
CCCGCCCGTTTCATGCCATCAGAATGGATTTGCCATGTCTGTTGTTTGTG
CGATTTGACAAATCCATCAATCCAGAGGAAATGGTACATCAGCTTTGCTT
AGACGCAGCTGCTAATCCTGAAAAGAAACGATCCCGATGGATCCAACGCA
TGACACCTGCAATTTCCGTTCGCAAAACTCTCAGTGTCGACCTGGAGTCT
TTTGCACGGGAAATACTCAAACCGCATTTCCATTCCGGGGGACCTCCCAA
AAAGTACGCAATTCGACCTGTGGTGAGAAGCAACAAGAAGTTCAACCGCG
ACATTGTCATCAAGACCGTTGCAGATGTCGTGGGGCCCGAACATCCCGTT
GATCTCAAGAACTATGACTTGATCATTCTCGTCACCGTTATCCAGAATGT
CATTGGCATGAGTGTTGCCGGAAGTGACTATGATCGGTTAAAGAAGTATA
ACCTGGCCGAGTTATACAGTCCAGCACCTACGTCAGAGGCCGCCGAATCT
ACTAAGGACTAAATGCCTGATAGGAAATCCGTTCAGCCTGCTAAGAAGAG
AAAGGTCCGCCCATCTGATGGAGGTGGCCAATGGCAGAAACACCAACAAG
GCAATAAGTCGGGCATTGAGGGAGGCGACTGGGGAGTCTTCGTGTCGTGC
GATCTGGGAAAGGAAGGGAAATGTATGGCAGAGGTAGTGGATGTTTTCTC
GCAGAGTGTGGAATCATCCAGCAGTGACAGTCATGGAGGCAAGCTCGACT
CGGATGAGGAGGATGACGATGATGACATCGAGGCCCAAATCAGAAGAGAG
GTCGAAGGCCTGAAGCCCAGCGCGAGCAAGTCCCGCCCGTTTCATGCCAT
CAGAATGGATTTGCCATGTCTGTTGTTTGTGCGATTTGACAAATCCATCA
ATCCAGAGGAAATGGTACATCAGCTTTGCTTAGACGCAGCTGCTAATCCT
GAAAAGAAACGATCCCGATGGATCCAACGCATGACACCTGCAATTTCCGT
TCGCAAAACTCTCAGTGTCGACCTGGAGTCTTTTGCACGGGAAATACTCA
AACCGCATTTCCATTCCGGGGGACCTCCCAAAAAGTACGCAATTCGACCT
GTGGTGAGAAGCAACAAGAAGTTCAACCGCGACATTGTCATCAAGACCGT
TGCAGATGTCGTGGGGCCCGAACATCCCGTTGATCTCAAGAACTATGACT
TGATCATTCTCGTCACCGTTATCCAGAATGTCATTGGCATGAGTGTTGCC
GGAAGTGACTATGATCGGTTAAAGAAGTATAACCTGGCCGAGTTATACAG
TCCAGCACCTACGTCAGAGGCCGCCGAATCTACTAAGGACTAAATGCCTG
ATAGGAAATCCGTTCAGCCTGCTAAGAAGAGAAAGGTCCGCCCATCTGAT
GGAGGTGGCCAATGGCAGAAACACCAACAAGGCAATAAGTCGGGCATTGA
GGGAGGCGACTGGGGAGTCTTCGTGTCGTGCGATCTGGGAAAGGAAGGGA
AATGTATGGCAGAGGTAGTGGATGTTTTCTCGCAGAGTGTGGAATCATCC
AGCAGTGACAGTCATGGAGGCAAGCTCGACTCGGATGAGGAGGATGACGA
TGATGACATCGAGGCCCAAATCAGAAGAGAGGTCGAAGGCCTGAAGCCCA
GCGCGAGCAAGTCCCGCCCGTTTCATGCCATCAGAATGGATTTGCCATGT
CTGTTGTTTGTGCGATTTGACAAATCCATCAATCCAGAGGAAATGGTACA
TCAGCTTTGCTTAGACGCAGCTGCTAATCCTGAAAAGAAACGATCCCGAT
GGATCCAACGCATGACACCTGCAATTTCCGTTCGCAAAACTCTCAGTGTC
GACCTGGAGTCTTTTGCACGGGAAATACTCAAACCGCATTTCCATTCCGG
GGGACCTCCCAAAAAGTACGCAATTCGACCTGTGGTGAGAAGCAACAAGA
AGTTCAACCGCGACATTGTCATCAAGACCGTTGCAGATGTCGTGGGGCCC
GAACATCCCGTTGATCTCAAGAACTATGACTTGATCATTCTCGTCACCGT
TATCCAGAATGTCATTGGCATGAGTGTTGCCGGAAGTGACTATGATCGGT
TAAAGAAGTATAACCTGGCCGAGTTATACAGTCCAGCACCTACGTCAGAG
GCCGCCGAATCTACTAAGGACTAAATGCCTGATAGGAAATCCGTTCAGCC
TGCTAAGAAGAGAAAGGTCCGCCCATCTGATGGAGGTGGCCAATGGCAGA
AACACCAACAAGGCAATAAGTCGGGCATTGAGGGAGGCGACTGGGGAGTC
TTCGTGTCGTGCGATCTGGGAAAGGAAGGGAAATGTATGGCAGAGGTAGT
GGATGTTTTCTCGCAGAGTGTGGAATCATCCAGCAGTGACAGTCATGGAG
GCAAGCTCGACTCGGATGAGGAGGATGACGATGATGACATCGAGGCCCAA
ATCAGAAGAGAGGTCGAAGGCCTGAAGCCCAGCGCGAGCAAGTCCCGCCC
GTTTCATGCCATCAGAATGGATTTGCCATGTCTGTTGTTTGTGCGATTTG
ACAAATCCATCAATCCAGAGGAAATGGTACATCAGCTTTGCTTAGACGCA
GCTGCTAATCCTGAAAAGAAACGATCCCGATGGATCCAACGCATGACACC
TGCAATTTCCGTTCGCAAAACTCTCAGTGTCGACCTGGAGTCTTTTGCAC
GGGAAATACTCAAACCGCATTTCCATTCCGGGGGACCTCCCAAAAAGTAC
GCAATTCGACCTGTGGTGAGAAGCAACAAGAAGTTCAACCGCGACATTGT
CATCAAGACCGTTGCAGATGTCGTGGGGCCCGAACATCCCGTTGATCTCA
AGAACTATGACTTGATCATTCTCGTCACCGTTATCCAGAATGTCATTGGC
ATGAGTGTTGCCGGAAGTGACTATGATCGGTTAAAGAAGTATAACCTGGC
CGAGTTATACAGTCCAGCACCTACGTCAGAGGCCGCCGAATCTACTAAGG
ACTAAATGCCTGATAGGAAATCCGTTCAGCCTGCTAAGAAGAGAAAGGTC
CGCCCATCTGATGGAGGTGGCCAATGGCAGAAACACCAACAAGGCAATAA
GTCGGGCATTGAGGGAGGCGACTGGGGAGTCTTCGTGTCGTGCGATCTGG
GAAAGGAAGGGAAATGTATGGCAGAGGTAGTGGATGTTTTCTCGCAGAGT
GTGGAATCATCCAGCAGTGACAGTCATGGAGGCAAGCTCGACTCGGATGA
GGAGGATGACGATGATGACATCGAGGCCCAAATCAGAAGAGAGGTCGAAG
GCCTGAAGCCCAGCGCGAGCAAGTCCCGCCCGTTTCATGCCATCAGAATG
GATTTGCCATGTCTGTTGTTTGTGCGATTTGACAAATCCATCAATCCAGA
GGAAATGGTACATCAGCTTTGCTTAGACGCAGCTGCTAATCCTGAAAAGA
AACGATCCCGATGGATCCAACGCATGACACCTGCAATTTCCGTTCGCAAA
ACTCTCAGTGTCGACCTGGAGTCTTTTGCACGGGAAATACTCAAACCGCA
TTTCCATTCCGGGGGACCTCCCAAAAAGTACGCAATTCGACCTGTGGTGA
GAAGCAACAAGAAGTTCAACCGCGACATTGTCATCAAGACCGTTGCAGAT
GTCGTGGGGCCCGAACATCCCGTTGATCTCAAGAACTATGACTTGATCAT
TCTCGTCACCGTTATCCAGAATGTCATTGGCATGAGTGTTGCCGGAAGTG
ACTATGATCGGTTAAAGAAGTATAACCTGGCCGAGTTATACAGTCCAGCA
CCTACGTCAGAGGCCGCCGAATCTACTAAGGACTAA back to top
Annotated Terms
The following terms have been associated with this mRNA:
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006400 | tRNA modification |
Vocabulary: Molecular Function
| Term | Definition |
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| GO:0003723 | RNA binding |
Relationships
This mRNA is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this mRNA:
The following exon feature(s) are a part of this mRNA:
The following CDS feature(s) are a part of this mRNA:
Properties
| Property Name | Value |
|---|
| Note | BUSCO:EOG09264829 |
| DBxref | InterPro:IPR040183 |
| DBxref | InterPro:IPR004114 |
| DBxref | PFAM:PF02926 |
| Product | THUMP domain family protein |
Analyses
This mRNA is derived from or has results from the following analyses
Alignments
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| NKJJ01000020.1 | supercontig | NKJJ01000020.1:2058256..2059476 + |
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